Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013743

Physical Location & Seq

Genomic Coordinates Reverse (-)

51913698 .. 51919192

Gene Structure 5495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003712

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGTCGAGGTTGACAGCTCGGAGGTGGCTCGACTAATGAAGTGTTGCCGTGAAGGGGAGAAGAAGGTTACCACTTACCTAGTGGAGGAGATTAAGATGTGGGTACATATGAGATGTGGTGATTTTAATTACATGCTTCATGGAGTTATAGACATATTAATCAGTTGGAGAAGGACAAAGATGTTGTTGCTCAAGCACAAGCAATTGCAATGCTTGAATCCTTACCTTAGCTTCCATTTTCTGTTGTTAATGCTCTGCATCATTGACTCCAAGGGCTTCTGGAGAGTTCAAATTGAGGCAGCCTTTGGATTGGCTAATACATCATCTGAGGTACACAATTCGGTTGAAGGAGCTTTGCAGAGCGTCAATGGCATGTTTAGGGCATCCGCGGCGTTGCTTCAGAACCTGGCTGATGTGGTTTTTGATCCTAGATTGGTCAAGGGAGAGACAAGTCTTGGGAAGGCTTTTGAAGAGGAAGCCAGTAATCTTAAGAGTCAACTGACTCAATGGAAGAGGTTAGAGGCAGCTGGAAATTCAGAGATCTTAAAGCTTCGTAAGATGCTGAAAGATGAGGCACATCAGAAGGAGAAACTTGAAGGAGAAATAGCAACACTTCACAGTCAGTTGTTGCGACTGAGCTTTGATGCTGATGAGACAAGTAGACAACTTTATAGAAGTGGGCCTGGAAAAGTTGGTGACCTTGACTCCCTCATGACTCAAGTTAGGCATCTACAGCTCAAGGATTCAGAAAATGAGGACATAGCCTCAATAGCAAAAATCTTCGAACAAGGGGGATTGCATAAGATCTTGTCATTACCTAAAGCCGAAGACAATGATGTGCAAATTCATGCCGCCGTTGTAGCAAATCTTGCTGCTGAAGAAGCAAATGAGGAGAAAATTGTAGAAGCTGGCCGTCTCACATCCTTGTTGACTCAAAACCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

315

Amino Acids

35.35

Weight (kDa)

