Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011008.1

Orthogroup ID

OG0014857

Physical Location & Seq

Genomic Coordinates Forward (+)

7801 .. 9863

Gene Structure 2063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011008.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atgaggcatgttccatatgctccatggtcgggcattcagcggagacatgtccaaacgtgcaatatcaaagtgactttcatcaaagtagcatgtttggaggatatcaagcaaaccaagggcattggaatgatcattatgcccctgcatacaatccggcatgggaatatcctccacactctgtgtggaatggctactcaaatatccaacaaggatcctttaatgatgttgaagcttcttcattatcataccatgattatcattcgccaacacctcaagctagagctcttcttcatgcttgtttgggcaatatgggtggaacgcaacaatgttacttggaaggggacctctttttgtcccatgaatactgctacctgggctaccaagctccttgaggactaccatgcggcccatccggggtcaccaaagaagcaatcaaggcataaaactaagtggcagctgccacctcgaggtaggttgaaacttaatattgatggcgcattttacagcgctactggtcaagggggtattggggctttcatcaggaatgaagatgtgattgctgcactcaaaagtgacacagaggactactctgaagttggttgtattgttgaggattgcaaagcatatctgcatgcaatttcttctattaatctatactctgtctatcgtgaagcaaacgatgagactcctatgattatccgggatgctctctttgaggattcttgtgctagtactcgaggtgtagagcttcaatttcttgatcacacgacgagtgatggtgcacaagtcggtggctgtggtgatggtgacatgacctactacggtggccggaccctgacggtgaaggaggacggagggaccgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

288

Amino Acids

32.36

Weight (kDa)

