Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010573

Physical Location & Seq

Genomic Coordinates Reverse (-)

18967293 .. 18968769

Gene Structure 1477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001669

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTCAAGTTCAGTCGTGAGAGAGAGGCAATATATTTGTAGCTGCGCATATCAAGATTTCGAAGCCAACCCTGACCTCCTAGGCGAGTTGCCCTACAACCCTCCGGACCTGGTTCCAATCGTGTTCAAGCTCTGGAAGACGGTCCAAAGCGGTTTGATTGATGATGAAGATGATGAGGAGCCACCAAGTTTGGAATCGGAAGAATATAGGCTCCTTCATGTAGAAGTGATCAGGGACGTTGGTCTGTCGCGTCTCAAGCTATCATCTCCAAGATCTAGAAGTGAACTCAAAGAGCGCTTCATTCATATTCTTTCCACAAAACTCCATGTCCCAGAAGAAGAGCATCAAACTATCATTGACCAGATCTTTCAAGAGGTTGATAAGGATTGCCGCCGTTTTCCCCTCCGCCCATTGCGGCCCCTTAAAGTGGCTGTAGACATTGTGACTGTGCGGTTGCGATTGCGCCCTCCTCCTCCTCCTCCTCCACCTCCTCCGGTTGATTTTGATGTTTTCCGTCAGATGCTAGACTCAGACGACGGCAACGAATTGTTATCCTTGATTACTGATTATGAGGAGGAGGGGGACAGCAGCCCTTCAAGGTTTGTAGGGTTTAACCATAGCCAAGTTAATGTTCAAGGCCCCTTCACCACATCAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

25.12

Weight (kDa)

4.73

Isoelectric Point (pI)