5.97

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013743)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g06500
rosa_chinensis	RchiOBHm_Chr7g0200961 RchiOBHm_Chr7g0200971
rosa_laevigata	RLG00000003702 RLG00000003712 RLG00000003714
rosa_roxburghii	Rroxscaffold_1G00030570 Rroxscaffold_3G00255750 Rroxscaffold_3G00255780 Rroxscaffold_5G00343370
rosa_rugosa	Rorug07G0061000 Rorug07G0061100.1
rosa_samantha	Rh2DG073300 Rh4BG090400 Rh4DG118400 Rh7CG196700 Rh7CG197400 Rh7CG197500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	661
AccII	CGCG	1 cut(s)	389
AciI	CCGC	3 cut(s)	387, 389, 852
AclWI	GGATC	1 cut(s)	419
AcoI	YGGCCR	1 cut(s)	910
AcsI	RAATTY	2 cut(s)	532, 843
AcuI	CTGAAG	2 cut(s)	383, 897
AfaI	GTAC	2 cut(s)	105, 333
AfiI	CCNNNNNNNGG	2 cut(s)	55, 85
AflII	CTTAAG	1 cut(s)	488
AgsI	TTSAA	5 cut(s)	217, 290, 347, 470, 596
AjnI	CCWGG	2 cut(s)	405, 682
AluBI	AGCT	8 cut(s)	18, 231, 353, 527, 550, 639, 736, 908
AluI	AGCT	8 cut(s)	18, 231, 353, 527, 550, 639, 736, 908
Alw26I	GTCTC	3 cut(s)	440, 647, 920
AlwI	GGATC	1 cut(s)	419
AlwNI	CAGNNNCTG	1 cut(s)	406
AoxI	GGCC	2 cut(s)	680, 910
ApeKI	GCWGC	3 cut(s)	299, 524, 872
ApoI	RAATTY	2 cut(s)	532, 843
AseI	ATTAAT	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	680
AsuHPI	GGTGA	2 cut(s)	131, 707
AsuII	TTCGAA	1 cut(s)	783
BbsI	GAAGAC	1 cut(s)	834
BbvI	GCAGC	3 cut(s)	311, 536, 859
BceAI	ACGGC	3 cut(s)	33, 839, 897
BciT130I	CCWGG	2 cut(s)	407, 684
BcoDI	GTCTC	3 cut(s)	440, 647, 920
BfaI	CTAG	2 cut(s)	80, 429
BfmI	CTRYAG	1 cut(s)	731
BfrI	CTTAAG	1 cut(s)	488
BglII	AGATCT	2 cut(s)	540, 804
BisI	GCNGC	5 cut(s)	300, 390, 525, 852, 873
BlsI	GCNGC	5 cut(s)	301, 391, 526, 853, 874
Bme1390I	CCNGG	2 cut(s)	407, 684
BmgT120I	GGNCC	1 cut(s)	680
BmrFI	CCNGG	2 cut(s)	407, 684
BmsI	GCATC	5 cut(s)	267, 392, 549, 634, 736
BpiI	GAAGAC	1 cut(s)	834
BpmI	CTGGAG	1 cut(s)	301
Bpu10I	CCTNAGC	1 cut(s)	227
Bpu14I	TTCGAA	1 cut(s)	783
BpuEI	CTTGAG	3 cut(s)	176, 702, 722
BsaJI	CCNNGG	2 cut(s)	270, 387
BsaXI	ACNNNNNCTCC	2 cut(s)	689, 719
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 85
Bse1I	ACTGG	1 cut(s)	480
Bse3DI	GCAATG	1 cut(s)	215
BseBI	CCWGG	2 cut(s)	407, 684
BseDI	CCNNGG	2 cut(s)	270, 387
BseGI	GGATG	2 cut(s)	383, 920
BseLI	CCNNNNNNNGG	2 cut(s)	55, 85
BseMI	GCAATG	1 cut(s)	215
BseMII	CTCAG	2 cut(s)	318, 626
BseNI	ACTGG	1 cut(s)	480
BseRI	GAGGAG	2 cut(s)	101, 905
BseXI	GCAGC	3 cut(s)	311, 536, 859
Bsh1236I	CGCG	1 cut(s)	389
BshFI	GGCC	2 cut(s)	682, 912
BslI	CCNNNNNNNGG	2 cut(s)	55, 85
BsmAI	GTCTC	3 cut(s)	440, 647, 920
BsmBI	CGTCTC	1 cut(s)	920
BsnI	GGCC	2 cut(s)	682, 912
Bsp119I	TTCGAA	1 cut(s)	783
Bsp143I	GATC	3 cut(s)	424, 540, 804
BspACI	CCGC	3 cut(s)	387, 389, 852
BspANI	GGCC	2 cut(s)	682, 912
BspCNI	CTCAG	2 cut(s)	319, 627
BspFNI	CGCG	1 cut(s)	389
BspHI	TCATGA	1 cut(s)	711
BspPI	GGATC	1 cut(s)	419
BspT104I	TTCGAA	1 cut(s)	783
BspTI	CTTAAG	1 cut(s)	488
