RLG00000003702

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013743
Physical Location & Seq
Reverse (-)
51835583 .. 51837839
2257 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003702

Sequence Viewer

Length: 516 bp
ATGTTTGAAATGCAGGCTACTGAAGGAGAACCATCACTGCCCTGGCATGTATCTAGTCACGTTTTTGATCTTGGATTGAATACCTTGCTGAAATTCATTTTAATCAACCTGTACAGGTGGGTACATATGAGAGGTGGTGATTTTAATTACATGCTTCATGGAGTTATAGACATATTAATCAGTTGGAGAAGGACAAAGATGTTGTTGCTCAGGCACAAGCAATTGCAATGCTTGAGTCCTTACCTCAGCTTCCATTTTGTGTTGTTACTGCTCTGCATAACTTTCTTATTGACTCCAAGGCCTTCTCAAGAGTTCGAATTGAGGCAGCCTTTGGATTGGCTAATACATCATGCGAGGTACCACAATTCGGTTATAGGAGCTTTGCAGAGCGTCAATGCTGTGTTTAGGGCATCCATGGCGTTGCTTCAGAACCGGGCTGATGTGGCAGCTGGAAATTCGGAGATCTTAAAGCCTCATAAGATGCTGAACGATGCGGCATCAGAAGGAGAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.73

Weight (kDa)

7.92

Isoelectric Point (pI)