68.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010573)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32280
rosa_laevigata	RLG00000001669 RLG00000001674 RLG00000031849
rosa_multiflora	Rmu_co8422033.1_g000001 Rmu_sc0000356.1_g000014
rosa_roxburghii	Rroxscaffold_3G00232350 Rroxscaffold_3G00232370
rosa_rugosa	Rorug04G0458100
rosa_samantha	Rh5AG089800 Rh5BG085300 Rh5CG099200 Rh5DG085100 Rh6AG105400 Rh7AG389100 Rh7AG389300 Rh7BG374900 Rh7BG375200 Rh7CG408400 Rh7DG387100
rosa_wichuraiana	Rw7G032630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	46
AccI	GTMKAC	1 cut(s)	435
AccII	CGCG	1 cut(s)	250
AccIII	TCCGGA	1 cut(s)	103
AciI	CCGC	5 cut(s)	150, 391, 406, 415, 451
AfeI	AGCGCT	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	4 cut(s)	127, 371, 597, 635
AjnI	CCWGG	1 cut(s)	108
AjuI	GAANNNNNNNTTGG	2 cut(s)	615, 647
AluBI	AGCT	4 cut(s)	42, 130, 259, 657
AluI	AGCT	4 cut(s)	42, 130, 259, 657
Alw26I	GTCTC	1 cut(s)	257
Aor13HI	TCCGGA	1 cut(s)	103
Aor51HI	AGCGCT	1 cut(s)	296
AoxI	GGCC	2 cut(s)	416, 637
ApeKI	GCWGC	2 cut(s)	42, 588
AspA2I	CCTAGG	1 cut(s)	79
AspLEI	GCGC	3 cut(s)	47, 297, 465
AspS9I	GGNCC	4 cut(s)	106, 142, 417, 638
AsuHPI	GGTGA	1 cut(s)	637
AsuII	TTCGAA	1 cut(s)	60
AvaII	GGWCC	2 cut(s)	106, 142
AvrII	CCTAGG	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	29, 600
BceAI	ACGGC	2 cut(s)	378, 553
BciT130I	CCWGG	1 cut(s)	110
BclI	TGATCA	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	4 cut(s)	80, 276, 524, 658
BfmI	CTRYAG	1 cut(s)	432
BfoI	RGCGCY	1 cut(s)	298
BglII	AGATCT	2 cut(s)	272, 363
BisI	GCNGC	4 cut(s)	43, 391, 416, 589
BlnI	CCTAGG	1 cut(s)	79
BlsI	GCNGC	4 cut(s)	44, 392, 417, 590
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	2 cut(s)	106, 142
BmgT120I	GGNCC	4 cut(s)	106, 142, 417, 638
BmiI	GGNNCC	5 cut(s)	114, 180, 212, 419, 640
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	2 cut(s)	352, 510
BoxI	GACNNNNGTC	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	143
Bpu14I	TTCGAA	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	79
BsaWI	WCCGGW	2 cut(s)	103, 493
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse3DI	GCAATG	1 cut(s)	410
BseAI	TCCGGA	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMI	GCAATG	1 cut(s)	410
BseMII	CTCAG	1 cut(s)	543
BseRI	GAGGAG	9 cut(s)	191, 459, 462, 465, 468, 471, 480, 587, 590
BseXI	GCAGC	2 cut(s)	29, 600
Bsh1236I	CGCG	1 cut(s)	250
BshFI	GGCC	2 cut(s)	418, 639
BsiSI	CCGG	2 cut(s)	104, 494
BslFI	GGGAC	3 cut(s)	248, 314, 596
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	1 cut(s)	257
BsmBI	CGTCTC	1 cut(s)	257
BsmFI	GGGAC	3 cut(s)	248, 314, 596
BsnI	GGCC	2 cut(s)	418, 639
Bsp119I	TTCGAA	1 cut(s)	60
Bsp13I	TCCGGA	1 cut(s)	103
Bsp143I	GATC	3 cut(s)	228, 272, 363
BspACI	CCGC	5 cut(s)	150, 391, 406, 415, 451
BspANI	GGCC	2 cut(s)	418, 639
BspCNI	CTCAG	1 cut(s)	542
BspEI	TCCGGA	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	250
BspLI	GGNNCC	5 cut(s)	114, 180, 212, 419, 640
BspQI	GCTCTTC	1 cut(s)	333
BspT104I	TTCGAA	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	410
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	3 cut(s)	228, 272, 363
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	2 cut(s)	142, 448
Bst6I	CTCTTC	1 cut(s)	333
BstBI	TTCGAA	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	529
BstFNI	CGCG	1 cut(s)	250
BstH2I	RGCGCY	1 cut(s)	298
BstHHI	GCGC	3 cut(s)	47, 297, 465
BstKTI	GATC	3 cut(s)	231, 275, 366
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	3 cut(s)	228, 272, 363
BstMWI	GCNNNNNNNGC	1 cut(s)	256
BstNI	CCWGG	1 cut(s)	110
BstPAI	GACNNNNGTC	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	432
BstUI	CGCG	1 cut(s)	250
BstV1I	GCAGC	2 cut(s)	29, 600
BstV2I	GAAGAC	1 cut(s)	143
BstX2I	RGATCY	2 cut(s)	272, 363
BstYI	RGATCY	2 cut(s)	272, 363
BsuRI	GGCC	2 cut(s)	418, 639
CfoI	GCGC	3 cut(s)	47, 297, 465
Cfr13I	GGNCC	4 cut(s)	106, 142, 417, 638
CseI	GACGC	1 cut(s)	239
CsiI	ACCWGGT	1 cut(s)	108
CspCI	CAANNNNNGTGG	2 cut(s)	171, 206
CviAII	CATG	2 cut(s)	218, 326
DdeI	CTNAG	1 cut(s)	529
DpnI	GATC	3 cut(s)	230, 274, 365
DpnII	GATC	3 cut(s)	228, 272, 363
