Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014857

Physical Location & Seq

Genomic Coordinates Forward (+)

18956153 .. 18961223

Gene Structure 5071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18023

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGATCATTTTCTCTTGGGCAAAATGCTTGGAGACTGGTGAGACTATGGCTATAAAGAAGGTTTTGCAAGACAGAAGAGAAAAGAACAAGGAACGTCAATTGATGCGTGTGATTGATATGTTAACACACCCACTTCAGAACTCTCTAATGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009593 GO:0009653 GO:0009719 GO:0009720 GO:0009725 GO:0009726 GO:0009729 GO:0009733 GO:0009741 GO:0009742 GO:0009755 GO:0009825 GO:0009888 GO:0009965 GO:0009966 GO:0009968 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010053 GO:0010054 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0021700 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0032880 GO:0033157 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0046822 GO:0046824 GO:0046825 GO:0046827 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048518 GO:0048519 GO:0048523 GO:0048545 GO:0048583 GO:0048585 GO:0048731 GO:0048764 GO:0048765 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0051606 GO:0051716 GO:0060341 GO:0065007 GO:0070201 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071695 GO:0071704 GO:0071944 GO:0090087 GO:0090316 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1900457 GO:1900458 GO:1901564 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904951 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04075 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04075 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

51

Amino Acids

6.09

Weight (kDa)

9.51

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014857)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0255591 RchiOBHm_Chr7g0201351
rosa_laevigata	RLG00000034031
rosa_multiflora	Rmu_sc0007618.1_g000021 Rmu_sc0011008.1_g000002
rosa_roxburghii	Rroxscaffold_1G00039500 Rroxscaffold_4G00299840 Rroxscaffold_6G00398260
rosa_samantha	Rh2CG513300 Rh5CG201100 Rh5CG313100 Rh6BG226600 Rh6CG229200 Rh6DG220300 Rh7BG289100 Rh7BG444400
rosa_wichuraiana	Rw4G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	119
Alw26I	GTCTC	2 cut(s)	26, 35
AsuHPI	GGTGA	1 cut(s)	50
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	26, 35
BmsI	GCATC	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	40
BsmAI	GTCTC	2 cut(s)	26, 35
Bsp143I	GATC	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	40
BssMI	GATC	1 cut(s)	3
Bst6I	CTCTTC	1 cut(s)	70
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	2 cut(s)	26, 35
BstMBI	GATC	1 cut(s)	3
CviJI	RGCY	1 cut(s)	50
CviKI_1	RGCY	1 cut(s)	50
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	119
FaiI	YATR	4 cut(s)	47, 53, 119, 154
FbaI	TGATCA	1 cut(s)	3
FspEI	CC	8 cut(s)	2, 14, 21, 32, 44, 74, 143, 144
HincII	GTYRAC	1 cut(s)	123
HindII	GTYRAC	1 cut(s)	123
HpaI	GTTAAC	1 cut(s)	123
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	1 cut(s)	138
Hpy8I	GTNNAC	1 cut(s)	123
HpyAV	CCTTC	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	1 cut(s)	67
HpySE526I	ACGT	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	3
KspAI	GTTAAC	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	1 cut(s)	21
LweI	GCATC	1 cut(s)	93
MaeII	ACGT	1 cut(s)	94
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	87
MfeI	CAATTG	1 cut(s)	98
MluCI	AATT	1 cut(s)	98
MseI	TTAA	1 cut(s)	122
MunI	CAATTG	1 cut(s)	98
NdeII	GATC	1 cut(s)	3
SaqAI	TTAA	1 cut(s)	122
Sau3AI	GATC	1 cut(s)	3
SetI	ASST	2 cut(s)	63, 97
SfaNI	GCATC	1 cut(s)	93
SgeI	CNNG	6 cut(s)	27, 40, 48, 80, 100, 119
Sse9I	AATT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	97
TasI	AATT	1 cut(s)	98
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.