59.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 357
AccB1I GGYRCC 1 cut(s) 357
AciI CCGC 1 cut(s) 494
AcsI RAATTY 2 cut(s) 92, 454
AcuI CTGAAG 2 cut(s) 42, 410
AfaI GTAC 3 cut(s) 113, 123, 359
AfiI CCNNNNNNNGG 1 cut(s) 367
AgsI TTSAA 2 cut(s) 8, 79
AjnI CCWGG 1 cut(s) 41
AluBI AGCT 3 cut(s) 249, 380, 449
AluI AGCT 3 cut(s) 249, 380, 449
AoxI GGCC 1 cut(s) 299
ApeKI GCWGC 2 cut(s) 325, 446
ApoI RAATTY 2 cut(s) 92, 454
AseI ATTAAT 1 cut(s) 176
Asp718I GGTACC 1 cut(s) 357
AsuC2I CCSGG 1 cut(s) 434
AsuHPI GGTGA 1 cut(s) 149
AsuII TTCGAA 1 cut(s) 315
BanI GGYRCC 1 cut(s) 357
BbvCI CCTCAGC 1 cut(s) 245
BbvI GCAGC 2 cut(s) 337, 458
BccI CCATC 1 cut(s) 40
BciT130I CCWGG 1 cut(s) 43
BcnI CCSGG 1 cut(s) 434
BfaI CTAG 1 cut(s) 54
BglII AGATCT 1 cut(s) 462
BisI GCNGC 3 cut(s) 326, 447, 495
BlsI GCNGC 3 cut(s) 327, 448, 496
Bme1390I CCNGG 2 cut(s) 43, 434
BmiI GGNNCC 1 cut(s) 359
BmrFI CCNGG 2 cut(s) 43, 434
BmsI GCATC 4 cut(s) 419, 471, 481, 506
Bpu10I CCTNAGC 2 cut(s) 209, 245
Bpu14I TTCGAA 1 cut(s) 315
BpuEI CTTGAG 2 cut(s) 253, 291
BpuMI CCSGG 1 cut(s) 434
BsaJI CCNNGG 3 cut(s) 41, 296, 414
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse3DI GCAATG 1 cut(s) 233
BseBI CCWGG 1 cut(s) 43
BseDI CCNNGG 3 cut(s) 41, 296, 414
BseGI GGATG 1 cut(s) 410
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMI GCAATG 1 cut(s) 233
BseMII CTCAG 2 cut(s) 223, 259
BseXI GCAGC 2 cut(s) 337, 458
BshFI GGCC 1 cut(s) 301
BshNI GGYRCC 1 cut(s) 357
BsiSI CCGG 1 cut(s) 433
BslI CCNNNNNNNGG 1 cut(s) 367
BsnI GGCC 1 cut(s) 301
Bsp119I TTCGAA 1 cut(s) 315
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 2 cut(s) 67, 462
Bsp19I CCATGG 1 cut(s) 414
BspACI CCGC 1 cut(s) 494
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 2 cut(s) 222, 258
BspLI GGNNCC 1 cut(s) 359
BspT104I TTCGAA 1 cut(s) 315
BspT107I GGYRCC 1 cut(s) 357
BsrDI GCAATG 1 cut(s) 233
BsrGI TGTACA 1 cut(s) 111
BssECI CCNNGG 3 cut(s) 41, 296, 414
BssMI GATC 2 cut(s) 67, 462
BssT1I CCWWGG 2 cut(s) 296, 414
Bst2UI CCWGG 1 cut(s) 43
BstAUI TGTACA 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 2 cut(s) 209, 245
BstDSI CCRYGG 1 cut(s) 414
BstF5I GGATG 1 cut(s) 410
BstKTI GATC 2 cut(s) 70, 465
BstMBI GATC 2 cut(s) 67, 462
BstMWI GCNNNNNNNGC 2 cut(s) 416, 443
BstNI CCWGG 1 cut(s) 43
BstNSI RCATGY 2 cut(s) 50, 154
BstSCI CCNGG 2 cut(s) 41, 432
BstV1I GCAGC 2 cut(s) 337, 458
BstX2I RGATCY 1 cut(s) 462
BstYI RGATCY 1 cut(s) 462
BsuRI GGCC 1 cut(s) 301
BtgI CCRYGG 1 cut(s) 414
BtsCI GGATG 1 cut(s) 410
BtsI GCAGTG 1 cut(s) 35
BtsIMutI CAGTG 1 cut(s) 35
Cac8I GCNNGC 1 cut(s) 15
CseI GACGC 1 cut(s) 379
Csp6I GTAC 3 cut(s) 112, 122, 358
CviAII CATG 5 cut(s) 47, 151, 158, 350, 415
CviJI RGCY 9 cut(s) 17, 249, 301, 328, 340, 380, 437, 449, 472
CviKI_1 RGCY 9 cut(s) 17, 249, 301, 328, 340, 380, 437, 449, 472
CviQI GTAC 3 cut(s) 112, 122, 358
DdeI CTNAG 2 cut(s) 209, 245
DpnI GATC 2 cut(s) 69, 464
DpnII GATC 2 cut(s) 67, 462
Eco130I CCWWGG 2 cut(s) 296, 414
Eco147I AGGCCT 1 cut(s) 301
Eco57I CTGAAG 2 cut(s) 42, 410
EcoRII CCWGG 1 cut(s) 41
EcoT14I CCWWGG 2 cut(s) 296, 414
ErhI CCWWGG 2 cut(s) 296, 414
FaeI CATG 5 cut(s) 50, 154, 161, 353, 418