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
EciI	GGCGGA	1 cut(s)	395
Eco130I	CCWWGG	1 cut(s)	79
Eco47I	GGWCC	2 cut(s)	106, 142
Eco47III	AGCGCT	1 cut(s)	296
EcoO109I	RGGNCCY	1 cut(s)	638
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	79
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	2 cut(s)	221, 329
FaiI	YATR	8 cut(s)	33, 49, 207, 219, 306, 327, 570, 618
FaqI	GGGAC	3 cut(s)	248, 314, 596
FatI	CATG	2 cut(s)	217, 325
FbaI	TGATCA	1 cut(s)	228
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	4 cut(s)	43, 391, 416, 589
Fsp4HI	GCNGC	4 cut(s)	43, 391, 416, 589
FspBI	CTAG	4 cut(s)	80, 276, 524, 658
FspI	TGCGCA	1 cut(s)	46
GlaI	GCGC	3 cut(s)	46, 296, 464
GluI	GCNGC	4 cut(s)	43, 391, 416, 589
HaeII	RGCGCY	1 cut(s)	298
HaeIII	GGCC	2 cut(s)	418, 639
HapII	CCGG	2 cut(s)	104, 494
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	3 cut(s)	47, 297, 465
Hin1II	CATG	2 cut(s)	221, 329
Hin6I	GCGC	3 cut(s)	45, 295, 463
HinP1I	GCGC	3 cut(s)	45, 295, 463
HinfI	GANTC	2 cut(s)	194, 527
HpaII	CCGG	2 cut(s)	104, 494
HphI	GGTGA	1 cut(s)	637
Hpy166II	GTNNAC	2 cut(s)	284, 436
Hpy188I	TCNGA	3 cut(s)	199, 519, 532
Hpy188III	TCNNGA	6 cut(s)	16, 53, 104, 133, 276, 371
Hpy8I	GTNNAC	2 cut(s)	284, 436
Hpy99I	CGWCG	1 cut(s)	539
HpyAV	CCTTC	3 cut(s)	224, 603, 652
HpyCH4III	ACNGT	2 cut(s)	142, 448
HpyCH4IV	ACGT	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	256
HpyF3I	CTNAG	1 cut(s)	529
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	221, 329
HspAI	GCGC	3 cut(s)	45, 295, 463
Kpn2I	TCCGGA	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	228, 272, 363
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	2 cut(s)	178, 216
LpnPI	CCDG	9 cut(s)	84, 95, 117, 118, 122, 217, 345, 374, 507
Lsp1109I	GCAGC	2 cut(s)	29, 600
LweI	GCATC	2 cut(s)	352, 510
MabI	ACCWGGT	1 cut(s)	108
MaeI	CTAG	4 cut(s)	80, 276, 524, 658
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	3 cut(s)	230, 274, 365
MboI	GATC	3 cut(s)	228, 272, 363
MboII	GAAGA	5 cut(s)	148, 179, 212, 347, 350
MflI	RGATCY	2 cut(s)	272, 363
MluCI	AATT	1 cut(s)	545
MlyI	GAGTC	1 cut(s)	521
MroI	TCCGGA	1 cut(s)	103
MseI	TTAA	3 cut(s)	423, 612, 627
MspI	CCGG	2 cut(s)	104, 494
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	250
MwoI	GCNNNNNNNGC	1 cut(s)	256
NdeII	GATC	3 cut(s)	228, 272, 363
NlaIII	CATG	2 cut(s)	221, 329
NlaIV	GGNNCC	5 cut(s)	114, 180, 212, 419, 640
NmuCI	GTSAC	1 cut(s)	442
NsbI	TGCGCA	1 cut(s)	46
NspV	TTCGAA	1 cut(s)	60
PciSI	GCTCTTC	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	1 cut(s)	540
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	4 cut(s)	44, 392, 417, 590
PleI	GAGTC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	521
PshAI	GACNNNNGTC	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	5 cut(s)	114, 180, 212, 419, 640
PspPI	GGNCC	4 cut(s)	106, 142, 417, 638
PsuI	RGATCY	2 cut(s)	272, 363
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	3 cut(s)	423, 612, 627
SatI	GCNGC	4 cut(s)	43, 391, 416, 589
Sau3AI	GATC	3 cut(s)	228, 272, 363
Sau96I	GGNCC	4 cut(s)	106, 142, 417, 638
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	1 cut(s)	110
SexAI	ACCWGGT	1 cut(s)	108
SfaNI	GCATC	2 cut(s)	352, 510
SfcI	CTRYAG	1 cut(s)	432
SfuI	TTCGAA	1 cut(s)	60
SinI	GGWCC	2 cut(s)	106, 142
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	1 cut(s)	545
SsiI	CCGC	5 cut(s)	150, 391, 406, 415, 451
SspMI	CTAG	4 cut(s)	80, 276, 524, 658
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	2 cut(s)	142, 448
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	60
TasI	AATT	1 cut(s)	545
TauI	GCSGC	2 cut(s)	393, 418
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	3 cut(s)	423, 612, 627
Tru9I	TTAA	3 cut(s)	423, 612, 627
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	2 cut(s)	42, 588
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	4 cut(s)	180, 206, 289, 293
TspGWI	ACGGA	1 cut(s)	503
VpaK11BI	GGWCC	2 cut(s)	106, 142
XbaI	TCTAGA	1 cut(s)	275
XmaJI	CCTAGG	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	435
XspI	CTAG	4 cut(s)	80, 276, 524, 658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.