Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013743

Physical Location & Seq

Genomic Coordinates Reverse (-)

51959406 .. 51960082

Gene Structure 677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003714

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTGGGTACATATGAGATGTGGTGATTTTAATTACATGCTTCATGGAGTTATAGACATATTAATCAGTTGGAGAAGGACAAAGATGTTGTTGCTCAGGCACAAGCAATTGCAATGCTTGAGTCCTTACCTCAGCTTCCATTTTGTGTTGTTGCTGCTCTGCATAACTTTCGTATTGACTCCAAGGCCTTCTCAAGAGTTCGAATTGAGGCAGCCTTTGGATTGGCTAATACATCATCTGAGGTACCACAATTCGGTTATAGGAGCTTTGCAGAGCGTCAATGCCGTGTTTAGGGCATCCGTGGCGTTGCTTCAGAATCGGGCTGATGTGGTTTTTGATCCCAGATTGGTCAAGAATAATTATGGTGGGAAAGTTGGTTTATTTGAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0010119 GO:0012505 GO:0016020 GO:0023052 GO:0031410 GO:0031982 GO:0031984 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

131

Amino Acids

15.25

Weight (kDa)

9.5

Isoelectric Point (pI)

56.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013743)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g06500
rosa_chinensis	RchiOBHm_Chr7g0200961 RchiOBHm_Chr7g0200971
rosa_laevigata	RLG00000003702 RLG00000003712 RLG00000003714
rosa_roxburghii	Rroxscaffold_1G00030570 Rroxscaffold_3G00255750 Rroxscaffold_3G00255780 Rroxscaffold_5G00343370
rosa_rugosa	Rorug07G0061000 Rorug07G0061100.1
rosa_samantha	Rh2DG073300 Rh4BG090400 Rh4DG118400 Rh7CG196700 Rh7CG197400 Rh7CG197500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	243
AccB1I	GGYRCC	1 cut(s)	243
AclWI	GGATC	1 cut(s)	332
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	2 cut(s)	9, 245
AfiI	CCNNNNNNNGG	2 cut(s)	253, 291
AluBI	AGCT	2 cut(s)	135, 266
AluI	AGCT	2 cut(s)	135, 266
AlwI	GGATC	1 cut(s)	332
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	2 cut(s)	154, 211
AseI	ATTAAT	1 cut(s)	62
Asp718I	GGTACC	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	35
AsuII	TTCGAA	1 cut(s)	201
BanI	GGYRCC	1 cut(s)	243
BbvCI	CCTCAGC	1 cut(s)	131
BbvI	GCAGC	2 cut(s)	141, 223
BceAI	ACGGC	1 cut(s)	269
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BisI	GCNGC	2 cut(s)	155, 212
BlsI	GCNGC	2 cut(s)	156, 213
BmiI	GGNNCC	1 cut(s)	245
BmsI	GCATC	1 cut(s)	305
Bpu10I	CCTNAGC	2 cut(s)	95, 131
Bpu14I	TTCGAA	1 cut(s)	201
BpuEI	CTTGAG	2 cut(s)	139, 177
BsaJI	CCNNGG	2 cut(s)	182, 300
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 291
Bse3DI	GCAATG	1 cut(s)	119
BseDI	CCNNGG	2 cut(s)	182, 300
BseGI	GGATG	1 cut(s)	296
BseLI	CCNNNNNNNGG	2 cut(s)	253, 291
BseMI	GCAATG	1 cut(s)	119
BseMII	CTCAG	3 cut(s)	109, 145, 230
BseXI	GCAGC	2 cut(s)	141, 223
BshFI	GGCC	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	243
BslI	CCNNNNNNNGG	2 cut(s)	253, 291
BsnI	GGCC	1 cut(s)	187
Bsp119I	TTCGAA	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	337
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	3 cut(s)	108, 144, 231
BspLI	GGNNCC	1 cut(s)	245
BspPI	GGATC	1 cut(s)	332
BspT104I	TTCGAA	1 cut(s)	201
BspT107I	GGYRCC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	119
BssECI	CCNNGG	2 cut(s)	182, 300
BssMI	GATC	1 cut(s)	337
BssT1I	CCWWGG	1 cut(s)	182
BstBI	TTCGAA	1 cut(s)	201