7.65

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014857)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0255591 RchiOBHm_Chr7g0201351
rosa_laevigata	RLG00000034031
rosa_multiflora	Rmu_sc0007618.1_g000021 Rmu_sc0011008.1_g000002
rosa_roxburghii	Rroxscaffold_1G00039500 Rroxscaffold_4G00299840 Rroxscaffold_6G00398260
rosa_samantha	Rh2CG513300 Rh5CG201100 Rh5CG313100 Rh6BG226600 Rh6CG229200 Rh6DG220300 Rh7BG289100 Rh7BG444400
rosa_wichuraiana	Rw4G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	465
AciI	CCGC	2 cut(s)	40, 404
AclWI	GGATC	2 cut(s)	206, 219
AcoI	YGGCCR	1 cut(s)	826
AcuI	CTGAAG	1 cut(s)	612
AdeI	CACNNNGTG	1 cut(s)	180
AfaI	GTAC	1 cut(s)	733
AfeI	AGCGCT	1 cut(s)	508
AfiI	CCNNNNNNNGG	3 cut(s)	29, 414, 467
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	3 cut(s)	229, 478, 752
AjnI	CCWGG	1 cut(s)	371
AluBI	AGCT	6 cut(s)	232, 277, 283, 385, 457, 748
AluI	AGCT	6 cut(s)	232, 277, 283, 385, 457, 748
Alw21I	GWGCWC	2 cut(s)	285, 784
Alw26I	GTCTC	2 cut(s)	37, 677
Alw44I	GTGCAC	1 cut(s)	780
AlwI	GGATC	2 cut(s)	206, 219
Ama87I	CYCGRG	2 cut(s)	465, 735
Aor51HI	AGCGCT	1 cut(s)	508
AoxI	GGCC	2 cut(s)	405, 826
ApaLI	GTGCAC	1 cut(s)	780
ApeKI	GCWGC	3 cut(s)	454, 457, 560
AseI	ATTAAT	1 cut(s)	648
AspLEI	GCGC	2 cut(s)	497, 509
AspS9I	GGNCC	4 cut(s)	342, 406, 831, 858
AsuC2I	CCSGG	2 cut(s)	414, 701
AsuHPI	GGTGA	4 cut(s)	411, 812, 818, 853
AvaI	CYCGRG	2 cut(s)	465, 735
AvaII	GGWCC	3 cut(s)	342, 831, 858
BaeGI	GKGCMC	1 cut(s)	784
BamHI	GGATCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	285
Bbv12I	GWGCWC	2 cut(s)	285, 784
BbvI	GCAGC	3 cut(s)	444, 466, 547
BccI	CCATC	4 cut(s)	417, 485, 770, 797
BciT130I	CCWGG	1 cut(s)	373
BclI	TGATCA	2 cut(s)	129, 760
BcnI	CCSGG	2 cut(s)	414, 701
BcoDI	GTCTC	2 cut(s)	37, 677
BfaI	CTAG	3 cut(s)	278, 729, 865
BfoI	RGCGCY	1 cut(s)	510
BisI	GCNGC	4 cut(s)	405, 455, 458, 561
BlsI	GCNGC	4 cut(s)	406, 456, 459, 562
BmcAI	AGTACT	1 cut(s)	733
Bme1390I	CCNGG	3 cut(s)	373, 414, 701
Bme18I	GGWCC	3 cut(s)	342, 831, 858
BmeT110I	CYCGRG	2 cut(s)	465, 735
BmgT120I	GGNCC	4 cut(s)	342, 406, 831, 858
BmiI	GGNNCC	4 cut(s)	213, 343, 833, 859
BmrFI	CCNGG	3 cut(s)	373, 414, 701
BmsI	GCATC	1 cut(s)	694
BplI	GAGNNNNNCTC	2 cut(s)	572, 604
BpuEI	CTTGAG	2 cut(s)	257, 410
BpuMI	CCSGG	2 cut(s)	414, 701
BsaJI	CCNNGG	4 cut(s)	23, 114, 372, 413
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 414, 467
Bse1I	ACTGG	1 cut(s)	517
BseBI	CCWGG	1 cut(s)	373
BseDI	CCNNGG	4 cut(s)	23, 114, 372, 413
BseGI	GGATG	2 cut(s)	409, 709
BseLI	CCNNNNNNNGG	3 cut(s)	29, 414, 467
BseNI	ACTGG	1 cut(s)	517
BseSI	GKGCMC	1 cut(s)	784
BseXI	GCAGC	3 cut(s)	444, 466, 547
BsgI	GTGCAG	1 cut(s)	546
BshFI	GGCC	2 cut(s)	407, 828
BsiHKAI	GWGCWC	2 cut(s)	285, 784
BsiHKCI	CYCGRG	2 cut(s)	465, 735
BsiSI	CCGG	4 cut(s)	154, 413, 700, 829
BslFI	GGGAC	2 cut(s)	339, 355
BslI	CCNNNNNNNGG	3 cut(s)	29, 414, 467
BsmAI	GTCTC	2 cut(s)	37, 677
BsmFI	GGGAC	2 cut(s)	339, 355
BsmI	GAATGC	1 cut(s)	33
BsnI	GGCC	2 cut(s)	407, 828
BsoBI	CYCGRG	2 cut(s)	465, 735
Bsp1286I	GDGCHC	2 cut(s)	285, 784
Bsp143I	GATC	3 cut(s)	129, 211, 760
Bsp19I	CCATGG	1 cut(s)	23
BspACI	CCGC	2 cut(s)	40, 404
BspANI	GGCC	2 cut(s)	407, 828
BspLI	GGNNCC	4 cut(s)	213, 343, 833, 859
BspPI	GGATC	2 cut(s)	206, 219
BspQI	GCTCTTC	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	517
