Rh5CG201100

DNA recombination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0014857
Physical Location & Seq
Reverse (-)
20203694 .. 20220080
16387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG201100.1

Sequence Viewer

Length: 759 bp
ATGATGGAATCAAAACTTGAACTTACTTTGGAAAATCTGAGGAGGGAAGATCTGAGAATCACTCTATGGGGCGATGCTGCAAAAAAATTCAGTTTGGAGAGTGTTGAAGCATCAGGTTCAGCAATACTTGCTCTGTTCACATCTTTAAGAGTGACAAAATTCCAACAACAAATTCAAGTATCAACTACAAATCGCTCTTCCATACTCATAAATCCACAGATTGGACAGACACAAGAGTATCAAGCTGACTCTCAAATGAAACTGACTCAAAGAAGATCGACATGGAAGGATTTTATAGATGCCAATTACAAGGAATTGGTAGGCTATCTTTGGTTGCTGCTCAATCATCTGCAACTGTGGGTGGTTCAGGCAGGCACAAAAGAGCTCACCTTTAACGAGGAGAAGACCAAGGTCAAAGACTTGCACCTCAAGCTTCTAGCTGGGATGTTCTTTTTTTTTTTTTTTGCTGGAGCAACTGTTGGAGTAACAGCTCTTCTGACTTCTCACAAACCCAATCTGGGAAGCAGCTTCATGTCATTGATTTCTATCAATCTCTATTTCTCCACTGTGGTAGATGAAGTAAATACAGGTTATCAAGATGGGTGGAGAAATCAGGGTTGTAAAGAAGGATGGCCAGGAACTTCAATGCAATTGTACTTGGTTCTGTATACACCTGCAGATGGCACTAAACAATATTGTCAAGAAGATTTTGCAAAGCAGTGTAGTGGTGCTGCTTGCACTACATGGCAACATGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460
Pfam Domains
Protein Families
DUF223 Helitron_like_N PIF1 REPA_OB_2 Rep_fac-A_C

Protein Analysis

252

Amino Acids

28.57

Weight (kDa)

