Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0013743

Physical Location & Seq

Genomic Coordinates Forward (+)

4432432 .. 4433607

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0061000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGAGTACCTCCCGCAGGACCTAATAGATGAAATTGTTTTAAGACTCCCTGTGAAGTGTCTAATCCGATTTTCTTTCGTTTCAAAGCTATGGAAGGCTGTCATCCACAGCAAAGACTTCATTCGAAAGCATCGTCAACGCTTTAATCTCAACCACTTAAATGATTTTGCCCTCATTCGCCATCATGTTGAATCTGATCCTCATGATCACTTCTATTCTGTAACCTTTTCTGGTGATGATACCACGTTAGAAGAAGAACGATTGAAGCATCCATTATATTCCCTCGAAGAAAGTGATAGACTTGGGCTTCAATCTGGCATCGTTGCTCTTTGCAATGGATTGATTTTACTTCATGTTAGAAGTAAGAAATATGATCTTGGTCTCTTTTTATGGAACCCCATGATTTCAAAGCATAAAATTATACCCACCCCCTTCAAATGGGCACGAGGACAATTCTCGAATCGGATGTACGGATTGGGCTATCATTCTGCTGAAGATGACTTGAAGGTGTTGGTTCTTACCGAAGATTATGATAATAGGTCGAATTCTCTTTTTGGACAAAGAAATTTGACGATGGATTTAAAAGTCTACAGCGTAGCATTAAACAGATGGAAAAGGATAGAAAAGCTTCCACCCAGTAATCTTCGAATTTATGTAAATCATCAATCGAATATGGTGTCAATGAACGATTCTCGTGTAGCTTGGCTGATGAGAGACAATGATCAATTAGATCTGTACATGGTTGTGACTTTTGATCTTGTGAAGGAGGAGTATCAGTTTTTTCGTGTTCCGATTCTTATTCGGGGTCCGGGAGTAGTAAAACTGATGGCATTCGGAGGCTTCTTATGCTTTTTGCGCTGTTATACAGGTGTCTGTATAAATGTTTGGTTTACAAAAGATTGCGATTCTTGCTGGTCGTTGGAGCCTGTTGTGTTGAATTGCAAGCCTTTATTCTTTGATGGTGAGAGGTTTCTCTTGAACCAGTTGAACCATGATGGCAATGATAAACTGACTTGGTACAATATAAAGACACAAAAACATGATTATGGGACAGAAATTCGTCGGCATACTCGCAGCAATCGGTGTACAGAAACAACTCTATGTGTGGGAGACCTCAGTCTTCTACTTGATGCTGATCCTGATGGTCGTCGTAGCTACTTTGGCCATGTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF572

Protein Analysis

391

Amino Acids

45.91

Weight (kDa)

