Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0013743

Physical Location & Seq

Genomic Coordinates Forward (+)

15486045 .. 15494359

Gene Structure 8315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG090400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGGAGAGACAAGTCTTAGGAAGGCTGCTGAAGAGGAAGCCAGTAATCTTAAGAGTCAACTGACTCAATGGAAAAGGTCAGAGGCAGCTGGAAATTCAGAGATCTTAAAGCTTCGTAAGATGCTGAAAGATGAGGCACATCAGAAGGAAGACAGTCCCCACATCCGCCGTTCAATACAATCATTTGGTTTGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

65

Amino Acids

7.41

Weight (kDa)

9.22

Isoelectric Point (pI)

89.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013743)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g06500
rosa_chinensis	RchiOBHm_Chr7g0200961 RchiOBHm_Chr7g0200971
rosa_laevigata	RLG00000003702 RLG00000003712 RLG00000003714
rosa_roxburghii	Rroxscaffold_1G00030570 Rroxscaffold_3G00255750 Rroxscaffold_3G00255780 Rroxscaffold_5G00343370
rosa_rugosa	Rorug07G0061000 Rorug07G0061100.1
rosa_samantha	Rh2DG073300 Rh4BG090400 Rh4DG118400 Rh7CG196700 Rh7CG197400 Rh7CG197500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	94
AcuI	CTGAAG	1 cut(s)	51
AflII	CTTAAG	1 cut(s)	50
AgsI	TTSAA	1 cut(s)	174
AluBI	AGCT	2 cut(s)	89, 112
AluI	AGCT	2 cut(s)	89, 112
Alw26I	GTCTC	1 cut(s)	2
ApeKI	GCWGC	2 cut(s)	26, 86
ApoI	RAATTY	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	13, 98
BceAI	ACGGC	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	2
BfrI	CTTAAG	1 cut(s)	50
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	2 cut(s)	27, 87
BlsI	GCNGC	2 cut(s)	28, 88
BmsI	GCATC	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	42
BseXI	GCAGC	2 cut(s)	13, 98
BslFI	GGGAC	1 cut(s)	141
BsmAI	GTCTC	1 cut(s)	2
BsmFI	GGGAC	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	102
BspACI	CCGC	1 cut(s)	166
BspTI	CTTAAG	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	42
BssMI	GATC	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	27
BstAFI	CTTAAG	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	162
BstKTI	GATC	1 cut(s)	105
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	13, 98
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	162
CviJI	RGCY	4 cut(s)	26, 41, 89, 112
CviKI_1	RGCY	4 cut(s)	26, 41, 89, 112
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
EciI	GGCGGA	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	51
FaiI	YATR	1 cut(s)	196
FaqI	GGGAC	1 cut(s)	141
Fnu4HI	GCNGC	2 cut(s)	27, 87
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	2 cut(s)	27, 87
GluI	GCNGC	2 cut(s)	27, 87
HincII	GTYRAC	1 cut(s)	59
HindII	GTYRAC	1 cut(s)	59
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	2 cut(s)	55, 64
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188I	TCNGA	3 cut(s)	82, 100, 144
Hpy8I	GTNNAC	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	16, 139
HpyCH4III	ACNGT	1 cut(s)	155
HpyF3I	CTNAG	1 cut(s)	17
Kzo9I	GATC	1 cut(s)	102
LpnPI	CCDG	2 cut(s)	55, 75
Lsp1109I	GCAGC	2 cut(s)	13, 98
LweI	GCATC	1 cut(s)	111
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MboII	GAAGA	2 cut(s)	44, 161
MflI	RGATCY	1 cut(s)	102
MluCI	AATT	1 cut(s)	94
MlyI	GAGTC	2 cut(s)	58, 64
MnlI	CCTC	3 cut(s)	28, 76, 127
MseI	TTAA	2 cut(s)	51, 107
MspA1I	CMGCKG	1 cut(s)	89
MspCI	CTTAAG	1 cut(s)	50
NdeII	GATC	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	28, 88
PleI	GAGTC	2 cut(s)	58, 63
PpsI	GAGTC	2 cut(s)	58, 63
PsuI	RGATCY	1 cut(s)	102
PvuII	CAGCTG	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	51, 107
SatI	GCNGC	2 cut(s)	27, 87
Sau3AI	GATC	1 cut(s)	102
SchI	GAGTC	2 cut(s)	58, 64
SetI	ASST	3 cut(s)	80, 91, 114
SfaNI	GCATC	1 cut(s)	111
SgeI	CNNG	3 cut(s)	24, 54, 102
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	1 cut(s)	94
SsiI	CCGC	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	155
TasI	AATT	1 cut(s)	94
Tru1I	TTAA	2 cut(s)	51, 107
Tru9I	TTAA	2 cut(s)	51, 107
TseI	GCWGC	2 cut(s)	26, 86
Vha464I	CTTAAG	1 cut(s)	50
XapI	RAATTY	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.