Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0010573

Physical Location & Seq

Genomic Coordinates Reverse (-)

50997806 .. 50998147

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG389300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCTAGACTCAGACGACGGCACCGAATTGTTATCCTTGATTACTGATTATGAGGAGGAGGGTTTGGAGAAAGTGGGACCTGATAGCTTGGAAGCTAAGAAACAAGAATCATGTCCTATTTGTATGGATGACTTTGAGGAAAAGGAGGATGCAACCCCAATTGCTCGCTTGCCCTGCTTACATGTTTTTCATAGACATTGCATTCTTGGCTGGCTTCACAGAAATCCCTTATGTCCCTTGTGCCGATGCCCTCCGCGTAAAAAGAGAAAGCTGGAGGAAATATTGTCATCTTCAACTCCAATTGGTCCCTCATCAAATATTCCAAGGCTTATAGCTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

113

Amino Acids

12.73

Weight (kDa)

5.16

Isoelectric Point (pI)

65.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	35 - 82	7.8e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	37 - 82	6.9e-15	Ring finger domain
zf-C3HC4_2	PF13923	38 - 81	3.3e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	38 - 79	5.2e-09	RING-type zinc-finger
zf-C3HC4	PF00097	38 - 81	2.9e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	38 - 68	4.9e-08	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010573)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32280
rosa_laevigata	RLG00000001669 RLG00000001674 RLG00000031849
rosa_multiflora	Rmu_co8422033.1_g000001 Rmu_sc0000356.1_g000014
rosa_roxburghii	Rroxscaffold_3G00232350 Rroxscaffold_3G00232370
rosa_rugosa	Rorug04G0458100
rosa_samantha	Rh5AG089800 Rh5BG085300 Rh5CG099200 Rh5DG085100 Rh6AG105400 Rh7AG389100 Rh7AG389300 Rh7BG374900 Rh7BG375200 Rh7CG408400 Rh7DG387100
rosa_wichuraiana	Rw7G032630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	20
AccII	CGCG	1 cut(s)	256
AciI	CCGC	1 cut(s)	254
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	294
AluBI	AGCT	5 cut(s)	87, 95, 271, 335, 339
AluI	AGCT	5 cut(s)	87, 95, 271, 335, 339
AspS9I	GGNCC	2 cut(s)	77, 305
AsuNHI	GCTAGC	1 cut(s)	335
AvaII	GGWCC	2 cut(s)	77, 305
BanI	GGYRCC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	34
BfaI	CTAG	2 cut(s)	5, 336
Bme18I	GGWCC	2 cut(s)	77, 305
BmgT120I	GGNCC	2 cut(s)	77, 305
BmiI	GGNNCC	3 cut(s)	22, 78, 307
BmsI	GCATC	2 cut(s)	139, 236
BmtI	GCTAGC	1 cut(s)	339
BpmI	CTGGAG	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	323
BseGI	GGATG	2 cut(s)	133, 154
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	24
BseRI	GAGGAG	2 cut(s)	68, 71
Bsh1236I	CGCG	1 cut(s)	256
BshNI	GGYRCC	1 cut(s)	20
BslFI	GGGAC	3 cut(s)	90, 219, 291
BsmFI	GGGAC	3 cut(s)	90, 219, 291
BsmI	GAATGC	1 cut(s)	201
BspACI	CCGC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	23
BspFNI	CGCG	1 cut(s)	256
BspLI	GGNNCC	3 cut(s)	22, 78, 307
BspOI	GCTAGC	1 cut(s)	339
BspT107I	GGYRCC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	323
BssT1I	CCWWGG	1 cut(s)	323
BstC8I	GCNNGC	4 cut(s)	166, 170, 212, 337
BstDEI	CTNAG	2 cut(s)	10, 96
BstF5I	GGATG	2 cut(s)	133, 154
BstFNI	CGCG	1 cut(s)	256
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 207
BstNSI	RCATGY	1 cut(s)	185
BstUI	CGCG	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	133, 154
Cac8I	GCNNGC	4 cut(s)	166, 170, 212, 337
Cfr13I	GGNCC	2 cut(s)	77, 305
CviAII	CATG	2 cut(s)	111, 182
CviJI	RGCY	8 cut(s)	87, 95, 210, 214, 271, 328, 335, 339
CviKI_1	RGCY	8 cut(s)	87, 95, 210, 214, 271, 328, 335, 339
DdeI	CTNAG	2 cut(s)	10, 96
Eco130I	CCWWGG	1 cut(s)	323
Eco47I	GGWCC	2 cut(s)	77, 305
EcoO109I	RGGNCCY	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	2 cut(s)	114, 185
FaiI	YATR	7 cut(s)	51, 112, 125, 183, 192, 232, 332
FaqI	GGGAC	3 cut(s)	90, 219, 291
FatI	CATG	2 cut(s)	110, 181
FokI	GGATG	2 cut(s)	140, 161
FspBI	CTAG	2 cut(s)	5, 336
GsuI	CTGGAG	1 cut(s)	293
Hin1II	CATG	2 cut(s)	114, 185
HinfI	GANTC	2 cut(s)	8, 107
Hpy188I	TCNGA	1 cut(s)	13
Hpy99I	CGWCG	1 cut(s)	20
HpyCH4V	TGCA	2 cut(s)	152, 201
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 207
HpyF3I	CTNAG	2 cut(s)	10, 96
Hsp92II	CATG	2 cut(s)	114, 185
LpnPI	CCDG	4 cut(s)	93, 187, 196, 257
LweI	GCATC	2 cut(s)	139, 236
MaeI	CTAG	2 cut(s)	5, 336
MboII	GAAGA	1 cut(s)	282
MfeI	CAATTG	2 cut(s)	159, 300
MluCI	AATT	3 cut(s)	26, 159, 300
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	8 cut(s)	46, 49, 52, 130, 139, 261, 268, 319
MunI	CAATTG	2 cut(s)	159, 300
Mva1269I	GAATGC	1 cut(s)	201
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	2 cut(s)	174, 207
NheI	GCTAGC	1 cut(s)	335
NlaIII	CATG	2 cut(s)	114, 185
NlaIV	GGNNCC	3 cut(s)	22, 78, 307
NspI	RCATGY	1 cut(s)	185
PciI	ACATGT	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PctI	GAATGC	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	107
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PpuMI	RGGWCCY	1 cut(s)	77
PscI	ACATGT	1 cut(s)	181
Psp5II	RGGWCCY	1 cut(s)	77
PspN4I	GGNNCC	3 cut(s)	22, 78, 307
PspPI	GGNCC	2 cut(s)	77, 305
PspPPI	RGGWCCY	1 cut(s)	77
Sau96I	GGNCC	2 cut(s)	77, 305
SchI	GAGTC	1 cut(s)	2
SetI	ASST	6 cut(s)	82, 89, 97, 273, 337, 341
SfaNI	GCATC	2 cut(s)	139, 236
SinI	GGWCC	2 cut(s)	77, 305
Sse9I	AATT	3 cut(s)	26, 159, 300
SsiI	CCGC	1 cut(s)	254
SspI	AATATT	2 cut(s)	282, 319
SspMI	CTAG	2 cut(s)	5, 336
StyI	CCWWGG	1 cut(s)	323
TasI	AATT	3 cut(s)	26, 159, 300
TfiI	GAWTC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	179
VpaK11BI	GGWCC	2 cut(s)	77, 305
XceI	RCATGY	1 cut(s)	185
XspI	CTAG	2 cut(s)	5, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.