BsrDI	GCAATG	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	480
BssECI	CCNNGG	2 cut(s)	270, 387
BssMI	GATC	3 cut(s)	424, 540, 804
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	2 cut(s)	407, 684
Bst4CI	ACNGT	1 cut(s)	620
Bst6I	CTCTTC	2 cut(s)	465, 506
BstAFI	CTTAAG	1 cut(s)	488
BstAPI	GCANNNNNTGC	1 cut(s)	869
BstBI	TTCGAA	1 cut(s)	783
BstC8I	GCNNGC	1 cut(s)	910
BstDEI	CTNAG	3 cut(s)	227, 327, 635
BstDSI	CCRYGG	1 cut(s)	387
BstEII	GGTNACC	2 cut(s)	67, 695
BstENI	CCTNNNNNAGG	1 cut(s)	83
BstF5I	GGATG	2 cut(s)	383, 920
BstFNI	CGCG	1 cut(s)	389
BstKTI	GATC	3 cut(s)	427, 543, 807
BstMAI	GTCTC	3 cut(s)	440, 647, 920
BstMBI	GATC	3 cut(s)	424, 540, 804
BstMWI	GCNNNNNNNGC	7 cut(s)	369, 389, 733, 770, 860, 869, 881
BstNI	CCWGG	2 cut(s)	407, 684
BstNSI	RCATGY	2 cut(s)	136, 376
BstPI	GGTNACC	2 cut(s)	67, 695
BstSCI	CCNGG	2 cut(s)	405, 682
BstSFI	CTRYAG	1 cut(s)	731
BstUI	CGCG	1 cut(s)	389
BstV1I	GCAGC	3 cut(s)	311, 536, 859
BstV2I	GAAGAC	1 cut(s)	834
BstX2I	RGATCY	2 cut(s)	540, 804
BstYI	RGATCY	2 cut(s)	540, 804
BsuRI	GGCC	2 cut(s)	682, 912
BtgI	CCRYGG	1 cut(s)	387
BtsCI	GGATG	2 cut(s)	383, 920
Cac8I	GCNNGC	1 cut(s)	910
CaiI	CAGNNNCTG	1 cut(s)	406
CciI	TCATGA	1 cut(s)	711
Cfr13I	GGNCC	1 cut(s)	680
Cfr42I	CCGCGG	1 cut(s)	390
CseI	GACGC	1 cut(s)	352
Csp6I	GTAC	2 cut(s)	104, 332
CviAII	CATG	5 cut(s)	133, 140, 373, 712, 848
CviQI	GTAC	2 cut(s)	104, 332
DdeI	CTNAG	3 cut(s)	227, 327, 635
DpnI	GATC	3 cut(s)	426, 542, 806
DpnII	GATC	3 cut(s)	424, 540, 804
EaeI	YGGCCR	1 cut(s)	910
Eam1104I	CTCTTC	2 cut(s)	465, 506
EarI	CTCTTC	2 cut(s)	465, 506
Eco130I	CCWWGG	1 cut(s)	270
Eco57I	CTGAAG	2 cut(s)	383, 897
Eco91I	GGTNACC	2 cut(s)	67, 695
EcoNI	CCTNNNNNAGG	1 cut(s)	83
EcoO65I	GGTNACC	2 cut(s)	67, 695
EcoRII	CCWGG	2 cut(s)	405, 682
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
Esp3I	CGTCTC	1 cut(s)	920
FaeI	CATG	5 cut(s)	136, 143, 376, 715, 851
FatI	CATG	5 cut(s)	132, 139, 372, 711, 847
FauNDI	CATATG	1 cut(s)	108
FblI	GTMKAC	1 cut(s)	661
Fnu4HI	GCNGC	5 cut(s)	300, 390, 525, 852, 873
FokI	GGATG	2 cut(s)	370, 907
Fsp4HI	GCNGC	5 cut(s)	300, 390, 525, 852, 873
FspBI	CTAG	2 cut(s)	80, 429
GluI	GCNGC	5 cut(s)	300, 390, 525, 852, 873
GsuI	CTGGAG	1 cut(s)	301
HaeIII	GGCC	2 cut(s)	682, 912
HgaI	GACGC	1 cut(s)	352
Hin1II	CATG	5 cut(s)	136, 143, 376, 715, 851
HincII	GTYRAC	3 cut(s)	13, 497, 930
HindII	GTYRAC	3 cut(s)	13, 497, 930
HindIII	AAGCTT	1 cut(s)	548
HinfI	GANTC	8 cut(s)	217, 266, 493, 502, 704, 715, 743, 931
HphI	GGTGA	2 cut(s)	131, 707
Hpy166II	GTNNAC	5 cut(s)	13, 334, 497, 662, 930
Hpy188I	TCNGA	7 cut(s)	22, 328, 402, 538, 582, 748, 944
Hpy188III	TCNNGA	2 cut(s)	280, 712
Hpy8I	GTNNAC	5 cut(s)	13, 334, 497, 662, 930
HpyAV	CCTTC	7 cut(s)	47, 58, 165, 341, 454, 577, 590
HpyCH4III	ACNGT	1 cut(s)	620
HpyCH4V	TGCA	5 cut(s)	208, 258, 358, 799, 841
HpyF10VI	GCNNNNNNNGC	7 cut(s)	369, 389, 733, 770, 860, 869, 881
HpyF3I	CTNAG	3 cut(s)	227, 327, 635
