Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010573

Physical Location & Seq

Genomic Coordinates Forward (+)

18035971 .. 18036815

Gene Structure 845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00232370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTCAAGTTCAGTCGTGAGAGAGAGGCAATATGTTTGTAGCTGCGCATATCAAGATTTTGAAGCCAACCCTGACCTCCTAGGCGAGTTGCCCTACAACCCTCCAGACCTGGTTCCAATCGTGTTCAAGCTCTTGAAGACGGTCCAAAGCGGTTTGATTGATGATGAAGATGATGAGGAGCCACCAAGTTTGGAATTGGAAGAATATAGGCTCCTTCATGTAGAAGTGATCAGAGACGTTGGTCTGTCGCGTCTCAAGCTATCATCTCCAAGATCTAGAAGTGAACTCAAAGAGCGCTTCATTCATATTCTTTCCACAAAACTCCATGTCCCAGAAGAAGAGCATCAAACTATCATTGACCAGATCTTTCAAGAGGTTGATAAGGATTGCCGGCGTTTTCCCCTCCGCCCGTTGCGGCCCCTTAAAGTGGCTGTAGACAATGTGACTATGCTAGACTCAGACGACGGCATCGAATTGTTATCCTTGATTACTGATTATGAGGAGGAGGGTTTGGAGAAAGTGGGACCTGATAGCTTGGAAGCTAAGAAACAAGAATCATGTCCTATTTGTATGGATGACTTTGAGGAAAAGGAGGATGCAGCCCCAATTGCTCGCTTGCCCTGCTTACATGTTTTTCATAGACATTGCATTCTTGGCTGGCTTCACAGAAATCCCTTGTGTCCCTTGTGCCGATGCCCTCTGCGTAAAAAGAGAAAGCTAGAGGAAATATTGTCATCTTCAACTCCGATTGGTCCCTCATCAAATATTCCAAGGCTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

260

Amino Acids

29.8

Weight (kDa)

5.03

Isoelectric Point (pI)