8.25

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	4 - 42	9.7e-09	F-box domain
FBA_3	PF08268	104 - 313	1.5e-10	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013743)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g06500
rosa_chinensis	RchiOBHm_Chr7g0200961 RchiOBHm_Chr7g0200971
rosa_laevigata	RLG00000003702 RLG00000003712 RLG00000003714
rosa_roxburghii	Rroxscaffold_1G00030570 Rroxscaffold_3G00255750 Rroxscaffold_3G00255780 Rroxscaffold_5G00343370
rosa_rugosa	Rorug07G0061000 Rorug07G0061100.1
rosa_samantha	Rh2DG073300 Rh4BG090400 Rh4DG118400 Rh7CG196700 Rh7CG197400 Rh7CG197500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	588
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	2 cut(s)	191, 1130
AcoI	YGGCCR	1 cut(s)	1162
AcsI	RAATTY	4 cut(s)	544, 565, 648, 1056
AcuI	CTGAAG	1 cut(s)	513
AfaI	GTAC	5 cut(s)	8, 470, 737, 1019, 1087
AfiI	CCNNNNNNNGG	2 cut(s)	16, 438
AluBI	AGCT	4 cut(s)	88, 628, 701, 1155
AluI	AGCT	4 cut(s)	88, 628, 701, 1155
Alw26I	GTCTC	3 cut(s)	386, 708, 1104
AlwI	GGATC	2 cut(s)	191, 1130
AoxI	GGCC	1 cut(s)	1162
ApeKI	GCWGC	1 cut(s)	1074
ApoI	RAATTY	4 cut(s)	544, 565, 648, 1056
ArsI	GACNNNNNNTTYG	4 cut(s)	118, 150, 662, 694
Asp700I	GAANNNNTTC	1 cut(s)	627
AspLEI	GCGC	1 cut(s)	858
AspS9I	GGNCC	2 cut(s)	19, 806
AsuC2I	CCSGG	1 cut(s)	810
AsuHPI	GGTGA	2 cut(s)	245, 974
AsuII	TTCGAA	2 cut(s)	124, 646
AvaII	GGWCC	2 cut(s)	19, 806
BaeGI	GKGCMC	1 cut(s)	445
BalI	TGGCCA	1 cut(s)	1164
BauI	CACGAG	2 cut(s)	444, 693
BbsI	GAAGAC	1 cut(s)	1112
BbvI	GCAGC	1 cut(s)	1086
BccI	CCATC	7 cut(s)	189, 568, 603, 820, 953, 989, 1136
BclI	TGATCA	2 cut(s)	205, 721
BcnI	CCSGG	1 cut(s)	810
BcoDI	GTCTC	3 cut(s)	386, 708, 1104
BfmI	CTRYAG	1 cut(s)	589
BglII	AGATCT	1 cut(s)	730
BisI	GCNGC	1 cut(s)	1075
BlsI	GCNGC	1 cut(s)	1076
Bme1390I	CCNGG	1 cut(s)	810
Bme18I	GGWCC	2 cut(s)	19, 806
BmgT120I	GGNCC	2 cut(s)	19, 806
BmiI	GGNNCC	3 cut(s)	395, 807, 924
BmrFI	CCNGG	1 cut(s)	810
BmrI	ACTGGG	1 cut(s)	630
BmsI	GCATC	4 cut(s)	139, 277, 327, 1120
BmuI	ACTGGG	1 cut(s)	630
BoxI	GACNNNNGTC	1 cut(s)	1116
BpiI	GAAGAC	1 cut(s)	1112
Bpu14I	TTCGAA	2 cut(s)	124, 646
BpuMI	CCSGG	1 cut(s)	810
BsaBI	GATNNNNATC	1 cut(s)	1134
BsaI	GGTCTC	2 cut(s)	386, 1104
BsaXI	ACNNNNNCTCC	2 cut(s)	761, 791
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 438
Bse1I	ACTGG	2 cut(s)	636, 982
Bse3DI	GCAATG	2 cut(s)	340, 1006
Bse8I	GATNNNNATC	1 cut(s)	1134
BseGI	GGATG	3 cut(s)	102, 268, 471
BseJI	GATNNNNATC	1 cut(s)	1134
BseLI	CCNNNNNNNGG	2 cut(s)	16, 438
BseMI	GCAATG	2 cut(s)	340, 1006
BseMII	CTCAG	1 cut(s)	1129
BseNI	ACTGG	2 cut(s)	636, 982
BseRI	GAGGAG	1 cut(s)	782
BseSI	GKGCMC	1 cut(s)	445
BseXI	GCAGC	1 cut(s)	1086
BshFI	GGCC	1 cut(s)	1164
BsiSI	CCGG	1 cut(s)	809
BslFI	GGGAC	1 cut(s)	1063
BslI	CCNNNNNNNGG	2 cut(s)	16, 438
BsmAI	GTCTC	3 cut(s)	386, 708, 1104
BsmFI	GGGAC	1 cut(s)	1063
BsmI	GAATGC	1 cut(s)	830
BsnI	GGCC	1 cut(s)	1164
Bso31I	GGTCTC	2 cut(s)	386, 1104
Bsp119I	TTCGAA	2 cut(s)	124, 646
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp1407I	TGTACA	2 cut(s)	735, 1085
Bsp143I	GATC	7 cut(s)	196, 205, 373, 721, 730, 754, 1135
