Rroxscaffold_5G00343370

Coiled-coil domain-containing protein 94 homolog

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
12827676 .. 12828017
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00343370.1

Sequence Viewer

Length: 255 bp
ATGAAATCTTTGGAAAACAGAACCTTGGATTCAAAATGGGAGATTGATATCCTTGCCACTTTGGAAGAGATGAAGTCTATGAAGATTAGCAGGTTGCATGTTGAGGAAATCGGTGACTTAAGAAAGTTGCTCCTGGGAGAGCCAAGTCATGGGAAGGCTTCGAAGAGGAAGCCAATTGGAAATTCAGAGATCTTAAAGCTTCGTAAGATGTTGAAAGATGAGGCACATCGAAGGAGAAACTTGAAGGAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.85

Weight (kDa)

9.92

Isoelectric Point (pI)

55.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 81
AccB7I CCANNNNNTGG 1 cut(s) 149
AcsI RAATTY 1 cut(s) 181
AfiI CCNNNNNNNGG 1 cut(s) 149
AflII CTTAAG 1 cut(s) 118
AgsI TTSAA 3 cut(s) 33, 214, 244
AjnI CCWGG 1 cut(s) 132
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
ApoI RAATTY 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 125
AsuII TTCGAA 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 134
BfrI CTTAAG 1 cut(s) 118
BfuAI ACCTGC 1 cut(s) 81
BglII AGATCT 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 134
BmrFI CCNGG 1 cut(s) 134
Bpu14I TTCGAA 1 cut(s) 161
BsaBI GATNNNNATC 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 24, 133
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse8I GATNNNNATC 1 cut(s) 47
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 2 cut(s) 24, 133
BseJI GATNNNNATC 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 149
Bsp119I TTCGAA 1 cut(s) 161
Bsp143I GATC 1 cut(s) 189
BspMI ACCTGC 1 cut(s) 81
BspT104I TTCGAA 1 cut(s) 161
BspTI CTTAAG 1 cut(s) 118
BssECI CCNNGG 2 cut(s) 24, 133
BssMI GATC 1 cut(s) 189
BssT1I CCWWGG 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 134
Bst6I CTCTTC 2 cut(s) 60, 158
BstAFI CTTAAG 1 cut(s) 118
BstBI TTCGAA 1 cut(s) 161
BstKTI GATC 1 cut(s) 192
BstMBI GATC 1 cut(s) 189
BstNI CCWGG 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
BveI ACCTGC 1 cut(s) 81
CviAII CATG 2 cut(s) 98, 149
CviJI RGCY 4 cut(s) 142, 158, 172, 199
CviKI_1 RGCY 4 cut(s) 142, 158, 172, 199
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
Eam1104I CTCTTC 2 cut(s) 60, 158
EarI CTCTTC 2 cut(s) 60, 158
Eco130I CCWWGG 1 cut(s) 24
Eco32I GATATC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 132
EcoRV GATATC 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 2 cut(s) 101, 152
FaiI YATR 3 cut(s) 80, 99, 150
FatI CATG 2 cut(s) 97, 148
Hin1II CATG 2 cut(s) 101, 152
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 1 cut(s) 29
HphI GGTGA 1 cut(s) 125
Hpy188I TCNGA 1 cut(s) 187
HpyAV CCTTC 3 cut(s) 148, 225, 238
HpyCH4V TGCA 1 cut(s) 97
Hsp92II CATG 2 cut(s) 101, 152
Kzo9I GATC 1 cut(s) 189
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 3 cut(s) 76, 119, 146
MaeIII GTNAC 1 cut(s) 113
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 3 cut(s) 77, 94, 175
MfeI CAATTG 1 cut(s) 174
MflI RGATCY 1 cut(s) 189
MluCI AATT 2 cut(s) 174, 181
MnlI CCTC 3 cut(s) 97, 159, 214
MseI TTAA 2 cut(s) 119, 194
MspCI CTTAAG 1 cut(s) 118
MspR9I CCNGG 1 cut(s) 134
MunI CAATTG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 134
NdeII GATC 1 cut(s) 189
NlaIII CATG 2 cut(s) 101, 152
NmuCI GTSAC 1 cut(s) 113
NspI RCATGY 1 cut(s) 101
NspV TTCGAA 1 cut(s) 161
PfeI GAWTC 1 cut(s) 29
PflMI CCANNNNNTGG 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PsuI RGATCY 1 cut(s) 189
SaqAI TTAA 2 cut(s) 119, 194
Sau3AI GATC 1 cut(s) 189
ScrFI CCNGG 1 cut(s) 134
SetI ASST 3 cut(s) 26, 95, 201
SfuI TTCGAA 1 cut(s) 161
SgeI CNNG 8 cut(s) 37, 65, 103, 110, 145, 146, 156, 161
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 2 cut(s) 174, 181
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 24
TaqI TCGA 2 cut(s) 161, 229
TasI AATT 2 cut(s) 174, 181
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 2 cut(s) 119, 194
Tru9I TTAA 2 cut(s) 119, 194
TseFI GTSAC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 3 cut(s) 17, 86, 95
Van91I CCANNNNNTGG 1 cut(s) 149
Vha464I CTTAAG 1 cut(s) 118
XapI RAATTY 1 cut(s) 181
XceI RCATGY 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.