Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0014857

Physical Location & Seq

Genomic Coordinates Reverse (-)

39211529 .. 39211936

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG220300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGATATCTCGGGACTACTTCTCCTTCTTGATCGACCTCCGTAGCTCCATCCTTAAATCTGAGAACTTGGTTTATCAAATCTCGGTCTCTTTCTTCTTGGCCAACAACAAATCCCAGTCAGGTAATTACCTCACCATGACAAAAATCGCATTCGCCGGCCTTCGACGAGTTCCCCCCGACCTATTCACAGCAGATTCCAAAGTTTCAAAGCTCAATCTTCCAAAGGACCAACCTGACGCCGTTGATCCAAGACCCATCGATCTGTCCTCTTTGCCGTTGGATTTTGACTCCGTTGAAAGTTGGTTAGCAATTTCGACTCCACCAACTCTCAGTGTCACTCTTCTTTCAACTATGGAACTTTGGTATCTCATTAGCCCAGCTACTTCCTGTCAGTGTCGCCCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

15.07

Weight (kDa)

5.25

Isoelectric Point (pI)

52.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014857)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0255591 RchiOBHm_Chr7g0201351
rosa_laevigata	RLG00000034031
rosa_multiflora	Rmu_sc0007618.1_g000021 Rmu_sc0011008.1_g000002
rosa_roxburghii	Rroxscaffold_1G00039500 Rroxscaffold_4G00299840 Rroxscaffold_6G00398260
rosa_samantha	Rh2CG513300 Rh5CG201100 Rh5CG313100 Rh6BG226600 Rh6CG229200 Rh6DG220300 Rh7BG289100 Rh7BG444400
rosa_wichuraiana	Rw4G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	99
AcyI	GRCGYC	1 cut(s)	237
AgsI	TTSAA	3 cut(s)	207, 296, 348
AluBI	AGCT	3 cut(s)	45, 211, 380
AluI	AGCT	3 cut(s)	45, 211, 380
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	1 cut(s)	239
Ama87I	CYCGRG	1 cut(s)	9
AoxI	GGCC	2 cut(s)	99, 157
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	9
AvaII	GGWCC	1 cut(s)	226
BaeI	ACNNNNGTAYC	2 cut(s)	347, 380
BalI	TGGCCA	1 cut(s)	101
BccI	CCATC	2 cut(s)	56, 263
BceAI	ACGGC	2 cut(s)	224, 259
BcoDI	GTCTC	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	226
BmeT110I	CYCGRG	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	226
BmrI	ACTGGG	1 cut(s)	109
BmuI	ACTGGG	1 cut(s)	109
Bsa29I	ATCGAT	1 cut(s)	258
BsaHI	GRCGYC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	115
BseCI	ATCGAT	1 cut(s)	258
BseGI	GGATG	1 cut(s)	48
BseMII	CTCAG	2 cut(s)	51, 343
BseNI	ACTGG	1 cut(s)	115
BseYI	CCCAGC	1 cut(s)	376
BshFI	GGCC	2 cut(s)	101, 159
BshVI	ATCGAT	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	101, 159
Bso31I	GGTCTC	1 cut(s)	91
BsoBI	CYCGRG	1 cut(s)	9
Bsp143I	GATC	3 cut(s)	30, 244, 259
BspANI	GGCC	2 cut(s)	101, 159
BspCNI	CTCAG	2 cut(s)	52, 342
BspDI	ATCGAT	1 cut(s)	258
BspPI	GGATC	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	91
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	115
BssAI	RCCGGY	1 cut(s)	155
BssMI	GATC	3 cut(s)	30, 244, 259
BssNI	GRCGYC	1 cut(s)	237
Bst6I	CTCTTC	1 cut(s)	345
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	3 cut(s)	60, 329, 405
BstF5I	GGATG	1 cut(s)	48
BstKTI	GATC	3 cut(s)	33, 247, 262
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	3 cut(s)	30, 244, 259
Bsu15I	ATCGAT	1 cut(s)	258
BsuRI	GGCC	2 cut(s)	101, 159
BsuTUI	ATCGAT	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	48
BtsIMutI	CAGTG	2 cut(s)	337, 398
Cac8I	GCNNGC	1 cut(s)	157
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	226
ClaI	ATCGAT	1 cut(s)	258
CseI	GACGC	1 cut(s)	245
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	6 cut(s)	45, 101, 159, 211, 375, 380
CviKI_1	RGCY	6 cut(s)	45, 101, 159, 211, 375, 380
DdeI	CTNAG	3 cut(s)	60, 329, 405
DpnI	GATC	3 cut(s)	32, 246, 261
DpnII	GATC	3 cut(s)	30, 244, 259
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	91
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	9
EcoRV	GATATC	1 cut(s)	6
FaeI	CATG	1 cut(s)	139
FaiI	YATR	2 cut(s)	137, 353
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	1 cut(s)	135
FokI	GGATG	1 cut(s)	35
GsaI	CCCAGC	1 cut(s)	380
HaeIII	GGCC	2 cut(s)	101, 159
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	1 cut(s)	139
HinfI	GANTC	3 cut(s)	194, 287, 316
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	2 cut(s)	11, 28
Hpy99I	CGWCG	1 cut(s)	168
HpyAV	CCTTC	2 cut(s)	34, 170
HpyF3I	CTNAG	3 cut(s)	60, 329, 405
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	1 cut(s)	139
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	30, 244, 259
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	6 cut(s)	105, 128, 169, 246, 390, 400
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	3 cut(s)	32, 246, 261
MboI	GATC	3 cut(s)	30, 244, 259
MboII	GAAGA	3 cut(s)	85, 209, 332
MlsI	TGGCCA	1 cut(s)	101
MluCI	AATT	2 cut(s)	124, 309
MluNI	TGGCCA	1 cut(s)	101
MlyI	GAGTC	2 cut(s)	281, 310
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	3 cut(s)	47, 140, 277
Mox20I	TGGCCA	1 cut(s)	101
MroNI	GCCGGC	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	101
MseI	TTAA	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	101
MspI	CCGG	1 cut(s)	156
Mva1269I	GAATGC	1 cut(s)	149
NaeI	GCCGGC	1 cut(s)	157
NdeII	GATC	3 cut(s)	30, 244, 259
NgoMIV	GCCGGC	1 cut(s)	155
NlaIII	CATG	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	334
PctI	GAATGC	1 cut(s)	149
PdiI	GCCGGC	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	194
PleI	GAGTC	2 cut(s)	281, 310
PpsI	GAGTC	2 cut(s)	281, 310
PspFI	CCCAGC	1 cut(s)	376
PspPI	GGNCC	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	54
Sau3AI	GATC	3 cut(s)	30, 244, 259
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	2 cut(s)	281, 310
SetI	ASST	8 cut(s)	39, 47, 124, 132, 183, 213, 235, 382
SinI	GGWCC	1 cut(s)	226
Sse9I	AATT	2 cut(s)	124, 309
TaqI	TCGA	4 cut(s)	33, 163, 258, 314
TaqII	GACCGA	1 cut(s)	73
TasI	AATT	2 cut(s)	124, 309
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	2 cut(s)	337, 398
TseFI	GTSAC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	334
TspGWI	ACGGA	2 cut(s)	29, 280
TspRI	CASTG	2 cut(s)	337, 398
VpaK11BI	GGWCC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.