64.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	185 - 231	5e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	186 - 231	3.4e-14	Ring finger domain
zf-C3HC4_2	PF13923	187 - 230	2.2e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	187 - 228	3.9e-08	RING-type zinc-finger
zf-C3HC4	PF00097	187 - 230	1e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	187 - 217	2e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010573)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32280
rosa_laevigata	RLG00000001669 RLG00000001674 RLG00000031849
rosa_multiflora	Rmu_co8422033.1_g000001 Rmu_sc0000356.1_g000014
rosa_roxburghii	Rroxscaffold_3G00232350 Rroxscaffold_3G00232370
rosa_rugosa	Rorug04G0458100
rosa_samantha	Rh5AG089800 Rh5BG085300 Rh5CG099200 Rh5DG085100 Rh6AG105400 Rh7AG389100 Rh7AG389300 Rh7BG374900 Rh7BG375200 Rh7CG408400 Rh7DG387100
rosa_wichuraiana	Rw7G032630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	46
AccI	GTMKAC	1 cut(s)	435
AccII	CGCG	1 cut(s)	250
AciI	CCGC	3 cut(s)	150, 406, 415
AfeI	AGCGCT	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	427
AflIII	ACRYGT	1 cut(s)	628
AgsI	TTSAA	5 cut(s)	62, 127, 136, 371, 741
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	7 cut(s)	42, 130, 259, 534, 542, 718, 780
AluI	AGCT	7 cut(s)	42, 130, 259, 534, 542, 718, 780
Alw26I	GTCTC	2 cut(s)	228, 257
Aor51HI	AGCGCT	1 cut(s)	296
AoxI	GGCC	1 cut(s)	416
ApeKI	GCWGC	2 cut(s)	42, 599
AspA2I	CCTAGG	1 cut(s)	79
AspLEI	GCGC	2 cut(s)	47, 297
AspS9I	GGNCC	4 cut(s)	142, 417, 524, 752
AvaII	GGWCC	3 cut(s)	142, 524, 752
AvrII	CCTAGG	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	29, 611
BceAI	ACGGC	1 cut(s)	481
BciT130I	CCWGG	1 cut(s)	110
BclI	TGATCA	1 cut(s)	228
BcoDI	GTCTC	2 cut(s)	228, 257
BfaI	CTAG	4 cut(s)	80, 276, 452, 719
BfmI	CTRYAG	1 cut(s)	432
BfoI	RGCGCY	1 cut(s)	298
BglII	AGATCT	2 cut(s)	272, 363
BisI	GCNGC	3 cut(s)	43, 416, 600
BlnI	CCTAGG	1 cut(s)	79
BlpI	GCTNAGC	1 cut(s)	776
BlsI	GCNGC	3 cut(s)	44, 417, 601
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	3 cut(s)	142, 524, 752
BmgT120I	GGNCC	4 cut(s)	142, 417, 524, 752
BmiI	GGNNCC	6 cut(s)	114, 180, 212, 419, 525, 754
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	4 cut(s)	352, 477, 586, 683
BoxI	GACNNNNGTC	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	143
BpmI	CTGGAG	1 cut(s)	87
Bpu1102I	GCTNAGC	1 cut(s)	776
BpuEI	CTTGAG	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	79, 770
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse118I	RCCGGY	1 cut(s)	390
Bse3DI	GCAATG	1 cut(s)	643
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	79, 770
BseGI	GGATG	2 cut(s)	580, 601
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMI	GCAATG	1 cut(s)	643
BseMII	CTCAG	1 cut(s)	471
BseRI	GAGGAG	3 cut(s)	191, 515, 518
BseXI	GCAGC	2 cut(s)	29, 611
Bsh1236I	CGCG	1 cut(s)	250
BshFI	GGCC	1 cut(s)	418
BsiSI	CCGG	1 cut(s)	391
BslFI	GGGAC	4 cut(s)	314, 537, 666, 738
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	2 cut(s)	228, 257
BsmBI	CGTCTC	2 cut(s)	228, 257
BsmFI	GGGAC	4 cut(s)	314, 537, 666, 738
BsmI	GAATGC	1 cut(s)	648
BsnI	GGCC	1 cut(s)	418
Bsp143I	GATC	3 cut(s)	228, 272, 363
Bsp1720I	GCTNAGC	1 cut(s)	776
BspACI	CCGC	3 cut(s)	150, 406, 415
BspANI	GGCC	1 cut(s)	418
BspCNI	CTCAG	1 cut(s)	470
BspFNI	CGCG	1 cut(s)	250
BspLI	GGNNCC	6 cut(s)	114, 180, 212, 419, 525, 754
BspQI	GCTCTTC	1 cut(s)	333
BsrDI	GCAATG	1 cut(s)	643
BsrFI	RCCGGY	1 cut(s)	390
BssAI	RCCGGY	1 cut(s)	390
BssECI	CCNNGG	2 cut(s)	79, 770
BssMI	GATC	3 cut(s)	228, 272, 363
BssT1I	CCWWGG	2 cut(s)	79, 770
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	1 cut(s)	333
BstC8I	GCNNGC	4 cut(s)	392, 613, 617, 659
BstDEI	CTNAG	3 cut(s)	457, 543, 776
BstF5I	GGATG	2 cut(s)	580, 601
BstFNI	CGCG	1 cut(s)	250
BstH2I	RGCGCY	1 cut(s)	298
BstHHI	GCGC	2 cut(s)	47, 297
BstKTI	GATC	3 cut(s)	231, 275, 366
BstMAI	GTCTC	2 cut(s)	228, 257
BstMBI	GATC	3 cut(s)	228, 272, 363
BstMWI	GCNNNNNNNGC	4 cut(s)	256, 608, 621, 654
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	632
BstPAI	GACNNNNGTC	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	432
BstUI	CGCG	1 cut(s)	250
BstV1I	GCAGC	2 cut(s)	29, 611
BstV2I	GAAGAC	1 cut(s)	143
BstX2I	RGATCY	2 cut(s)	272, 363
BstYI	RGATCY	2 cut(s)	272, 363
BsuRI	GGCC	1 cut(s)	418
BtsCI	GGATG	2 cut(s)	580, 601
Cac8I	GCNNGC	4 cut(s)	392, 613, 617, 659
CfoI	GCGC	2 cut(s)	47, 297
Cfr10I	RCCGGY	1 cut(s)	390
Cfr13I	GGNCC	4 cut(s)	142, 417, 524, 752
CseI	GACGC	1 cut(s)	239
CsiI	ACCWGGT	1 cut(s)	108