BstDEI	CTNAG	3 cut(s)	95, 131, 239
BstDSI	CCRYGG	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	296
BstKTI	GATC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNSI	RCATGY	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	141, 223
BsuRI	GGCC	1 cut(s)	187
BtgI	CCRYGG	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	296
CseI	GACGC	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	8, 244
CviAII	CATG	2 cut(s)	37, 44
CviJI	RGCY	6 cut(s)	135, 187, 214, 226, 266, 323
CviKI_1	RGCY	6 cut(s)	135, 187, 214, 226, 266, 323
CviQI	GTAC	2 cut(s)	8, 244
DdeI	CTNAG	3 cut(s)	95, 131, 239
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
Eco130I	CCWWGG	1 cut(s)	182
Eco147I	AGGCCT	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	182
FaeI	CATG	2 cut(s)	40, 47
FaiI	YATR	9 cut(s)	12, 14, 38, 45, 53, 59, 164, 260, 363
FatI	CATG	2 cut(s)	36, 43
FauNDI	CATATG	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	155, 212
FokI	GGATG	1 cut(s)	283
Fsp4HI	GCNGC	2 cut(s)	155, 212
GluI	GCNGC	2 cut(s)	155, 212
HaeIII	GGCC	1 cut(s)	187
HgaI	GACGC	1 cut(s)	265
Hin1II	CATG	2 cut(s)	40, 47
HinfI	GANTC	3 cut(s)	121, 178, 316
HphI	GGTGA	1 cut(s)	35
Hpy188I	TCNGA	2 cut(s)	240, 315
Hpy188III	TCNNGA	2 cut(s)	194, 352
HpyAV	CCTTC	2 cut(s)	69, 198
HpyCH4V	TGCA	3 cut(s)	112, 162, 271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	3 cut(s)	95, 131, 239
Hsp92II	CATG	2 cut(s)	40, 47
KpnI	GGTACC	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	337
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	2 cut(s)	82, 355
Lsp1109I	GCAGC	2 cut(s)	141, 223
LweI	GCATC	1 cut(s)	305
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MfeI	CAATTG	1 cut(s)	107
MluCI	AATT	5 cut(s)	31, 107, 203, 250, 358
MlyI	GAGTC	2 cut(s)	130, 172
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	3 cut(s)	140, 201, 234
MseI	TTAA	2 cut(s)	30, 62
MunI	CAATTG	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	302
NdeI	CATATG	1 cut(s)	12
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	2 cut(s)	40, 47
NlaIV	GGNNCC	1 cut(s)	245
NspI	RCATGY	1 cut(s)	40
NspV	TTCGAA	1 cut(s)	201
PceI	AGGCCT	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	316
PkrI	GCNGC	2 cut(s)	156, 213
PleI	GAGTC	2 cut(s)	129, 172
PpsI	GAGTC	2 cut(s)	129, 172
PshBI	ATTAAT	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	245
RsaI	GTAC	2 cut(s)	9, 245
RsaNI	GTAC	2 cut(s)	8, 244
SaqAI	TTAA	2 cut(s)	30, 62
SatI	GCNGC	2 cut(s)	155, 212
Sau3AI	GATC	1 cut(s)	337
SchI	GAGTC	2 cut(s)	130, 172
SetI	ASST	4 cut(s)	132, 137, 245, 268
SfaNI	GCATC	1 cut(s)	305
SfuI	TTCGAA	1 cut(s)	201
SmlI	CTYRAG	2 cut(s)	118, 192
SmoI	CTYRAG	2 cut(s)	118, 192
Sse9I	AATT	5 cut(s)	31, 107, 203, 250, 358
SseBI	AGGCCT	1 cut(s)	187
StuI	AGGCCT	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	182
TaqI	TCGA	1 cut(s)	201
TasI	AATT	5 cut(s)	31, 107, 203, 250, 358
TfiI	GAWTC	1 cut(s)	316
Tru1I	TTAA	2 cut(s)	30, 62
Tru9I	TTAA	2 cut(s)	30, 62
TseI	GCWGC	2 cut(s)	154, 211
TspDTI	ATGAA	1 cut(s)	32
TspGWI	ACGGA	1 cut(s)	289
VspI	ATTAAT	1 cut(s)	62
XceI	RCATGY	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.