Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0013743

Physical Location & Seq

Genomic Coordinates Forward (+)

17365569 .. 17367525

Gene Structure 1957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG196700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTTGTTGCTCAGGCACAAGCAATTGCAATGCTTGAGTCCTTACCTCAGCTTCCATTTTGTGTTGTTAATGCTCTGCATAACTTTCTTACTGACTCCAAGGCCTTCTCAAGAGTTTGAATTGAGGCAGCCTTTGGATTGGCTAATACATCATCTGAGGTACCATAATTCGGTTATAAGAGCTTTGCAGAGCGTCAATGCCGTGTTTAGGGCATCCGTGGCATTGCTTCAGAACCGGGCTGATGTGGTTTTTGACCCCAGATTGGTCAAGGGAGAGACAAGTCTTAGGAAGGCTGCTAAAGAGGAAGCCAGTAATCTTAAGAGTCAACTGATTCTATGGAAAAGGTCAGAGGCAGCTGGAAATTCAGAGATCTTAAAGCTTCGTAAGATGCTGAAAGATGAGGCACATCAGAAGGTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

140

Amino Acids

16.28

Weight (kDa)

9.88

Isoelectric Point (pI)

61.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013743)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g06500
rosa_chinensis	RchiOBHm_Chr7g0200961 RchiOBHm_Chr7g0200971
rosa_laevigata	RLG00000003702 RLG00000003712 RLG00000003714
rosa_roxburghii	Rroxscaffold_1G00030570 Rroxscaffold_3G00255750 Rroxscaffold_3G00255780 Rroxscaffold_5G00343370
rosa_rugosa	Rorug07G0061000 Rorug07G0061100.1
rosa_samantha	Rh2DG073300 Rh4BG090400 Rh4DG118400 Rh7CG196700 Rh7CG197400 Rh7CG197500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	176
Acc65I	GGTACC	1 cut(s)	159
AccB1I	GGYRCC	1 cut(s)	159
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	212
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	3 cut(s)	169, 207, 262
AflII	CTTAAG	1 cut(s)	317
AgsI	TTSAA	1 cut(s)	119
AluBI	AGCT	4 cut(s)	51, 182, 356, 379
AluI	AGCT	4 cut(s)	51, 182, 356, 379
Alw26I	GTCTC	1 cut(s)	269
AoxI	GGCC	1 cut(s)	101
ApeKI	GCWGC	3 cut(s)	127, 293, 353
ApoI	RAATTY	1 cut(s)	361
Asp718I	GGTACC	1 cut(s)	159
AsuC2I	CCSGG	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	159
BbvCI	CCTCAGC	1 cut(s)	47
BbvI	GCAGC	3 cut(s)	139, 280, 365
BceAI	ACGGC	1 cut(s)	185
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	269
BfrI	CTTAAG	1 cut(s)	317
BglII	AGATCT	1 cut(s)	369
BisI	GCNGC	3 cut(s)	128, 294, 354
BlsI	GCNGC	3 cut(s)	129, 295, 355
Bme1390I	CCNGG	1 cut(s)	236
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	2 cut(s)	221, 378
Bpu10I	CCTNAGC	2 cut(s)	11, 47
BpuEI	CTTGAG	2 cut(s)	55, 93
BpuMI	CCSGG	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	98, 216
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 207, 262
Bse1I	ACTGG	1 cut(s)	309
Bse3DI	GCAATG	2 cut(s)	35, 221
BseDI	CCNNGG	2 cut(s)	98, 216
BseGI	GGATG	1 cut(s)	212
BseLI	CCNNNNNNNGG	3 cut(s)	169, 207, 262
BseMI	GCAATG	2 cut(s)	35, 221
BseMII	CTCAG	3 cut(s)	25, 61, 146
BseNI	ACTGG	1 cut(s)	309
BseXI	GCAGC	3 cut(s)	139, 280, 365
BshFI	GGCC	1 cut(s)	103
BshNI	GGYRCC	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	235
BslI	CCNNNNNNNGG	3 cut(s)	169, 207, 262
BsmAI	GTCTC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	369
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	3 cut(s)	24, 60, 147
BspLI	GGNNCC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	159
BspTI	CTTAAG	1 cut(s)	317
BsrDI	GCAATG	2 cut(s)	35, 221
BsrI	ACTGG	1 cut(s)	309
