Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013743

Physical Location & Seq

Genomic Coordinates Forward (+)

18637892 .. 18638802

Gene Structure 911 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17990

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTATCATGAGGAGTGTAGTTTTATCAAGTTTTGTTCTTTGATCCTAAGGCCTTCTCAAGAGTTCGAATTGAGGCAGCCTTTGGATTGGTTAATACATCATCTGAGCTACCACAATTCGGTTGTAGGAGCTTTGCAGAGCGTCAATGCCGTGTTTAGGGCATCCGTGGCATTACTTCAGAACCGGGCTGATGTGGTTTTTGATCCCAGATTGGTCAAGGAAGCGGATAAGGAGAAGCAGAAGAGGGAGTGTGAAAAAATGGGAGATGCCATGAAATCTTTGGAGAACAGAACCTTGGATTCGAAAGGGAGATCGATATCCTTGTTGCTTTGGATGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0010119 GO:0012505 GO:0016020 GO:0023052 GO:0031410 GO:0031982 GO:0031984 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

113

Amino Acids

13.18

Weight (kDa)

8.51

Isoelectric Point (pI)

66.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013743)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g06500
rosa_chinensis	RchiOBHm_Chr7g0200961 RchiOBHm_Chr7g0200971
rosa_laevigata	RLG00000003702 RLG00000003712 RLG00000003714
rosa_roxburghii	Rroxscaffold_1G00030570 Rroxscaffold_3G00255750 Rroxscaffold_3G00255780 Rroxscaffold_5G00343370
rosa_rugosa	Rorug07G0061000 Rorug07G0061100.1
rosa_samantha	Rh2DG073300 Rh4BG090400 Rh4DG118400 Rh7CG196700 Rh7CG197400 Rh7CG197500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	2 cut(s)	37, 197
AcuI	CTGAAG	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	118, 156
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	2 cut(s)	108, 131
AluI	AGCT	2 cut(s)	108, 131
AlwI	GGATC	2 cut(s)	37, 197
AoxI	GGCC	1 cut(s)	50
ApeKI	GCWGC	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	185
AsuII	TTCGAA	2 cut(s)	66, 302
AxyI	CCTNAGG	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	88
BceAI	ACGGC	1 cut(s)	134
BcnI	CCSGG	1 cut(s)	185
BisI	GCNGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	185
BmsI	GCATC	2 cut(s)	170, 256
Bpu14I	TTCGAA	2 cut(s)	66, 302
BpuEI	CTTGAG	1 cut(s)	42
BpuMI	CCSGG	1 cut(s)	185
Bsa29I	ATCGAT	1 cut(s)	314
BsaBI	GATNNNNATC	1 cut(s)	316
BsaJI	CCNNGG	2 cut(s)	165, 294
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 156
Bse21I	CCTNAGG	1 cut(s)	47
Bse8I	GATNNNNATC	1 cut(s)	316
BseCI	ATCGAT	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	165, 294
BseGI	GGATG	2 cut(s)	161, 339
BseJI	GATNNNNATC	1 cut(s)	316
BseLI	CCNNNNNNNGG	2 cut(s)	118, 156
BseMII	CTCAG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	88
BshFI	GGCC	1 cut(s)	52
BshVI	ATCGAT	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	184
BslI	CCNNNNNNNGG	2 cut(s)	118, 156
BsnI	GGCC	1 cut(s)	52
Bsp119I	TTCGAA	2 cut(s)	66, 302
Bsp143I	GATC	3 cut(s)	42, 202, 311
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	1 cut(s)	52
BspCNI	CTCAG	1 cut(s)	96
BspDI	ATCGAT	1 cut(s)	314
BspHI	TCATGA	1 cut(s)	7
BspPI	GGATC	2 cut(s)	37, 197
BspT104I	TTCGAA	2 cut(s)	66, 302
BssECI	CCNNGG	2 cut(s)	165, 294
BssMI	GATC	3 cut(s)	42, 202, 311
BssT1I	CCWWGG	1 cut(s)	294
Bst6I	CTCTTC	1 cut(s)	236
BstBI	TTCGAA	2 cut(s)	66, 302
BstDEI	CTNAG	2 cut(s)	47, 104
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	2 cut(s)	161, 339
BstKTI	GATC	3 cut(s)	45, 205, 314
BstMBI	GATC	3 cut(s)	42, 202, 311
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	88
Bsu15I	ATCGAT	1 cut(s)	314
Bsu36I	CCTNAGG	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	52
BsuTUI	ATCGAT	1 cut(s)	314
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	161, 339
CciI	TCATGA	1 cut(s)	7
ClaI	ATCGAT	1 cut(s)	314
CseI	GACGC	1 cut(s)	130
CviAII	CATG	2 cut(s)	8, 271
CviJI	RGCY	5 cut(s)	52, 79, 108, 131, 188
CviKI_1	RGCY	5 cut(s)	52, 79, 108, 131, 188
DdeI	CTNAG	2 cut(s)	47, 104
DpnI	GATC	3 cut(s)	44, 204, 313
DpnII	GATC	3 cut(s)	42, 202, 311
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	294
Eco147I	AGGCCT	1 cut(s)	52
Eco32I	GATATC	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	161
Eco81I	CCTNAGG	1 cut(s)	47
EcoRV	GATATC	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	2 cut(s)	11, 274
FaiI	YATR	2 cut(s)	9, 272
FatI	CATG	2 cut(s)	7, 270
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	1 cut(s)	148
Fsp4HI	GCNGC	1 cut(s)	77
GluI	GCNGC	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	52
HapII	CCGG	1 cut(s)	184
HgaI	GACGC	1 cut(s)	130
Hin1II	CATG	2 cut(s)	11, 274
HinfI	GANTC	1 cut(s)	299
HpaII	CCGG	1 cut(s)	184
Hpy188I	TCNGA	2 cut(s)	105, 180
Hpy188III	TCNNGA	2 cut(s)	8, 59
HpyAV	CCTTC	1 cut(s)	63
HpyCH4V	TGCA	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	2 cut(s)	47, 104
Hsp92II	CATG	2 cut(s)	11, 274
Kzo9I	GATC	3 cut(s)	42, 202, 311
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	2 cut(s)	197, 220
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	2 cut(s)	170, 256
MalI	GATC	3 cut(s)	44, 204, 313
MboI	GATC	3 cut(s)	42, 202, 311
MboII	GAAGA	1 cut(s)	253
MluCI	AATT	2 cut(s)	68, 115
MnlI	CCTC	3 cut(s)	4, 66, 237
MseI	TTAA	1 cut(s)	92
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	167
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	3 cut(s)	42, 202, 311
NlaIII	CATG	2 cut(s)	11, 274
NspV	TTCGAA	2 cut(s)	66, 302
PagI	TCATGA	1 cut(s)	7
PceI	AGGCCT	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	3 cut(s)	42, 202, 311
ScrFI	CCNGG	1 cut(s)	185
SetI	ASST	3 cut(s)	110, 133, 296
SfaNI	GCATC	2 cut(s)	170, 256
SfuI	TTCGAA	2 cut(s)	66, 302
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse9I	AATT	2 cut(s)	68, 115
SseBI	AGGCCT	1 cut(s)	52
SsiI	CCGC	1 cut(s)	224
StuI	AGGCCT	1 cut(s)	52
StyD4I	CCNGG	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	294
TaqI	TCGA	3 cut(s)	66, 302, 314
TasI	AATT	2 cut(s)	68, 115
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TseI	GCWGC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	287
TspGWI	ACGGA	1 cut(s)	154
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.