Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8422033.1

Orthogroup ID

OG0010573

Physical Location & Seq

Genomic Coordinates Reverse (-)

16 .. 1419

Gene Structure 1404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8422033.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

acggtccaaagaggtttgattgatgaagaagatgatgaggagccaccaagtttggaattggaagaatataggctccttcatgtagaagtgatcagagatgttgatctgttgcgtctcactctatcatctccaagatctagaaatgaactcaaagagcacttaattcatattctttccacaaaactccatgtcccaaaagaagagcatcaaactatcattgaccagatctttcaagaggttgataaggattgtcggcgttttcccctcggcccattgcagccccttaaagtggttgtagacaatgtgactgtgcggttgcgattgcaccctcctcctcctcctcctccggttgattttgatgtcatacttcagatgctagactcagacgaaggcaccgaattgttatccttgattactgattatgaggatgagggtttggagaaagtgggacctgatagcttggaagctaagaaacaagaatcatgtcctatttgtatggatgactttgaggaaaaggaggatgcaaccccaattgctcgcttgccctgcttacatgtttttcatagacattgcattcttggctggcttcacagaaaccccttatgtcccttgtgccgatgccctctgtgtaaaaagagaaagctagaggaaatattgtcatcttcaactccaattggtccctcatcaaatattccaaggcttagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

235

Amino Acids

26.94

Weight (kDa)

5.03

Isoelectric Point (pI)

