Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0013743

Physical Location & Seq

Genomic Coordinates Forward (+)

5648231 .. 5649016

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG073300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCTCTACATAACTTTCTTGTTGACTCCAAGGCCTTCTCAAGAGTTCGAATTGAGGCAGCCTTTGGATTGGCTAATACATCATCTGAGGTACCACAATTCGGTTATAGGAGCTTTGCAGAGCGTCAATGCCAATTTTAGGGCATCAGTGGCATTTTTTCAGAACGGGGCTGATGTGGTTTTTGATCCCAGATTGGTCAAGGAAGTGGATAAGGAGAAGCAGAAGAGGGAGTGTGAAAAAAATGGGAGATGCCATGAAATCTTTAGAGAACAGAACCTTGGATTCGAAAGAGAGATTGATATCCTTGTTGCTTTGGATGAGATGAAGTCCATGAAGGTAGATGCCTCAGTAGTTGTTACCAGGTGTCGAGATCATGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0010119 GO:0012505 GO:0016020 GO:0023052 GO:0031410 GO:0031982 GO:0031984 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

127

Amino Acids

14.91

Weight (kDa)

6.2

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013743)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g06500
rosa_chinensis	RchiOBHm_Chr7g0200961 RchiOBHm_Chr7g0200971
rosa_laevigata	RLG00000003702 RLG00000003712 RLG00000003714
rosa_roxburghii	Rroxscaffold_1G00030570 Rroxscaffold_3G00255750 Rroxscaffold_3G00255780 Rroxscaffold_5G00343370
rosa_rugosa	Rorug07G0061000 Rorug07G0061100.1
rosa_samantha	Rh2DG073300 Rh4BG090400 Rh4DG118400 Rh7CG196700 Rh7CG197400 Rh7CG197500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	90
AclWI	GGATC	1 cut(s)	179
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	100, 138
AjnI	CCWGG	1 cut(s)	359
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	1 cut(s)	58
Asp718I	GGTACC	1 cut(s)	90
AsuII	TTCGAA	2 cut(s)	48, 285
BanI	GGYRCC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	361
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
Bme1390I	CCNGG	1 cut(s)	361
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	361
BmsI	GCATC	3 cut(s)	152, 239, 331
Bpu14I	TTCGAA	2 cut(s)	48, 285
BpuEI	CTTGAG	1 cut(s)	24
BsaBI	GATNNNNATC	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	29, 277
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 138
Bse8I	GATNNNNATC	1 cut(s)	299
BseBI	CCWGG	1 cut(s)	361
BseDI	CCNNGG	2 cut(s)	29, 277
BseGI	GGATG	1 cut(s)	322
BseJI	GATNNNNATC	1 cut(s)	299
BseLI	CCNNNNNNNGG	2 cut(s)	100, 138
BseMII	CTCAG	2 cut(s)	77, 360
BseXI	GCAGC	1 cut(s)	70
BshFI	GGCC	1 cut(s)	34
BshNI	GGYRCC	1 cut(s)	90
BslI	CCNNNNNNNGG	2 cut(s)	100, 138
BsnI	GGCC	1 cut(s)	34
Bsp119I	TTCGAA	2 cut(s)	48, 285
Bsp143I	GATC	2 cut(s)	184, 370
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	2 cut(s)	78, 359
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	179
BspT104I	TTCGAA	2 cut(s)	48, 285
BspT107I	GGYRCC	1 cut(s)	90
BssECI	CCNNGG	2 cut(s)	29, 277
BssMI	GATC	2 cut(s)	184, 370
BssT1I	CCWWGG	2 cut(s)	29, 277
Bst2UI	CCWGG	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	218
BstBI	TTCGAA	2 cut(s)	48, 285
BstDEI	CTNAG	2 cut(s)	86, 346
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	2 cut(s)	187, 373
BstMBI	GATC	2 cut(s)	184, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	359
BstV1I	GCAGC	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	153
CciI	TCATGA	1 cut(s)	373
CseI	GACGC	1 cut(s)	112
CsiI	ACCWGGT	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	3 cut(s)	254, 331, 374
CviJI	RGCY	5 cut(s)	34, 61, 73, 113, 170
CviKI_1	RGCY	5 cut(s)	34, 61, 73, 113, 170
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	2 cut(s)	86, 346
DpnI	GATC	2 cut(s)	186, 372
DpnII	GATC	2 cut(s)	184, 370
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco130I	CCWWGG	2 cut(s)	29, 277
Eco147I	AGGCCT	1 cut(s)	34
Eco32I	GATATC	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	359
EcoRV	GATATC	1 cut(s)	301
EcoT14I	CCWWGG	2 cut(s)	29, 277
ErhI	CCWWGG	2 cut(s)	29, 277
FaeI	CATG	3 cut(s)	257, 334, 377
FaiI	YATR	5 cut(s)	11, 107, 255, 332, 375
FatI	CATG	3 cut(s)	253, 330, 373
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	34
HgaI	GACGC	1 cut(s)	112
Hin1II	CATG	3 cut(s)	257, 334, 377
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HinfI	GANTC	2 cut(s)	25, 282
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	2 cut(s)	87, 162
Hpy188III	TCNNGA	3 cut(s)	41, 368, 374
Hpy8I	GTNNAC	1 cut(s)	24
HpyAV	CCTTC	2 cut(s)	45, 328
HpyCH4V	TGCA	1 cut(s)	118
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	2 cut(s)	86, 346
Hsp92II	CATG	3 cut(s)	257, 334, 377
KpnI	GGTACC	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	184, 370
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	3 cut(s)	202, 346, 373
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	3 cut(s)	152, 239, 331
MabI	ACCWGGT	1 cut(s)	359
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	2 cut(s)	186, 372
MboI	GATC	2 cut(s)	184, 370
MboII	GAAGA	1 cut(s)	235
MluCI	AATT	3 cut(s)	50, 97, 133
MlyI	GAGTC	1 cut(s)	19
MnlI	CCTC	4 cut(s)	48, 81, 219, 355
MspR9I	CCNGG	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	361
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	2 cut(s)	184, 370
NlaIII	CATG	3 cut(s)	257, 334, 377
NlaIV	GGNNCC	1 cut(s)	92
NspV	TTCGAA	2 cut(s)	48, 285
PagI	TCATGA	1 cut(s)	373
PceI	AGGCCT	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	282
PkrI	GCNGC	1 cut(s)	60
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	359
PspN4I	GGNNCC	1 cut(s)	92
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	2 cut(s)	184, 370
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	361
SetI	ASST	5 cut(s)	92, 115, 279, 339, 365
SexAI	ACCWGGT	1 cut(s)	359
SfaNI	GCATC	3 cut(s)	152, 239, 331
SfuI	TTCGAA	2 cut(s)	48, 285
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	3 cut(s)	50, 97, 133
SseBI	AGGCCT	1 cut(s)	34
StuI	AGGCCT	1 cut(s)	34
StyD4I	CCNGG	1 cut(s)	359
StyI	CCWWGG	2 cut(s)	29, 277
TaqI	TCGA	3 cut(s)	48, 285, 367
TasI	AATT	3 cut(s)	50, 97, 133
TfiI	GAWTC	1 cut(s)	282
TscAI	CASTG	1 cut(s)	153
TseI	GCWGC	1 cut(s)	58
TspDTI	ATGAA	3 cut(s)	270, 338, 347
TspRI	CASTG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.