Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0013743

Physical Location & Seq

Genomic Coordinates Reverse (-)

18745642 .. 18746234

Gene Structure 593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG118400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAATATCATGATCCTAAGGCCTTCTCAAGAGTTCGAATTGAGGCAGCCTTTGGATTGGCTAATACATCATCTGAGGTACCACAATTCGGTTATAGGAGCTTTGCAGAGCGTCAATGCCATTTTTAGGGCATCAGTGGCATTTTTTCAGAACGGGGCTGATGTGGTTTTTGATCCCAGATTGGTCAAGGAAGCGGATAAGGAGAAGCAGAAGAGGGAGTGTGAAAAAAATGGGAGATGCCATGAAATCTCTGGAGAACAGAACCTTGGATTCGAAAGGGAGATTGATATCCTTGTTGCTTTGGATGAGATGAAGTCCATGAAGGTAGATGCCTCAGTAGTTGTTACCAGGTGTCGAGATCATGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0010119 GO:0012505 GO:0016020 GO:0023052 GO:0031410 GO:0031982 GO:0031984 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

123

Amino Acids

14.25

Weight (kDa)

5.94

Isoelectric Point (pI)

47.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013743)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g06500
rosa_chinensis	RchiOBHm_Chr7g0200961 RchiOBHm_Chr7g0200971
rosa_laevigata	RLG00000003702 RLG00000003712 RLG00000003714
rosa_roxburghii	Rroxscaffold_1G00030570 Rroxscaffold_3G00255750 Rroxscaffold_3G00255780 Rroxscaffold_5G00343370
rosa_rugosa	Rorug07G0061000 Rorug07G0061100.1
rosa_samantha	Rh2DG073300 Rh4BG090400 Rh4DG118400 Rh7CG196700 Rh7CG197400 Rh7CG197500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	78
AccB1I	GGYRCC	1 cut(s)	78
AciI	CCGC	1 cut(s)	194
AclWI	GGATC	2 cut(s)	7, 167
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	2 cut(s)	88, 126
AjnI	CCWGG	1 cut(s)	347
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
AlwI	GGATC	2 cut(s)	7, 167
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	46
Asp718I	GGTACC	1 cut(s)	78
AsuII	TTCGAA	2 cut(s)	36, 273
AxyI	CCTNAGG	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	349
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme1390I	CCNGG	1 cut(s)	349
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	349
BmsI	GCATC	3 cut(s)	140, 227, 319
BpmI	CTGGAG	1 cut(s)	273
Bpu14I	TTCGAA	2 cut(s)	36, 273
BpuEI	CTTGAG	1 cut(s)	12
BsaBI	GATNNNNATC	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 126
Bse21I	CCTNAGG	1 cut(s)	17
Bse8I	GATNNNNATC	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	1 cut(s)	310
BseJI	GATNNNNATC	1 cut(s)	287
BseLI	CCNNNNNNNGG	2 cut(s)	88, 126
BseMII	CTCAG	2 cut(s)	65, 348
BseXI	GCAGC	1 cut(s)	58
BshFI	GGCC	1 cut(s)	22
BshNI	GGYRCC	1 cut(s)	78
BslI	CCNNNNNNNGG	2 cut(s)	88, 126
BsnI	GGCC	1 cut(s)	22
Bsp119I	TTCGAA	2 cut(s)	36, 273
Bsp143I	GATC	3 cut(s)	12, 172, 358
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	1 cut(s)	22
BspCNI	CTCAG	2 cut(s)	66, 347
BspHI	TCATGA	2 cut(s)	9, 361
BspLI	GGNNCC	1 cut(s)	80
BspPI	GGATC	2 cut(s)	7, 167
BspT104I	TTCGAA	2 cut(s)	36, 273
BspT107I	GGYRCC	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	3 cut(s)	12, 172, 358
BssT1I	CCWWGG	1 cut(s)	265
Bst2UI	CCWGG	1 cut(s)	349
Bst6I	CTCTTC	1 cut(s)	206
BstBI	TTCGAA	2 cut(s)	36, 273
BstDEI	CTNAG	3 cut(s)	17, 74, 334