62.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010573)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32280
rosa_laevigata	RLG00000001669 RLG00000001674 RLG00000031849
rosa_multiflora	Rmu_co8422033.1_g000001 Rmu_sc0000356.1_g000014
rosa_roxburghii	Rroxscaffold_3G00232350 Rroxscaffold_3G00232370
rosa_rugosa	Rorug04G0458100
rosa_samantha	Rh5AG089800 Rh5BG085300 Rh5CG099200 Rh5DG085100 Rh6AG105400 Rh7AG389100 Rh7AG389300 Rh7BG374900 Rh7BG375200 Rh7CG408400 Rh7DG387100
rosa_wichuraiana	Rw7G032630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	297
AciI	CCGC	1 cut(s)	313
AcuI	CTGAAG	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	289
AflIII	ACRYGT	1 cut(s)	553
AgsI	TTSAA	2 cut(s)	233, 666
AluBI	AGCT	4 cut(s)	459, 467, 643, 705
AluI	AGCT	4 cut(s)	459, 467, 643, 705
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	119
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	1 cut(s)	277
AspS9I	GGNCC	4 cut(s)	4, 269, 449, 677
AvaII	GGWCC	3 cut(s)	4, 449, 677
BanI	GGYRCC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	289
BclI	TGATCA	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	4 cut(s)	138, 377, 644, 706
BglII	AGATCT	2 cut(s)	134, 225
BisI	GCNGC	1 cut(s)	278
BlpI	GCTNAGC	1 cut(s)	701
BlsI	GCNGC	1 cut(s)	279
Bme18I	GGWCC	3 cut(s)	4, 449, 677
BmgT120I	GGNCC	4 cut(s)	4, 269, 449, 677
BmiI	GGNNCC	5 cut(s)	42, 74, 394, 450, 679
BmsI	GCATC	4 cut(s)	214, 363, 511, 608
Bpu1102I	GCTNAGC	1 cut(s)	701
BsaBI	GATNNNNATC	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	265, 695
BsaWI	WCCGGW	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse3DI	GCAATG	2 cut(s)	272, 568
Bse8I	GATNNNNATC	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	265, 695
BseGI	GGATG	3 cut(s)	433, 505, 526
BseJI	GATNNNNATC	1 cut(s)	102
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMI	GCAATG	2 cut(s)	272, 568
BseMII	CTCAG	1 cut(s)	396
BseRI	GAGGAG	6 cut(s)	53, 321, 324, 327, 330, 333
BseXI	GCAGC	1 cut(s)	289
BshFI	GGCC	1 cut(s)	270
BshNI	GGYRCC	1 cut(s)	392
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	347
BslFI	GGGAC	4 cut(s)	176, 462, 591, 663
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmAI	GTCTC	1 cut(s)	119
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	4 cut(s)	176, 462, 591, 663
BsmI	GAATGC	1 cut(s)	573
BsnI	GGCC	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	4 cut(s)	90, 103, 134, 225
Bsp1720I	GCTNAGC	1 cut(s)	701
BspACI	CCGC	1 cut(s)	313
BspANI	GGCC	1 cut(s)	270
BspCNI	CTCAG	1 cut(s)	395
BspLI	GGNNCC	5 cut(s)	42, 74, 394, 450, 679
BspQI	GCTCTTC	1 cut(s)	195
BspT107I	GGYRCC	1 cut(s)	392
BsrDI	GCAATG	2 cut(s)	272, 568
BssECI	CCNNGG	2 cut(s)	265, 695
BssMI	GATC	4 cut(s)	90, 103, 134, 225
BssT1I	CCWWGG	1 cut(s)	695
Bst4CI	ACNGT	2 cut(s)	4, 310
Bst6I	CTCTTC	1 cut(s)	195
BstC8I	GCNNGC	3 cut(s)	538, 542, 584
BstDEI	CTNAG	3 cut(s)	382, 468, 701
BstF5I	GGATG	3 cut(s)	433, 505, 526
BstKTI	GATC	4 cut(s)	93, 106, 137, 228
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	4 cut(s)	90, 103, 134, 225
BstMWI	GCNNNNNNNGC	2 cut(s)	546, 579
BstNSI	RCATGY	1 cut(s)	557
BstV1I	GCAGC	1 cut(s)	289
BstX2I	RGATCY	2 cut(s)	134, 225
BstYI	RGATCY	2 cut(s)	134, 225
BsuRI	GGCC	1 cut(s)	270
BtsCI	GGATG	3 cut(s)	433, 505, 526
Cac8I	GCNNGC	3 cut(s)	538, 542, 584
Cfr13I	GGNCC	4 cut(s)	4, 269, 449, 677
CseI	GACGC	1 cut(s)	101
CspCI	CAANNNNNGTGG	2 cut(s)	33, 68
CviAII	CATG	4 cut(s)	80, 188, 483, 554
DdeI	CTNAG	3 cut(s)	382, 468, 701
DpnI	GATC	4 cut(s)	92, 105, 136, 227
DpnII	GATC	4 cut(s)	90, 103, 134, 225
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	695
Eco47I	GGWCC	3 cut(s)	4, 449, 677
Eco57I	CTGAAG	1 cut(s)	353
EcoO109I	RGGNCCY	1 cut(s)	449
EcoT14I	CCWWGG	1 cut(s)	695
ErhI	CCWWGG	1 cut(s)	695
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	4 cut(s)	83, 191, 486, 557
FaqI	GGGAC	4 cut(s)	176, 462, 591, 663
FatI	CATG	4 cut(s)	79, 187, 482, 553
FbaI	TGATCA	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	278
FokI	GGATG	3 cut(s)	440, 512, 533
Fsp4HI	GCNGC	1 cut(s)	278
FspBI	CTAG	4 cut(s)	138, 377, 644, 706
GluI	GCNGC	1 cut(s)	278
HaeIII	GGCC	1 cut(s)	270
HapII	CCGG	1 cut(s)	347
HgaI	GACGC	1 cut(s)	101
Hin1II	CATG	4 cut(s)	83, 191, 486, 557
HinfI	GANTC	2 cut(s)	380, 479
HpaII	CCGG	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	3 cut(s)	95, 372, 385
Hpy188III	TCNNGA	2 cut(s)	138, 233
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	2 cut(s)	86, 383
HpyCH4III	ACNGT	2 cut(s)	4, 310
HpyCH4V	TGCA	4 cut(s)	277, 325, 524, 573
HpyF10VI	GCNNNNNNNGC	2 cut(s)	546, 579
HpyF3I	CTNAG	3 cut(s)	382, 468, 701
Hsp92II	CATG	4 cut(s)	83, 191, 486, 557
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	4 cut(s)	90, 103, 134, 225
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	2 cut(s)	40, 78
LpnPI	CCDG	5 cut(s)	236, 360, 465, 559, 568
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	4 cut(s)	214, 363, 511, 608
MaeI	CTAG	4 cut(s)	138, 377, 644, 706
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	4 cut(s)	92, 105, 136, 227
MboI	GATC	4 cut(s)	90, 103, 134, 225
MboII	GAAGA	5 cut(s)	38, 41, 74, 212, 654
MfeI	CAATTG	2 cut(s)	531, 672
MflI	RGATCY	2 cut(s)	134, 225
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	5 cut(s)	56, 162, 398, 531, 672
MlyI	GAGTC	1 cut(s)	374
MseI	TTAA	2 cut(s)	161, 285
MspI	CCGG	1 cut(s)	347
MunI	CAATTG	2 cut(s)	531, 672
Mva1269I	GAATGC	1 cut(s)	573
MwoI	GCNNNNNNNGC	2 cut(s)	546, 579
NdeII	GATC	4 cut(s)	90, 103, 134, 225
NlaIII	CATG	4 cut(s)	83, 191, 486, 557
NlaIV	GGNNCC	5 cut(s)	42, 74, 394, 450, 679
NmeAIII	GCCGAG	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	304
NspI	RCATGY	1 cut(s)	557
PciI	ACATGT	1 cut(s)	553
PciSI	GCTCTTC	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PctI	GAATGC	1 cut(s)	573
PfeI	GAWTC	1 cut(s)	479
PkrI	GCNGC	1 cut(s)	279
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
PpuMI	RGGWCCY	1 cut(s)	449
PscI	ACATGT	1 cut(s)	553
Psp5II	RGGWCCY	1 cut(s)	449
PspN4I	GGNNCC	5 cut(s)	42, 74, 394, 450, 679
PspPI	GGNCC	4 cut(s)	4, 269, 449, 677
PspPPI	RGGWCCY	1 cut(s)	449
PsuI	RGATCY	2 cut(s)	134, 225
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	161, 285
SatI	GCNGC	1 cut(s)	278
Sau3AI	GATC	4 cut(s)	90, 103, 134, 225
Sau96I	GGNCC	4 cut(s)	4, 269, 449, 677
SchI	GAGTC	1 cut(s)	374
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	7 cut(s)	16, 240, 454, 461, 469, 645, 707
SfaNI	GCATC	4 cut(s)	214, 363, 511, 608
SinI	GGWCC	3 cut(s)	4, 449, 677
Sse9I	AATT	5 cut(s)	56, 162, 398, 531, 672
SsiI	CCGC	1 cut(s)	313
SspI	AATATT	2 cut(s)	654, 691
SspMI	CTAG	4 cut(s)	138, 377, 644, 706
StyI	CCWWGG	1 cut(s)	695
TaaI	ACNGT	2 cut(s)	4, 310
TasI	AATT	5 cut(s)	56, 162, 398, 531, 672
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	2 cut(s)	161, 285
Tru9I	TTAA	2 cut(s)	161, 285
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	5 cut(s)	39, 68, 155, 159, 551
VpaK11BI	GGWCC	3 cut(s)	4, 449, 677
XbaI	TCTAGA	1 cut(s)	137
XceI	RCATGY	1 cut(s)	557
XmiI	GTMKAC	1 cut(s)	297
XspI	CTAG	4 cut(s)	138, 377, 644, 706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.