6.9

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 682
Acc36I ACCTGC 1 cut(s) 682
AccB7I CCANNNNNTGG 1 cut(s) 221
AccI GTMKAC 1 cut(s) 668
AcoI YGGCCR 1 cut(s) 632
AcsI RAATTY 3 cut(s) 86, 158, 171
AfaI GTAC 1 cut(s) 656
AfiI CCNNNNNNNGG 3 cut(s) 221, 518, 680
AgsI TTSAA 4 cut(s) 20, 107, 176, 645
AjnI CCWGG 1 cut(s) 634
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
AluBI AGCT 6 cut(s) 245, 385, 433, 440, 491, 528
AluI AGCT 6 cut(s) 245, 385, 433, 440, 491, 528
Alw21I GWGCWC 1 cut(s) 387
AoxI GGCC 1 cut(s) 632
ApeKI GCWGC 4 cut(s) 77, 337, 525, 731
ApoI RAATTY 3 cut(s) 86, 158, 171
AsuHPI GGTGA 1 cut(s) 379
BaeI ACNNNNGTAYC 2 cut(s) 221, 254
BalI TGGCCA 1 cut(s) 634
BanII GRGCYC 1 cut(s) 387
BarI GAAGNNNNNNTAC 2 cut(s) 477, 509
BbsI GAAGAC 1 cut(s) 410
Bbv12I GWGCWC 1 cut(s) 387
BbvI GCAGC 4 cut(s) 64, 324, 537, 718
BccI CCATC 3 cut(s) 593, 624, 674
BciT130I CCWGG 1 cut(s) 636
BfaI CTAG 1 cut(s) 437
BfmI CTRYAG 1 cut(s) 675
BfuAI ACCTGC 1 cut(s) 682
BglII AGATCT 1 cut(s) 49
BisI GCNGC 4 cut(s) 78, 338, 526, 732
BlsI GCNGC 4 cut(s) 79, 339, 527, 733
Bme1390I CCNGG 1 cut(s) 636
BmrFI CCNGG 1 cut(s) 636
BmsI GCATC 3 cut(s) 64, 119, 289
BoxI GACNNNNGTC 1 cut(s) 410
BpiI GAAGAC 1 cut(s) 410
BplI GAGNNNNNCTC 2 cut(s) 46, 78
BpmI CTGGAG 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 413
BsaBI GATNNNNATC 1 cut(s) 545
BsaJI CCNNGG 1 cut(s) 408
BsaXI ACNNNNNCTCC 2 cut(s) 462, 492
Bsc4I CCNNNNNNNGG 3 cut(s) 221, 518, 680
Bse8I GATNNNNATC 1 cut(s) 545
BseBI CCWGG 1 cut(s) 636
BseDI CCNNGG 1 cut(s) 408
BseGI GGATG 2 cut(s) 450, 635
BseJI GATNNNNATC 1 cut(s) 545
BseLI CCNNNNNNNGG 3 cut(s) 221, 518, 680
BseMII CTCAG 2 cut(s) 29, 44
BseRI GAGGAG 2 cut(s) 55, 413
BseXI GCAGC 4 cut(s) 64, 324, 537, 718
BseYI CCCAGC 1 cut(s) 440
BshFI GGCC 1 cut(s) 634
BsiHKAI GWGCWC 1 cut(s) 387
BslI CCNNNNNNNGG 3 cut(s) 221, 518, 680
BsnI GGCC 1 cut(s) 634
Bsp1286I GDGCHC 1 cut(s) 387
Bsp143I GATC 2 cut(s) 49, 275
BspANI GGCC 1 cut(s) 634
BspCNI CTCAG 2 cut(s) 30, 45
BspMAI CTGCAG 1 cut(s) 679
BspMI ACCTGC 1 cut(s) 682
BspQI GCTCTTC 2 cut(s) 202, 498
BssECI CCNNGG 1 cut(s) 408
BssMI GATC 2 cut(s) 49, 275
BssNAI GTATAC 1 cut(s) 669
BssT1I CCWWGG 1 cut(s) 408
Bst1107I GTATAC 1 cut(s) 669
Bst2UI CCWGG 1 cut(s) 636
Bst4CI ACNGT 3 cut(s) 357, 478, 568
Bst6I CTCTTC 2 cut(s) 202, 498
BstAPI GCANNNNNTGC 1 cut(s) 128
BstC8I GCNNGC 2 cut(s) 373, 736
BstDEI CTNAG 2 cut(s) 38, 53
BstF5I GGATG 2 cut(s) 450, 635
BstKTI GATC 2 cut(s) 52, 278
BstMBI GATC 2 cut(s) 49, 275
BstMWI GCNNNNNNNGC 2 cut(s) 128, 430
BstNI CCWGG 1 cut(s) 636
BstPAI GACNNNNGTC 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 634
BstSFI CTRYAG 1 cut(s) 675
BstV1I GCAGC 4 cut(s) 64, 324, 537, 718
BstV2I GAAGAC 1 cut(s) 410
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BstZ17I GTATAC 1 cut(s) 669
BsuRI GGCC 1 cut(s) 634
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 2 cut(s) 450, 635
BtsI GCAGTG 1 cut(s) 725
BtsIMutI CAGTG 2 cut(s) 564, 725
BveI ACCTGC 1 cut(s) 682
Cac8I GCNNGC 2 cut(s) 373, 736
Csp6I GTAC 1 cut(s) 655
CspCI CAANNNNNGTGG 2 cut(s) 584, 619
CviAII CATG 4 cut(s) 282, 532, 744, 752
CviJI RGCY 8 cut(s) 245, 324, 385, 433, 440, 491, 528, 634
CviKI_1 RGCY 8 cut(s) 245, 324, 385, 433, 440, 491, 528, 634
CviQI GTAC 1 cut(s) 655
DdeI CTNAG 2 cut(s) 38, 53
DpnI GATC 2 cut(s) 51, 277
DpnII GATC 2 cut(s) 49, 275
EaeI YGGCCR 1 cut(s) 632
Eam1104I CTCTTC 2 cut(s) 202, 498
EarI CTCTTC 2 cut(s) 202, 498
Ecl136II GAGCTC 1 cut(s) 385
Eco130I CCWWGG 1 cut(s) 408
Eco24I GRGCYC 1 cut(s) 387
Eco53kI GAGCTC 1 cut(s) 385
EcoICRI GAGCTC 1 cut(s) 385