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	3 cut(s)	15, 175, 361
BstMBI	GATC	3 cut(s)	12, 172, 358
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	347
BstV1I	GCAGC	1 cut(s)	58
Bsu36I	CCTNAGG	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	141
CciI	TCATGA	2 cut(s)	9, 361
CseI	GACGC	1 cut(s)	100
CsiI	ACCWGGT	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	4 cut(s)	10, 242, 319, 362
CviJI	RGCY	5 cut(s)	22, 49, 61, 101, 158
CviKI_1	RGCY	5 cut(s)	22, 49, 61, 101, 158
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	3 cut(s)	17, 74, 334
DpnI	GATC	3 cut(s)	14, 174, 360
DpnII	GATC	3 cut(s)	12, 172, 358
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	265
Eco147I	AGGCCT	1 cut(s)	22
Eco32I	GATATC	1 cut(s)	289
Eco81I	CCTNAGG	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	347
EcoRV	GATATC	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	265
FaeI	CATG	4 cut(s)	13, 245, 322, 365
FaiI	YATR	5 cut(s)	11, 95, 243, 320, 363
FatI	CATG	4 cut(s)	9, 241, 318, 361
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	47
GluI	GCNGC	1 cut(s)	47
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	22
HgaI	GACGC	1 cut(s)	100
Hin1II	CATG	4 cut(s)	13, 245, 322, 365
HinfI	GANTC	1 cut(s)	270
Hpy188I	TCNGA	2 cut(s)	75, 150
Hpy188III	TCNNGA	5 cut(s)	10, 29, 252, 356, 362
HpyAV	CCTTC	2 cut(s)	33, 316
HpyCH4V	TGCA	1 cut(s)	106
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	3 cut(s)	17, 74, 334
Hsp92II	CATG	4 cut(s)	13, 245, 322, 365
KpnI	GGTACC	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	12, 172, 358
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	4 cut(s)	190, 237, 334, 361
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	3 cut(s)	140, 227, 319
MabI	ACCWGGT	1 cut(s)	347
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	3 cut(s)	14, 174, 360
MboI	GATC	3 cut(s)	12, 172, 358
MboII	GAAGA	1 cut(s)	223
MluCI	AATT	2 cut(s)	38, 85
MnlI	CCTC	4 cut(s)	36, 69, 207, 343
MspR9I	CCNGG	1 cut(s)	349
MvaI	CCWGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeII	GATC	3 cut(s)	12, 172, 358
NlaIII	CATG	4 cut(s)	13, 245, 322, 365
NlaIV	GGNNCC	1 cut(s)	80
NspV	TTCGAA	2 cut(s)	36, 273
PagI	TCATGA	2 cut(s)	9, 361
PceI	AGGCCT	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	270
PkrI	GCNGC	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	80
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	3 cut(s)	12, 172, 358
ScrFI	CCNGG	1 cut(s)	349
SetI	ASST	5 cut(s)	80, 103, 267, 327, 353
SexAI	ACCWGGT	1 cut(s)	347
SfaNI	GCATC	3 cut(s)	140, 227, 319
SfuI	TTCGAA	2 cut(s)	36, 273
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
Sse9I	AATT	2 cut(s)	38, 85
SseBI	AGGCCT	1 cut(s)	22
SsiI	CCGC	1 cut(s)	194
StuI	AGGCCT	1 cut(s)	22
StyD4I	CCNGG	1 cut(s)	347
StyI	CCWWGG	1 cut(s)	265
TaqI	TCGA	3 cut(s)	36, 273, 355
TasI	AATT	2 cut(s)	38, 85
TfiI	GAWTC	1 cut(s)	270
TscAI	CASTG	1 cut(s)	141
TseI	GCWGC	1 cut(s)	46
TspDTI	ATGAA	4 cut(s)	17, 258, 326, 335
TspRI	CASTG	1 cut(s)	141
XcmI	CCANNNNNNNNNTGG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.