FatI CATG 5 cut(s) 46, 150, 157, 349, 414
FauNDI CATATG 1 cut(s) 126
Fnu4HI GCNGC 3 cut(s) 326, 447, 495
FokI GGATG 1 cut(s) 397
Fsp4HI GCNGC 3 cut(s) 326, 447, 495
FspBI CTAG 1 cut(s) 54
GluI GCNGC 3 cut(s) 326, 447, 495
HaeIII GGCC 1 cut(s) 301
HapII CCGG 1 cut(s) 433
HgaI GACGC 1 cut(s) 379
Hin1II CATG 5 cut(s) 50, 154, 161, 353, 418
HinfI GANTC 2 cut(s) 235, 292
HpaII CCGG 1 cut(s) 433
HphI GGTGA 1 cut(s) 149
Hpy188I TCNGA 3 cut(s) 429, 460, 502
Hpy188III TCNNGA 1 cut(s) 308
HpyAV CCTTC 4 cut(s) 17, 183, 312, 497
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 4 cut(s) 13, 226, 276, 385
HpyF10VI GCNNNNNNNGC 2 cut(s) 416, 443
HpyF3I CTNAG 2 cut(s) 209, 245
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 5 cut(s) 50, 154, 161, 353, 418
KpnI GGTACC 1 cut(s) 361
Kzo9I GATC 2 cut(s) 67, 462
LmnI GCTCC 1 cut(s) 377
LpnPI CCDG 7 cut(s) 28, 55, 100, 122, 196, 435, 446
Lsp1109I GCAGC 2 cut(s) 337, 458
LweI GCATC 4 cut(s) 419, 471, 481, 506
MaeI CTAG 1 cut(s) 54
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 2 cut(s) 56, 264
MalI GATC 2 cut(s) 69, 464
MboI GATC 2 cut(s) 67, 462
MfeI CAATTG 1 cut(s) 221
MflI RGATCY 1 cut(s) 462
MluCI AATT 6 cut(s) 92, 145, 221, 317, 364, 454
MlyI GAGTC 2 cut(s) 244, 286
MmeI TCCRAC 1 cut(s) 164
MnlI CCTC 5 cut(s) 125, 254, 315, 348, 483
MseI TTAA 4 cut(s) 101, 144, 176, 467
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 1 cut(s) 433
MspR9I CCNGG 2 cut(s) 43, 434
MunI CAATTG 1 cut(s) 221
MvaI CCWGG 1 cut(s) 43
MwoI GCNNNNNNNGC 2 cut(s) 416, 443
NciI CCSGG 1 cut(s) 434
NcoI CCATGG 1 cut(s) 414
NdeI CATATG 1 cut(s) 126
NdeII GATC 2 cut(s) 67, 462
NlaIII CATG 5 cut(s) 50, 154, 161, 353, 418
NlaIV GGNNCC 1 cut(s) 359
NmuCI GTSAC 1 cut(s) 56
NspI RCATGY 2 cut(s) 50, 154
NspV TTCGAA 1 cut(s) 315
PceI AGGCCT 1 cut(s) 301
PkrI GCNGC 3 cut(s) 327, 448, 496
PleI GAGTC 2 cut(s) 243, 286
PpsI GAGTC 2 cut(s) 243, 286
PshBI ATTAAT 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 359
PsuI RGATCY 1 cut(s) 462
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 3 cut(s) 113, 123, 359
RsaNI GTAC 3 cut(s) 112, 122, 358
SaqAI TTAA 4 cut(s) 101, 144, 176, 467
SatI GCNGC 3 cut(s) 326, 447, 495
Sau3AI GATC 2 cut(s) 67, 462
SchI GAGTC 2 cut(s) 244, 286
ScrFI CCNGG 2 cut(s) 43, 434
SfaNI GCATC 4 cut(s) 419, 471, 481, 506
SfuI TTCGAA 1 cut(s) 315
SmlI CTYRAG 2 cut(s) 232, 306
SmoI CTYRAG 2 cut(s) 232, 306
Sse9I AATT 6 cut(s) 92, 145, 221, 317, 364, 454
SseBI AGGCCT 1 cut(s) 301
SsiI CCGC 1 cut(s) 494
SspMI CTAG 1 cut(s) 54
StuI AGGCCT 1 cut(s) 301
StyD4I CCNGG 2 cut(s) 41, 432
StyI CCWWGG 2 cut(s) 296, 414
TaiI ACGT 1 cut(s) 63
TaqI TCGA 1 cut(s) 315
TasI AATT 6 cut(s) 92, 145, 221, 317, 364, 454
TatI WGTACW 1 cut(s) 111
TauI GCSGC 1 cut(s) 497
Tru1I TTAA 4 cut(s) 101, 144, 176, 467
Tru9I TTAA 4 cut(s) 101, 144, 176, 467
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 2 cut(s) 325, 446
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 85, 146
TspRI CASTG 1 cut(s) 42
VspI ATTAAT 1 cut(s) 176
XapI RAATTY 2 cut(s) 92, 454
XceI RCATGY 2 cut(s) 50, 154
XcmI CCANNNNNNNNNTGG 1 cut(s) 39
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.