Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013743

Physical Location & Seq

Genomic Coordinates Forward (+)

40636448 .. 40637093

Gene Structure 646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00030570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGTGCAGCTCGAGGTGGAAGAAGCTTCGCTAGTTGAGGAGTTGAAGGGCGCTGGAAATTGGTGTCCGCACCGTTCGGCCGGGTTGAGACAAGCTCCGAGTTCGGACATCAACCGCAGTCGCTTGTTGGGCACATCGAAGGAGAAACTTGAAGGAGAAATAGAAACACTTCACGATCGGTTGTTGCGACCGCGCTTTGATGTCGATGAGACAAGTAGACAACTTTATAGATGTGGGCCTGGAAAAGTTGGTGACCTTGACTCCCTCATGACTCAAGTTAGGCATCTTCGGCTCAAGGATTCGAAAATGAGGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

105

Amino Acids

11.94

Weight (kDa)

7.83

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013743)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g06500
rosa_chinensis	RchiOBHm_Chr7g0200961 RchiOBHm_Chr7g0200971
rosa_laevigata	RLG00000003702 RLG00000003712 RLG00000003714
rosa_roxburghii	Rroxscaffold_1G00030570 Rroxscaffold_3G00255750 Rroxscaffold_3G00255780 Rroxscaffold_5G00343370
rosa_rugosa	Rorug07G0061000 Rorug07G0061100.1
rosa_samantha	Rh2DG073300 Rh4BG090400 Rh4DG118400 Rh7CG196700 Rh7CG197400 Rh7CG197500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	217
AccII	CGCG	1 cut(s)	193
AciI	CCGC	3 cut(s)	68, 115, 191
AcoI	YGGCCR	1 cut(s)	78
AgsI	TTSAA	2 cut(s)	46, 152
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	3 cut(s)	10, 26, 95
AluI	AGCT	3 cut(s)	10, 26, 95
Alw26I	GTCTC	2 cut(s)	82, 203
Ama87I	CYCGRG	1 cut(s)	11
AoxI	GGCC	2 cut(s)	78, 236
ApeKI	GCWGC	1 cut(s)	7
Asp700I	GAANNNNTTC	1 cut(s)	168
AspLEI	GCGC	2 cut(s)	53, 195
AspS9I	GGNCC	1 cut(s)	236
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	263
AsuII	TTCGAA	1 cut(s)	302
AvaI	CYCGRG	1 cut(s)	11
BaeGI	GKGCMC	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	240
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	2 cut(s)	82, 203
BfaI	CTAG	1 cut(s)	32
BfoI	RGCGCY	1 cut(s)	54
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
Bme1390I	CCNGG	2 cut(s)	82, 240
BmeT110I	CYCGRG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	236
BmrFI	CCNGG	2 cut(s)	82, 240
BmsI	GCATC	1 cut(s)	292
BplI	GAGNNNNNCTC	2 cut(s)	79, 111
Bpu14I	TTCGAA	1 cut(s)	302
BpuEI	CTTGAG	2 cut(s)	258, 278
BpuMI	CCSGG	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
BseBI	CCWGG	1 cut(s)	240
BseRI	GAGGAG	1 cut(s)	53
BseSI	GKGCMC	1 cut(s)	134
BseX3I	CGGCCG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	19
BsgI	GTGCAG	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	193
Bsh1285I	CGRYCG	3 cut(s)	81, 178, 191
BshFI	GGCC	2 cut(s)	80, 238
BsiEI	CGRYCG	3 cut(s)	81, 178, 191
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	81
BsmAI	GTCTC	2 cut(s)	82, 203
BsnI	GGCC	2 cut(s)	80, 238
BsoBI	CYCGRG	1 cut(s)	11
Bsp119I	TTCGAA	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	1 cut(s)	175
BspACI	CCGC	3 cut(s)	68, 115, 191
BspANI	GGCC	2 cut(s)	80, 238
BspFNI	CGCG	1 cut(s)	193
BspHI	TCATGA	1 cut(s)	267
BspT104I	TTCGAA	1 cut(s)	302
BssMI	GATC	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	74
BstBI	TTCGAA	1 cut(s)	302
BstEII	GGTNACC	1 cut(s)	251
BstFNI	CGCG	1 cut(s)	193
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	2 cut(s)	53, 195
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	2 cut(s)	82, 203
BstMBI	GATC	1 cut(s)	175
BstMCI	CGRYCG	3 cut(s)	81, 178, 191
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 289