BssECI	CCNNGG	4 cut(s)	23, 114, 372, 413
BssMI	GATC	3 cut(s)	129, 211, 760
BssT1I	CCWWGG	2 cut(s)	23, 114
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	2 cut(s)	824, 841
Bst6I	CTCTTC	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	633
BstDEI	CTNAG	1 cut(s)	447
BstDSI	CCRYGG	1 cut(s)	23
BstEII	GGTNACC	1 cut(s)	417
BstF5I	GGATG	2 cut(s)	409, 709
BstH2I	RGCGCY	1 cut(s)	510
BstHHI	GCGC	2 cut(s)	497, 509
BstKTI	GATC	3 cut(s)	132, 214, 763
BstMAI	GTCTC	2 cut(s)	37, 677
BstMBI	GATC	3 cut(s)	129, 211, 760
BstMWI	GCNNNNNNNGC	2 cut(s)	374, 436
BstNI	CCWGG	1 cut(s)	373
BstNSI	RCATGY	4 cut(s)	11, 50, 93, 635
BstPI	GGTNACC	1 cut(s)	417
BstSCI	CCNGG	3 cut(s)	371, 412, 699
BstSLI	GKGCMC	1 cut(s)	784
BstV1I	GCAGC	3 cut(s)	444, 466, 547
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	407, 828
BtgI	CCRYGG	1 cut(s)	23
BtsCI	GGATG	2 cut(s)	409, 709
Cac8I	GCNNGC	1 cut(s)	633
CfoI	GCGC	2 cut(s)	497, 509
Cfr13I	GGNCC	4 cut(s)	342, 406, 831, 858
Csp6I	GTAC	1 cut(s)	732
CspCI	CAANNNNNGTGG	2 cut(s)	294, 329
CviQI	GTAC	1 cut(s)	732
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	3 cut(s)	131, 213, 762
DpnII	GATC	3 cut(s)	129, 211, 760
DraIII	CACNNNGTG	1 cut(s)	180
EaeI	YGGCCR	1 cut(s)	826
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Ecl136II	GAGCTC	1 cut(s)	283
Eco130I	CCWWGG	2 cut(s)	23, 114
Eco24I	GRGCYC	1 cut(s)	285
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	3 cut(s)	342, 831, 858
Eco47III	AGCGCT	1 cut(s)	508
Eco53kI	GAGCTC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	612
Eco88I	CYCGRG	2 cut(s)	465, 735
Eco91I	GGTNACC	1 cut(s)	417
EcoICRI	GAGCTC	1 cut(s)	283
EcoO109I	RGGNCCY	1 cut(s)	342
EcoO65I	GGTNACC	1 cut(s)	417
EcoRII	CCWGG	1 cut(s)	371
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	2 cut(s)	23, 114
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	2 cut(s)	23, 114
FaqI	GGGAC	2 cut(s)	339, 355
FauNDI	CATATG	1 cut(s)	16
FbaI	TGATCA	2 cut(s)	129, 760
Fnu4HI	GCNGC	4 cut(s)	405, 455, 458, 561
FokI	GGATG	2 cut(s)	396, 716
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	4 cut(s)	405, 455, 458, 561
FspBI	CTAG	3 cut(s)	278, 729, 865
GlaI	GCGC	2 cut(s)	496, 508
GluI	GCNGC	4 cut(s)	405, 455, 458, 561
HaeII	RGCGCY	1 cut(s)	510
HaeIII	GGCC	2 cut(s)	407, 828
HapII	CCGG	4 cut(s)	154, 413, 700, 829
HhaI	GCGC	2 cut(s)	497, 509
Hin6I	GCGC	2 cut(s)	495, 507
HinP1I	GCGC	2 cut(s)	495, 507
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	2 cut(s)	685, 719
HpaII	CCGG	4 cut(s)	154, 413, 700, 829
HphI	GGTGA	4 cut(s)	411, 812, 818, 853
Hpy166II	GTNNAC	1 cut(s)	782
Hpy188I	TCNGA	1 cut(s)	592
Hpy188III	TCNNGA	3 cut(s)	541, 668, 758
Hpy8I	GTNNAC	1 cut(s)	782
Hpy99I	CGWCG	1 cut(s)	772
HpyAV	CCTTC	2 cut(s)	331, 838
HpyCH4III	ACNGT	2 cut(s)	824, 841
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	7 cut(s)	60, 145, 563, 618, 631, 635, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	374, 436
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	1 cut(s)	56
HspAI	GCGC	2 cut(s)	495, 507
Ksp22I	TGATCA	2 cut(s)	129, 760
Kzo9I	GATC	3 cut(s)	129, 211, 760
LguI	GCTCTTC	1 cut(s)	290
LmnI	GCTCC	2 cut(s)	25, 390
Lsp1109I	GCAGC	3 cut(s)	444, 466, 547
LweI	GCATC	1 cut(s)	694
MaeI	CTAG	3 cut(s)	278, 729, 865