Hsp92II	CATG	5 cut(s)	136, 143, 376, 715, 851
KspI	CCGCGG	1 cut(s)	390
Kzo9I	GATC	3 cut(s)	424, 540, 804
LmnI	GCTCC	1 cut(s)	350
LpnPI	CCDG	8 cut(s)	265, 392, 419, 493, 513, 669, 696, 894
Lsp1109I	GCAGC	3 cut(s)	311, 536, 859
LweI	GCATC	5 cut(s)	267, 392, 549, 634, 736
MaeI	CTAG	2 cut(s)	80, 429
MaeIII	GTNAC	2 cut(s)	67, 695
MalI	GATC	3 cut(s)	426, 542, 806
MboI	GATC	3 cut(s)	424, 540, 804
MboII	GAAGA	6 cut(s)	73, 482, 523, 772, 839, 890
MfeI	CAATTG	1 cut(s)	203
MflI	RGATCY	2 cut(s)	540, 804
MluCI	AATT	7 cut(s)	127, 203, 291, 337, 532, 843, 897
MlyI	GAGTC	6 cut(s)	260, 496, 502, 698, 709, 925
MmeI	TCCRAC	1 cut(s)	146
MseI	TTAA	6 cut(s)	93, 126, 158, 248, 489, 545
MspA1I	CMGCKG	2 cut(s)	389, 527
MspCI	CTTAAG	1 cut(s)	488
MspR9I	CCNGG	2 cut(s)	407, 684
MunI	CAATTG	1 cut(s)	203
MvaI	CCWGG	2 cut(s)	407, 684
MvnI	CGCG	1 cut(s)	389
MwoI	GCNNNNNNNGC	7 cut(s)	369, 389, 733, 770, 860, 869, 881
NdeI	CATATG	1 cut(s)	108
NdeII	GATC	3 cut(s)	424, 540, 804
NlaIII	CATG	5 cut(s)	136, 143, 376, 715, 851
NmuCI	GTSAC	1 cut(s)	695
NspI	RCATGY	2 cut(s)	136, 376
NspV	TTCGAA	1 cut(s)	783
PagI	TCATGA	1 cut(s)	711
PfeI	GAWTC	2 cut(s)	217, 743
PkrI	GCNGC	5 cut(s)	301, 391, 526, 853, 874
PleI	GAGTC	6 cut(s)	260, 496, 501, 698, 709, 925
PpsI	GAGTC	6 cut(s)	260, 496, 501, 698, 709, 925
PshBI	ATTAAT	1 cut(s)	158
Psp6I	CCWGG	2 cut(s)	405, 682
PspEI	GGTNACC	2 cut(s)	67, 695
PspGI	CCWGG	2 cut(s)	405, 682
PspPI	GGNCC	1 cut(s)	680
PstNI	CAGNNNCTG	1 cut(s)	406
PsuI	RGATCY	2 cut(s)	540, 804
PvuII	CAGCTG	1 cut(s)	527
RsaI	GTAC	2 cut(s)	105, 333
RsaNI	GTAC	2 cut(s)	104, 332
SacII	CCGCGG	1 cut(s)	390
SaqAI	TTAA	6 cut(s)	93, 126, 158, 248, 489, 545
SatI	GCNGC	5 cut(s)	300, 390, 525, 852, 873
Sau3AI	GATC	3 cut(s)	424, 540, 804
Sau96I	GGNCC	1 cut(s)	680
SchI	GAGTC	6 cut(s)	260, 496, 502, 698, 709, 925
ScrFI	CCNGG	2 cut(s)	407, 684
SfaNI	GCATC	5 cut(s)	267, 392, 549, 634, 736
SfcI	CTRYAG	1 cut(s)	731
Sfr303I	CCGCGG	1 cut(s)	390
SfuI	TTCGAA	1 cut(s)	783
SgrBI	CCGCGG	1 cut(s)	390
SmlI	CTYRAG	4 cut(s)	191, 488, 717, 737
SmoI	CTYRAG	4 cut(s)	191, 488, 717, 737
Sse9I	AATT	7 cut(s)	127, 203, 291, 337, 532, 843, 897
SsiI	CCGC	3 cut(s)	387, 389, 852
SspMI	CTAG	2 cut(s)	80, 429
StyD4I	CCNGG	2 cut(s)	405, 682
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	620
TaqI	TCGA	3 cut(s)	6, 31, 783
TasI	AATT	7 cut(s)	127, 203, 291, 337, 532, 843, 897
TauI	GCSGC	2 cut(s)	392, 854
TfiI	GAWTC	2 cut(s)	217, 743
Tru1I	TTAA	6 cut(s)	93, 126, 158, 248, 489, 545
Tru9I	TTAA	6 cut(s)	93, 126, 158, 248, 489, 545
TseFI	GTSAC	1 cut(s)	695
TseI	GCWGC	3 cut(s)	299, 524, 872
Tsp45I	GTSAC	1 cut(s)	695
TspDTI	ATGAA	3 cut(s)	53, 128, 836
Vha464I	CTTAAG	1 cut(s)	488
VspI	ATTAAT	1 cut(s)	158
XagI	CCTNNNNNAGG	1 cut(s)	83
XapI	RAATTY	2 cut(s)	532, 843
XceI	RCATGY	2 cut(s)	136, 376
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	661
XspI	CTAG	2 cut(s)	80, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.