BssECI	CCNNGG	2 cut(s)	98, 216
BssMI	GATC	1 cut(s)	369
BssT1I	CCWWGG	1 cut(s)	98
BstAFI	CTTAAG	1 cut(s)	317
BstDEI	CTNAG	4 cut(s)	11, 47, 155, 284
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	212
BstKTI	GATC	1 cut(s)	372
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	369
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	234
BstV1I	GCAGC	3 cut(s)	139, 280, 365
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	103
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	212
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	160
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	4 cut(s)	11, 47, 155, 284
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	98
Eco147I	AGGCCT	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	98
FaiI	YATR	4 cut(s)	80, 165, 176, 337
Fnu4HI	GCNGC	3 cut(s)	128, 294, 354
FokI	GGATG	1 cut(s)	199
Fsp4HI	GCNGC	3 cut(s)	128, 294, 354
GluI	GCNGC	3 cut(s)	128, 294, 354
HaeIII	GGCC	1 cut(s)	103
HapII	CCGG	1 cut(s)	235
HgaI	GACGC	1 cut(s)	181
HincII	GTYRAC	1 cut(s)	326
HindII	GTYRAC	1 cut(s)	326
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	4 cut(s)	37, 94, 322, 331
HpaII	CCGG	1 cut(s)	235
Hpy166II	GTNNAC	1 cut(s)	326
Hpy188I	TCNGA	5 cut(s)	156, 231, 349, 367, 411
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	1 cut(s)	326
HpyAV	CCTTC	3 cut(s)	114, 283, 406
HpyCH4V	TGCA	3 cut(s)	28, 78, 187
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	4 cut(s)	11, 47, 155, 284
KpnI	GGTACC	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	369
LpnPI	CCDG	4 cut(s)	248, 271, 322, 342
Lsp1109I	GCAGC	3 cut(s)	139, 280, 365
LweI	GCATC	2 cut(s)	221, 378
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MfeI	CAATTG	1 cut(s)	23
MflI	RGATCY	1 cut(s)	369
MluCI	AATT	4 cut(s)	23, 119, 166, 361
MlyI	GAGTC	3 cut(s)	46, 88, 331
MnlI	CCTC	6 cut(s)	56, 117, 150, 295, 343, 394
MseI	TTAA	3 cut(s)	68, 318, 374
MspA1I	CMGCKG	1 cut(s)	356
MspCI	CTTAAG	1 cut(s)	317
MspI	CCGG	1 cut(s)	235
MspR9I	CCNGG	1 cut(s)	236
MunI	CAATTG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	218
NciI	CCSGG	1 cut(s)	236
NdeII	GATC	1 cut(s)	369
NlaIV	GGNNCC	1 cut(s)	161
PceI	AGGCCT	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	331
PkrI	GCNGC	3 cut(s)	129, 295, 355
PleI	GAGTC	3 cut(s)	45, 88, 330
PpsI	GAGTC	3 cut(s)	45, 88, 330
PsiI	TTATAA	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	369
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SaqAI	TTAA	3 cut(s)	68, 318, 374
SatI	GCNGC	3 cut(s)	128, 294, 354
Sau3AI	GATC	1 cut(s)	369
SchI	GAGTC	3 cut(s)	46, 88, 331
ScrFI	CCNGG	1 cut(s)	236
SetI	ASST	8 cut(s)	48, 53, 161, 184, 347, 358, 381, 417
SfaNI	GCATC	2 cut(s)	221, 378
SmlI	CTYRAG	3 cut(s)	34, 108, 317
SmoI	CTYRAG	3 cut(s)	34, 108, 317
Sse9I	AATT	4 cut(s)	23, 119, 166, 361
SseBI	AGGCCT	1 cut(s)	103
StuI	AGGCCT	1 cut(s)	103
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	98
TasI	AATT	4 cut(s)	23, 119, 166, 361
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	3 cut(s)	68, 318, 374
Tru9I	TTAA	3 cut(s)	68, 318, 374
TseI	GCWGC	3 cut(s)	127, 293, 353
TspGWI	ACGGA	1 cut(s)	205
Vha464I	CTTAAG	1 cut(s)	317
XapI	RAATTY	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.