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	5 cut(s)	70, 328, 417, 572, 806
MalI	GATC	3 cut(s)	131, 213, 762
MboI	GATC	3 cut(s)	129, 211, 760
MboII	GAAGA	5 cut(s)	227, 277, 280, 560, 633
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	2 cut(s)	285, 784
MluCI	AATT	2 cut(s)	636, 752
MlyI	GAGTC	1 cut(s)	679
MmeI	TCCRAC	1 cut(s)	228
MseI	TTAA	3 cut(s)	218, 483, 648
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	2 cut(s)	40, 457
MspI	CCGG	4 cut(s)	154, 413, 700, 829
MspR9I	CCNGG	3 cut(s)	373, 414, 701
Mva1269I	GAATGC	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	373
MwoI	GCNNNNNNNGC	2 cut(s)	374, 436
NciI	CCSGG	2 cut(s)	414, 701
NcoI	CCATGG	1 cut(s)	23
NdeI	CATATG	1 cut(s)	16
NdeII	GATC	3 cut(s)	129, 211, 760
NlaIV	GGNNCC	4 cut(s)	213, 343, 833, 859
NmuCI	GTSAC	4 cut(s)	70, 417, 572, 806
NspI	RCATGY	4 cut(s)	11, 50, 93, 635
PaeI	GCATGC	1 cut(s)	635
PaeR7I	CTCGAG	2 cut(s)	465, 735
PciI	ACATGT	1 cut(s)	46
PciSI	GCTCTTC	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	858
PctI	GAATGC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	719
PfoI	TCCNGGA	1 cut(s)	699
PkrI	GCNGC	4 cut(s)	406, 456, 459, 562
PleI	GAGTC	1 cut(s)	679
PpsI	GAGTC	1 cut(s)	679
PpuMI	RGGWCCY	1 cut(s)	342
PscI	ACATGT	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	648
Psp124BI	GAGCTC	1 cut(s)	285
Psp5II	RGGWCCY	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	371
PspEI	GGTNACC	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	4 cut(s)	213, 343, 833, 859
PspPI	GGNCC	4 cut(s)	342, 406, 831, 858
PspPPI	RGGWCCY	1 cut(s)	342
PspXI	VCTCGAGB	2 cut(s)	465, 735
PsuI	RGATCY	1 cut(s)	211
PvuII	CAGCTG	1 cut(s)	457
RsaI	GTAC	1 cut(s)	733
RsaNI	GTAC	1 cut(s)	732
RseI	CAYNNNNRTG	1 cut(s)	125
SacI	GAGCTC	1 cut(s)	285
SapI	GCTCTTC	1 cut(s)	290
SaqAI	TTAA	3 cut(s)	218, 483, 648
SatI	GCNGC	4 cut(s)	405, 455, 458, 561
Sau3AI	GATC	3 cut(s)	129, 211, 760
Sau96I	GGNCC	4 cut(s)	342, 406, 831, 858
ScaI	AGTACT	1 cut(s)	733
SchI	GAGTC	1 cut(s)	679
ScrFI	CCNGG	3 cut(s)	373, 414, 701
SduI	GDGCHC	2 cut(s)	285, 784
SfaNI	GCATC	1 cut(s)	694
Sfr274I	CTCGAG	2 cut(s)	465, 735
SinI	GGWCC	3 cut(s)	342, 831, 858
SlaI	CTCGAG	2 cut(s)	465, 735
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	4 cut(s)	272, 389, 465, 735
SmoI	CTYRAG	4 cut(s)	272, 389, 465, 735
SphI	GCATGC	1 cut(s)	635
Sse9I	AATT	2 cut(s)	636, 752
SsiI	CCGC	2 cut(s)	40, 404
SspI	AATATT	1 cut(s)	487
SspMI	CTAG	3 cut(s)	278, 729, 865
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	3 cut(s)	371, 412, 699
StyI	CCWWGG	2 cut(s)	23, 114
TaaI	ACNGT	2 cut(s)	824, 841
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	2 cut(s)	466, 736
TasI	AATT	2 cut(s)	636, 752
TatI	WGTACW	1 cut(s)	731
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	1 cut(s)	719
Tru1I	TTAA	3 cut(s)	218, 483, 648
Tru9I	TTAA	3 cut(s)	218, 483, 648
TseFI	GTSAC	4 cut(s)	70, 417, 572, 806
TseI	GCWGC	3 cut(s)	454, 457, 560
Tsp45I	GTSAC	4 cut(s)	70, 417, 572, 806
TspDTI	ATGAA	6 cut(s)	67, 227, 280, 374, 526, 561
TspGWI	ACGGA	1 cut(s)	867
VneI	GTGCAC	1 cut(s)	780
VpaK11BI	GGWCC	3 cut(s)	342, 831, 858
VspI	ATTAAT	1 cut(s)	648
XceI	RCATGY	4 cut(s)	11, 50, 93, 635
XcmI	CCANNNNNNNNNTGG	2 cut(s)	21, 179
XhoI	CTCGAG	2 cut(s)	465, 735
XspI	CTAG	3 cut(s)	278, 729, 865
ZrmI	AGTACT	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.