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	1 cut(s)	1164
BspCNI	CTCAG	1 cut(s)	1128
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	3 cut(s)	395, 807, 924
BspPI	GGATC	2 cut(s)	191, 1130
BspT104I	TTCGAA	2 cut(s)	124, 646
BspTNI	GGTCTC	2 cut(s)	386, 1104
BsrDI	GCAATG	2 cut(s)	340, 1006
BsrGI	TGTACA	2 cut(s)	735, 1085
BsrI	ACTGG	2 cut(s)	636, 982
BssMI	GATC	7 cut(s)	196, 205, 373, 721, 730, 754, 1135
BssSI	CACGAG	2 cut(s)	444, 693
Bst2BI	CACGAG	2 cut(s)	444, 693
BstAUI	TGTACA	2 cut(s)	735, 1085
BstBI	TTCGAA	2 cut(s)	124, 646
BstC8I	GCNNGC	1 cut(s)	944
BstDEI	CTNAG	1 cut(s)	1115
BstENI	CCTNNNNNAGG	1 cut(s)	14
BstF5I	GGATG	3 cut(s)	102, 268, 471
BstHHI	GCGC	1 cut(s)	858
BstKTI	GATC	7 cut(s)	199, 208, 376, 724, 733, 757, 1138
BstMAI	GTCTC	3 cut(s)	386, 708, 1104
BstMBI	GATC	7 cut(s)	196, 205, 373, 721, 730, 754, 1135
BstMWI	GCNNNNNNNGC	4 cut(s)	846, 855, 909, 1161
BstPAI	GACNNNNGTC	1 cut(s)	1116
BstSCI	CCNGG	1 cut(s)	808
BstSFI	CTRYAG	1 cut(s)	589
BstSLI	GKGCMC	1 cut(s)	445
BstV1I	GCAGC	1 cut(s)	1086
BstV2I	GAAGAC	1 cut(s)	1112
BstX2I	RGATCY	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	730
BsuRI	GGCC	1 cut(s)	1164
BtsCI	GGATG	3 cut(s)	102, 268, 471
Cac8I	GCNNGC	1 cut(s)	944
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	1 cut(s)	858
Cfr13I	GGNCC	2 cut(s)	19, 806
Csp6I	GTAC	5 cut(s)	7, 469, 736, 1018, 1086
CviAII	CATG	8 cut(s)	185, 203, 353, 400, 739, 992, 1040, 1166
CviQI	GTAC	5 cut(s)	7, 469, 736, 1018, 1086
DdeI	CTNAG	1 cut(s)	1115
DpnI	GATC	7 cut(s)	198, 207, 375, 723, 732, 756, 1137
DpnII	GATC	7 cut(s)	196, 205, 373, 721, 730, 754, 1135
DraI	TTTAAA	1 cut(s)	582
EaeI	YGGCCR	1 cut(s)	1162
Eco31I	GGTCTC	2 cut(s)	386, 1104
Eco47I	GGWCC	2 cut(s)	19, 806
Eco57I	CTGAAG	1 cut(s)	513
EcoNI	CCTNNNNNAGG	1 cut(s)	14
EcoO109I	RGGNCCY	1 cut(s)	19
EcoRI	GAATTC	1 cut(s)	544
FaeI	CATG	8 cut(s)	188, 206, 356, 403, 742, 995, 1043, 1169
FaqI	GGGAC	1 cut(s)	1063
FatI	CATG	8 cut(s)	184, 202, 352, 399, 738, 991, 1039, 1165
FauI	CCCGC	1 cut(s)	21
FbaI	TGATCA	2 cut(s)	205, 721
FblI	GTMKAC	1 cut(s)	588
Fnu4HI	GCNGC	1 cut(s)	1075
FokI	GGATG	3 cut(s)	89, 255, 478
Fsp4HI	GCNGC	1 cut(s)	1075
GlaI	GCGC	1 cut(s)	857
GluI	GCNGC	1 cut(s)	1075
HaeIII	GGCC	1 cut(s)	1164
HapII	CCGG	1 cut(s)	809
HhaI	GCGC	1 cut(s)	858
Hin1II	CATG	8 cut(s)	188, 206, 356, 403, 742, 995, 1043, 1169
Hin6I	GCGC	1 cut(s)	856
HinP1I	GCGC	1 cut(s)	856
HincII	GTYRAC	1 cut(s)	137
HindII	GTYRAC	1 cut(s)	137
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	6 cut(s)	45, 191, 460, 689, 793, 905
HpaII	CCGG	1 cut(s)	809
HphI	GGTGA	2 cut(s)	245, 974
Hpy166II	GTNNAC	4 cut(s)	137, 589, 891, 1086
Hpy188I	TCNGA	5 cut(s)	68, 196, 465, 792, 836
Hpy188III	TCNNGA	4 cut(s)	203, 457, 976, 1139
Hpy8I	GTNNAC	4 cut(s)	137, 589, 891, 1086
Hpy99I	CGWCG	2 cut(s)	1065, 1152
HpyAV	CCTTC	4 cut(s)	88, 442, 499, 757
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	2 cut(s)	333, 942
HpyF10VI	GCNNNNNNNGC	4 cut(s)	846, 855, 909, 1161
HpyF3I	CTNAG	1 cut(s)	1115
HpySE526I	ACGT	1 cut(s)	245
Hsp92II	CATG	8 cut(s)	188, 206, 356, 403, 742, 995, 1043, 1169