EcoRII CCWGG 1 cut(s) 634
EcoT14I CCWWGG 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 4 cut(s) 285, 535, 747, 755
FaiI YATR 9 cut(s) 67, 203, 209, 283, 296, 533, 669, 745, 753
FatI CATG 4 cut(s) 281, 531, 743, 751
FblI GTMKAC 1 cut(s) 668
Fnu4HI GCNGC 4 cut(s) 78, 338, 526, 732
FokI GGATG 2 cut(s) 457, 642
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 4 cut(s) 78, 338, 526, 732
FspBI CTAG 1 cut(s) 437
GluI GCNGC 4 cut(s) 78, 338, 526, 732
GsaI CCCAGC 1 cut(s) 444
GsuI CTGGAG 1 cut(s) 489
HaeIII GGCC 1 cut(s) 634
Hin1II CATG 4 cut(s) 285, 535, 747, 755
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 4 cut(s) 8, 57, 248, 265
HphI GGTGA 1 cut(s) 379
Hpy166II GTNNAC 2 cut(s) 138, 669
Hpy188I TCNGA 3 cut(s) 39, 54, 498
Hpy188III TCNNGA 2 cut(s) 596, 701
Hpy8I GTNNAC 2 cut(s) 138, 669
HpyAV CCTTC 2 cut(s) 280, 620
HpyCH4III ACNGT 3 cut(s) 357, 478, 568
HpyCH4V TGCA 7 cut(s) 80, 352, 424, 649, 677, 713, 738
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 430
HpyF3I CTNAG 2 cut(s) 38, 53
Hsp92II CATG 4 cut(s) 285, 535, 747, 755
Kzo9I GATC 2 cut(s) 49, 275
LguI GCTCTTC 2 cut(s) 202, 498
LmnI GCTCC 1 cut(s) 470
Lsp1109I GCAGC 4 cut(s) 64, 324, 537, 718
LweI GCATC 3 cut(s) 64, 119, 289
MaeI CTAG 1 cut(s) 437
MaeIII GTNAC 2 cut(s) 151, 484
MalI GATC 2 cut(s) 51, 277
MboI GATC 2 cut(s) 49, 275
MboII GAAGA 6 cut(s) 59, 189, 285, 415, 485, 716
MfeI CAATTG 1 cut(s) 650
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 387
MlsI TGGCCA 1 cut(s) 634
MluCI AATT 6 cut(s) 86, 158, 171, 304, 314, 650
MluNI TGGCCA 1 cut(s) 634
MlyI GAGTC 2 cut(s) 242, 259
MmeI TCCRAC 2 cut(s) 187, 460
MnlI CCTC 4 cut(s) 33, 36, 391, 437
Mox20I TGGCCA 1 cut(s) 634
MscI TGGCCA 1 cut(s) 634
MseI TTAA 2 cut(s) 146, 393
Msp20I TGGCCA 1 cut(s) 634
MspR9I CCNGG 1 cut(s) 636
MunI CAATTG 1 cut(s) 650
MvaI CCWGG 1 cut(s) 636
MwoI GCNNNNNNNGC 2 cut(s) 128, 430
NdeII GATC 2 cut(s) 49, 275
NlaIII CATG 4 cut(s) 285, 535, 747, 755
NmuCI GTSAC 1 cut(s) 151
PaqCI CACCTGC 1 cut(s) 682
PciSI GCTCTTC 2 cut(s) 202, 498
PfeI GAWTC 2 cut(s) 8, 57
PflMI CCANNNNNTGG 1 cut(s) 221
PkrI GCNGC 4 cut(s) 79, 339, 527, 733
PleI GAGTC 2 cut(s) 242, 259
PpsI GAGTC 2 cut(s) 242, 259
PshAI GACNNNNGTC 1 cut(s) 410
Psp124BI GAGCTC 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 634
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 1 cut(s) 634
PstI CTGCAG 1 cut(s) 679
PsuI RGATCY 1 cut(s) 49
RsaI GTAC 1 cut(s) 656
RsaNI GTAC 1 cut(s) 655
SacI GAGCTC 1 cut(s) 387
SapI GCTCTTC 2 cut(s) 202, 498
SaqAI TTAA 2 cut(s) 146, 393
SatI GCNGC 4 cut(s) 78, 338, 526, 732
Sau3AI GATC 2 cut(s) 49, 275
SchI GAGTC 2 cut(s) 242, 259
ScrFI CCNGG 1 cut(s) 636
SduI GDGCHC 1 cut(s) 387
SfaNI GCATC 3 cut(s) 64, 119, 289
SfcI CTRYAG 1 cut(s) 675
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 6 cut(s) 86, 158, 171, 304, 314, 650
SspI AATATT 1 cut(s) 695
SspMI CTAG 1 cut(s) 437
SstI GAGCTC 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 634
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 3 cut(s) 357, 478, 568
TaqI TCGA 1 cut(s) 278
TasI AATT 6 cut(s) 86, 158, 171, 304, 314, 650
TatI WGTACW 1 cut(s) 654
TfiI GAWTC 2 cut(s) 8, 57
Tru1I TTAA 2 cut(s) 146, 393
Tru9I TTAA 2 cut(s) 146, 393
TscAI CASTG 2 cut(s) 571, 725
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 4 cut(s) 77, 337, 525, 731
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 3 cut(s) 272, 520, 591
TspRI CASTG 2 cut(s) 571, 725
Van91I CCANNNNNTGG 1 cut(s) 221
XapI RAATTY 3 cut(s) 86, 158, 171
XmiI GTMKAC 1 cut(s) 668
XspI CTAG 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.