CspCI	CAANNNNNGTGG	2 cut(s)	171, 206
CviAII	CATG	4 cut(s)	218, 326, 558, 629
DdeI	CTNAG	3 cut(s)	457, 543, 776
DpnI	GATC	3 cut(s)	230, 274, 365
DpnII	GATC	3 cut(s)	228, 272, 363
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
EciI	GGCGGA	1 cut(s)	395
Eco130I	CCWWGG	2 cut(s)	79, 770
Eco47I	GGWCC	3 cut(s)	142, 524, 752
Eco47III	AGCGCT	1 cut(s)	296
EcoO109I	RGGNCCY	1 cut(s)	524
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	2 cut(s)	79, 770
ErhI	CCWWGG	2 cut(s)	79, 770
Esp3I	CGTCTC	2 cut(s)	228, 257
FaeI	CATG	4 cut(s)	221, 329, 561, 632
FaqI	GGGAC	4 cut(s)	314, 537, 666, 738
FatI	CATG	4 cut(s)	217, 325, 557, 628
FbaI	TGATCA	1 cut(s)	228
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	3 cut(s)	43, 416, 600
FokI	GGATG	2 cut(s)	587, 608
Fsp4HI	GCNGC	3 cut(s)	43, 416, 600
FspBI	CTAG	4 cut(s)	80, 276, 452, 719
FspI	TGCGCA	1 cut(s)	46
GlaI	GCGC	2 cut(s)	46, 296
GluI	GCNGC	3 cut(s)	43, 416, 600
GsuI	CTGGAG	1 cut(s)	87
HaeII	RGCGCY	1 cut(s)	298
HaeIII	GGCC	1 cut(s)	418
HapII	CCGG	1 cut(s)	391
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	2 cut(s)	47, 297
Hin1II	CATG	4 cut(s)	221, 329, 561, 632
Hin6I	GCGC	2 cut(s)	45, 295
HinP1I	GCGC	2 cut(s)	45, 295
HinfI	GANTC	2 cut(s)	455, 554
HpaII	CCGG	1 cut(s)	391
Hpy166II	GTNNAC	2 cut(s)	284, 436
Hpy188I	TCNGA	3 cut(s)	233, 460, 747
Hpy188III	TCNNGA	6 cut(s)	16, 53, 104, 133, 276, 371
Hpy8I	GTNNAC	2 cut(s)	284, 436
Hpy99I	CGWCG	1 cut(s)	467
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	2 cut(s)	599, 648
HpyF10VI	GCNNNNNNNGC	4 cut(s)	256, 608, 621, 654
HpyF3I	CTNAG	3 cut(s)	457, 543, 776
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	4 cut(s)	221, 329, 561, 632
HspAI	GCGC	2 cut(s)	45, 295
KroI	GCCGGC	1 cut(s)	390
KroNI	GCCGGC	1 cut(s)	392
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	228, 272, 363
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	2 cut(s)	178, 216
Lsp1109I	GCAGC	2 cut(s)	29, 611
LweI	GCATC	4 cut(s)	352, 477, 586, 683
MabI	ACCWGGT	1 cut(s)	108
MaeI	CTAG	4 cut(s)	80, 276, 452, 719
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	3 cut(s)	230, 274, 365
MboI	GATC	3 cut(s)	228, 272, 363
MboII	GAAGA	6 cut(s)	148, 179, 212, 347, 350, 729
MfeI	CAATTG	1 cut(s)	606
MflI	RGATCY	2 cut(s)	272, 363
MluCI	AATT	3 cut(s)	194, 473, 606
MlyI	GAGTC	1 cut(s)	449
MroNI	GCCGGC	1 cut(s)	390
MseI	TTAA	1 cut(s)	423
MspI	CCGG	1 cut(s)	391
MspR9I	CCNGG	1 cut(s)	110
MunI	CAATTG	1 cut(s)	606
Mva1269I	GAATGC	1 cut(s)	648
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	250
MwoI	GCNNNNNNNGC	4 cut(s)	256, 608, 621, 654
NaeI	GCCGGC	1 cut(s)	392
NdeII	GATC	3 cut(s)	228, 272, 363
NgoMIV	GCCGGC	1 cut(s)	390
NlaIII	CATG	4 cut(s)	221, 329, 561, 632
NlaIV	GGNNCC	6 cut(s)	114, 180, 212, 419, 525, 754
NmuCI	GTSAC	1 cut(s)	442
NsbI	TGCGCA	1 cut(s)	46
NspI	RCATGY	1 cut(s)	632
PciI	ACATGT	1 cut(s)	628
PciSI	GCTCTTC	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	1 cut(s)	468
PctI	GAATGC	1 cut(s)	648
PdiI	GCCGGC	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	554
PkrI	GCNGC	3 cut(s)	44, 417, 601
PleI	GAGTC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	449
PpuMI	RGGWCCY	1 cut(s)	524
PscI	ACATGT	1 cut(s)	628
PshAI	GACNNNNGTC	1 cut(s)	240
Psp5II	RGGWCCY	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	6 cut(s)	114, 180, 212, 419, 525, 754
PspPI	GGNCC	4 cut(s)	142, 417, 524, 752
PspPPI	RGGWCCY	1 cut(s)	524
PsuI	RGATCY	2 cut(s)	272, 363
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	3 cut(s)	43, 416, 600
Sau3AI	GATC	3 cut(s)	228, 272, 363
Sau96I	GGNCC	4 cut(s)	142, 417, 524, 752
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	1 cut(s)	110
SexAI	ACCWGGT	1 cut(s)	108
SfaNI	GCATC	4 cut(s)	352, 477, 586, 683
SfcI	CTRYAG	1 cut(s)	432
SinI	GGWCC	3 cut(s)	142, 524, 752
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	3 cut(s)	194, 473, 606
SsiI	CCGC	3 cut(s)	150, 406, 415
SspI	AATATT	2 cut(s)	729, 766
SspMI	CTAG	4 cut(s)	80, 276, 452, 719
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	2 cut(s)	79, 770
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	471
TasI	AATT	3 cut(s)	194, 473, 606
TauI	GCSGC	1 cut(s)	418
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	2 cut(s)	42, 599
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	5 cut(s)	180, 206, 289, 293, 626
VpaK11BI	GGWCC	3 cut(s)	142, 524, 752
XbaI	TCTAGA	1 cut(s)	275
XceI	RCATGY	1 cut(s)	632
XmaJI	CCTAGG	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	435
XspI	CTAG	4 cut(s)	80, 276, 452, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.