HspAI	GCGC	1 cut(s)	856
Ksp22I	TGATCA	2 cut(s)	205, 721
Kzo9I	GATC	7 cut(s)	196, 205, 373, 721, 730, 754, 1135
LmnI	GCTCC	1 cut(s)	922
Lsp1109I	GCAGC	1 cut(s)	1086
LweI	GCATC	4 cut(s)	139, 277, 327, 1120
MaeII	ACGT	1 cut(s)	245
MaeIII	GTNAC	2 cut(s)	220, 745
MalI	GATC	7 cut(s)	198, 207, 375, 723, 732, 756, 1137
MboI	GATC	7 cut(s)	196, 205, 373, 721, 730, 754, 1135
MboII	GAAGA	7 cut(s)	263, 266, 299, 506, 536, 635, 1112
MflI	RGATCY	1 cut(s)	730
MhlI	GDGCHC	1 cut(s)	445
MlsI	TGGCCA	1 cut(s)	1164
MluCI	AATT	9 cut(s)	33, 417, 452, 544, 565, 648, 725, 937, 1056
MluNI	TGGCCA	1 cut(s)	1164
MlyI	GAGTC	1 cut(s)	39
MmeI	TCCRAC	1 cut(s)	900
MnlI	CCTC	9 cut(s)	20, 182, 210, 293, 440, 760, 830, 960, 1124
Mox20I	TGGCCA	1 cut(s)	1164
MroXI	GAANNNNTTC	1 cut(s)	627
MscI	TGGCCA	1 cut(s)	1164
MseI	TTAA	5 cut(s)	41, 144, 158, 581, 602
MslI	CAYNNNNRTG	3 cut(s)	159, 743, 1044
Msp20I	TGGCCA	1 cut(s)	1164
MspI	CCGG	1 cut(s)	809
MspR9I	CCNGG	1 cut(s)	810
Mva1269I	GAATGC	1 cut(s)	830
MwoI	GCNNNNNNNGC	4 cut(s)	846, 855, 909, 1161
NciI	CCSGG	1 cut(s)	810
NdeII	GATC	7 cut(s)	196, 205, 373, 721, 730, 754, 1135
NlaIII	CATG	8 cut(s)	188, 206, 356, 403, 742, 995, 1043, 1169
NlaIV	GGNNCC	3 cut(s)	395, 807, 924
NmuCI	GTSAC	1 cut(s)	745
NspV	TTCGAA	2 cut(s)	124, 646
PagI	TCATGA	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	1 cut(s)	130
PctI	GAATGC	1 cut(s)	830
PdmI	GAANNNNTTC	1 cut(s)	627
PfeI	GAWTC	5 cut(s)	191, 460, 689, 793, 905
PfoI	TCCNGGA	1 cut(s)	808
PkrI	GCNGC	1 cut(s)	1076
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
PpuMI	RGGWCCY	1 cut(s)	19
PshAI	GACNNNNGTC	1 cut(s)	1116
Psp5II	RGGWCCY	1 cut(s)	19
PspN4I	GGNNCC	3 cut(s)	395, 807, 924
PspPI	GGNCC	2 cut(s)	19, 806
PspPPI	RGGWCCY	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	730
RsaI	GTAC	5 cut(s)	8, 470, 737, 1019, 1087
RsaNI	GTAC	5 cut(s)	7, 469, 736, 1018, 1086
RseI	CAYNNNNRTG	3 cut(s)	159, 743, 1044
SaqAI	TTAA	5 cut(s)	41, 144, 158, 581, 602
SatI	GCNGC	1 cut(s)	1075
Sau3AI	GATC	7 cut(s)	196, 205, 373, 721, 730, 754, 1135
Sau96I	GGNCC	2 cut(s)	19, 806
SchI	GAGTC	1 cut(s)	39
ScrFI	CCNGG	1 cut(s)	810
SduI	GDGCHC	1 cut(s)	445
SfaNI	GCATC	4 cut(s)	139, 277, 327, 1120
SfcI	CTRYAG	1 cut(s)	589
SfuI	TTCGAA	2 cut(s)	124, 646
SinI	GGWCC	2 cut(s)	19, 806
SmiMI	CAYNNNNRTG	3 cut(s)	159, 743, 1044
Sse9I	AATT	9 cut(s)	33, 417, 452, 544, 565, 648, 725, 937, 1056
SsiI	CCGC	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	808
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	6 cut(s)	124, 285, 458, 542, 646, 668
TasI	AATT	9 cut(s)	33, 417, 452, 544, 565, 648, 725, 937, 1056
TatI	WGTACW	2 cut(s)	735, 1085
TfiI	GAWTC	5 cut(s)	191, 460, 689, 793, 905
Tru1I	TTAA	5 cut(s)	41, 144, 158, 581, 602
Tru9I	TTAA	5 cut(s)	41, 144, 158, 581, 602
TseFI	GTSAC	1 cut(s)	745
TseI	GCWGC	1 cut(s)	1074
Tsp45I	GTSAC	1 cut(s)	745
TspDTI	ATGAA	4 cut(s)	45, 109, 341, 698
TspGWI	ACGGA	1 cut(s)	486
VpaK11BI	GGWCC	2 cut(s)	19, 806
XagI	CCTNNNNNAGG	1 cut(s)	14
XapI	RAATTY	4 cut(s)	544, 565, 648, 1056
XmiI	GTMKAC	1 cut(s)	588
XmnI	GAANNNNTTC	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.