BstNI	CCWGG	1 cut(s)	240
BstPI	GGTNACC	1 cut(s)	251
BstSCI	CCNGG	2 cut(s)	80, 238
BstSLI	GKGCMC	1 cut(s)	134
BstUI	CGCG	1 cut(s)	193
BstV1I	GCAGC	1 cut(s)	19
BstZI	CGGCCG	1 cut(s)	78
BsuRI	GGCC	2 cut(s)	80, 238
CciI	TCATGA	1 cut(s)	267
CfoI	GCGC	2 cut(s)	53, 195
Cfr13I	GGNCC	1 cut(s)	236
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	6 cut(s)	10, 26, 80, 95, 238, 292
CviKI_1	RGCY	6 cut(s)	10, 26, 80, 95, 238, 292
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	78
EagI	CGGCCG	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	78
Eco52I	CGGCCG	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	11
Eco91I	GGTNACC	1 cut(s)	251
EcoO65I	GGTNACC	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	238
FaeI	CATG	1 cut(s)	271
FaiI	YATR	3 cut(s)	228, 269, 316
FatI	CATG	1 cut(s)	267
FblI	GTMKAC	1 cut(s)	217
Fnu4HI	GCNGC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	8
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	2 cut(s)	52, 194
GluI	GCNGC	1 cut(s)	8
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	2 cut(s)	80, 238
HapII	CCGG	1 cut(s)	81
HhaI	GCGC	2 cut(s)	53, 195
Hin1II	CATG	1 cut(s)	271
Hin6I	GCGC	2 cut(s)	51, 193
HinP1I	GCGC	2 cut(s)	51, 193
HindIII	AAGCTT	1 cut(s)	24
HinfI	GANTC	3 cut(s)	260, 271, 299
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	2 cut(s)	99, 106
Hpy188III	TCNNGA	2 cut(s)	173, 268
Hpy8I	GTNNAC	1 cut(s)	218
HpyAV	CCTTC	3 cut(s)	40, 133, 146
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4V	TGCA	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 289
Hsp92II	CATG	1 cut(s)	271
HspAI	GCGC	2 cut(s)	51, 193
Kzo9I	GATC	1 cut(s)	175
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	4 cut(s)	39, 94, 225, 252
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	2 cut(s)	32, 278
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	1 cut(s)	58
MlyI	GAGTC	2 cut(s)	254, 265
MnlI	CCTC	4 cut(s)	7, 31, 275, 303
MroXI	GAANNNNTTC	1 cut(s)	168
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	2 cut(s)	82, 240
MvaI	CCWGG	1 cut(s)	240
MvnI	CGCG	1 cut(s)	193
MwoI	GCNNNNNNNGC	2 cut(s)	129, 289
NciI	CCSGG	1 cut(s)	82
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	251
NspV	TTCGAA	1 cut(s)	302
PaeR7I	CTCGAG	1 cut(s)	11
PagI	TCATGA	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	184
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	1 cut(s)	9
Ple19I	CGATCG	1 cut(s)	178
PleI	GAGTC	2 cut(s)	254, 265
PpsI	GAGTC	2 cut(s)	254, 265
Psp6I	CCWGG	1 cut(s)	238
PspEI	GGTNACC	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	236
PspXI	VCTCGAGB	1 cut(s)	11
PvuI	CGATCG	1 cut(s)	178
SatI	GCNGC	1 cut(s)	8
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	236
SchI	GAGTC	2 cut(s)	254, 265
ScrFI	CCNGG	2 cut(s)	82, 240
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	5 cut(s)	12, 18, 28, 97, 258
SfaNI	GCATC	1 cut(s)	292
Sfr274I	CTCGAG	1 cut(s)	11
SfuI	TTCGAA	1 cut(s)	302
SlaI	CTCGAG	1 cut(s)	11
SmlI	CTYRAG	3 cut(s)	11, 273, 293
SmoI	CTYRAG	3 cut(s)	11, 273, 293
Sse9I	AATT	1 cut(s)	58
SsiI	CCGC	3 cut(s)	68, 115, 191
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	2 cut(s)	80, 238
TaaI	ACNGT	1 cut(s)	74
TaqI	TCGA	4 cut(s)	12, 137, 204, 302
TasI	AATT	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	299
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	251
XhoI	CTCGAG	1 cut(s)	11
XmiI	GTMKAC	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.