Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010573

Physical Location & Seq

Genomic Coordinates Reverse (-)

40364348 .. 40364740

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG375200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTCAAGTTCAGTCGTGAGAGAGAGGCAATATATTTGTAGCTGCGCGTATCAAGATTTCGAAGCCAACCCTGACCTCCTATGCGAGTTGCCCTACAACCCTCCGGACCTGGTTCCAATCGTGTTCAAGCTCTTGAAGACGGTCCGAAGCGGTTTGATTGACGATGAAGATGATGAGGAGCCAACAAGTTTGGAATTGGAAGAATATAGGCTCCTTCATGAAGAAGTGATCAGGGACGTTGGTCTGTCGCGTCTTAAGCTATCATCTCCAAGATCTAGAAGTGAATTCTTTCCACAAAACTCCATGTCCCAGAAGAAAAGCATCAAACTATCATTGACCAGATCTTTCAAGAGGTTGATAAGGATTGCCGGCGTTTTCCCCTCCGCCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

14.92

Weight (kDa)

5.5

Isoelectric Point (pI)

62.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010573)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32280
rosa_laevigata	RLG00000001669 RLG00000001674 RLG00000031849
rosa_multiflora	Rmu_co8422033.1_g000001 Rmu_sc0000356.1_g000014
rosa_roxburghii	Rroxscaffold_3G00232350 Rroxscaffold_3G00232370
rosa_rugosa	Rorug04G0458100
rosa_samantha	Rh5AG089800 Rh5BG085300 Rh5CG099200 Rh5DG085100 Rh6AG105400 Rh7AG389100 Rh7AG389300 Rh7BG374900 Rh7BG375200 Rh7CG408400 Rh7DG387100
rosa_wichuraiana	Rw7G032630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	47, 250
AccIII	TCCGGA	1 cut(s)	103
AciI	CCGC	2 cut(s)	150, 384
AcsI	RAATTY	1 cut(s)	284
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	3 cut(s)	127, 136, 349
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	3 cut(s)	42, 130, 259
AluI	AGCT	3 cut(s)	42, 130, 259
Aor13HI	TCCGGA	1 cut(s)	103
ApeKI	GCWGC	1 cut(s)	42
ApoI	RAATTY	1 cut(s)	284
Asp700I	GAANNNNTTC	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	106, 142
AsuII	TTCGAA	1 cut(s)	60
AvaII	GGWCC	2 cut(s)	106, 142
BbsI	GAAGAC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	110
BclI	TGATCA	1 cut(s)	228
BfaI	CTAG	1 cut(s)	276
BfrI	CTTAAG	1 cut(s)	254
BglII	AGATCT	2 cut(s)	272, 341
BisI	GCNGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	2 cut(s)	106, 142
BmgT120I	GGNCC	2 cut(s)	106, 142
BmiI	GGNNCC	3 cut(s)	114, 180, 212
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	330
BoxI	GACNNNNGTC	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	143
Bpu14I	TTCGAA	1 cut(s)	60
BsaWI	WCCGGW	1 cut(s)	103
Bse118I	RCCGGY	1 cut(s)	368
BseAI	TCCGGA	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	110
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	29
Bsh1236I	CGCG	2 cut(s)	47, 250
BsiSI	CCGG	2 cut(s)	104, 369
BslFI	GGGAC	2 cut(s)	248, 292
BsmFI	GGGAC	2 cut(s)	248, 292
Bsp119I	TTCGAA	1 cut(s)	60
Bsp13I	TCCGGA	1 cut(s)	103
Bsp143I	GATC	3 cut(s)	228, 272, 341
BspACI	CCGC	2 cut(s)	150, 384
BspEI	TCCGGA	1 cut(s)	103
BspFNI	CGCG	2 cut(s)	47, 250
BspHI	TCATGA	1 cut(s)	217
BspLI	GGNNCC	3 cut(s)	114, 180, 212
BspT104I	TTCGAA	1 cut(s)	60
BspTI	CTTAAG	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	368
BssAI	RCCGGY	1 cut(s)	368
BssMI	GATC	3 cut(s)	228, 272, 341
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	142
BstAFI	CTTAAG	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	370
BstFNI	CGCG	2 cut(s)	47, 250
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	3 cut(s)	231, 275, 344
BstMBI	GATC	3 cut(s)	228, 272, 341
BstMWI	GCNNNNNNNGC	1 cut(s)	256
BstNI	CCWGG	1 cut(s)	110
BstPAI	GACNNNNGTC	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	108
BstUI	CGCG	2 cut(s)	47, 250
BstV1I	GCAGC	1 cut(s)	29
BstV2I	GAAGAC	1 cut(s)	143
BstX2I	RGATCY	2 cut(s)	272, 341
BstYI	RGATCY	2 cut(s)	272, 341
Cac8I	GCNNGC	1 cut(s)	370
CciI	TCATGA	1 cut(s)	217
CfoI	GCGC	1 cut(s)	47
Cfr10I	RCCGGY	1 cut(s)	368
Cfr13I	GGNCC	2 cut(s)	106, 142
CpoI	CGGWCCG	1 cut(s)	142
CseI	GACGC	1 cut(s)	239
CsiI	ACCWGGT	1 cut(s)	108
CspI	CGGWCCG	1 cut(s)	142
CviAII	CATG	2 cut(s)	218, 304
CviJI	RGCY	6 cut(s)	42, 65, 130, 181, 211, 259
CviKI_1	RGCY	6 cut(s)	42, 65, 130, 181, 211, 259
DpnI	GATC	3 cut(s)	230, 274, 343
DpnII	GATC	3 cut(s)	228, 272, 341
EciI	GGCGGA	1 cut(s)	373
Eco47I	GGWCC	2 cut(s)	106, 142
EcoRI	GAATTC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	108
FaeI	CATG	2 cut(s)	221, 307
FaiI	YATR	5 cut(s)	33, 82, 207, 219, 305
FaqI	GGGAC	2 cut(s)	248, 292
FatI	CATG	2 cut(s)	217, 303
FbaI	TGATCA	1 cut(s)	228
Fnu4HI	GCNGC	1 cut(s)	43
Fsp4HI	GCNGC	1 cut(s)	43
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	1 cut(s)	43
HapII	CCGG	2 cut(s)	104, 369
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	2 cut(s)	221, 307
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HpaII	CCGG	2 cut(s)	104, 369
Hpy188I	TCNGA	1 cut(s)	146
Hpy188III	TCNNGA	7 cut(s)	16, 53, 104, 133, 218, 276, 349
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	256
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	221, 307
HspAI	GCGC	1 cut(s)	45
Kpn2I	TCCGGA	1 cut(s)	103
KroI	GCCGGC	1 cut(s)	368
KroNI	GCCGGC	1 cut(s)	370
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	228, 272, 341
LmnI	GCTCC	2 cut(s)	178, 216
LpnPI	CCDG	8 cut(s)	84, 95, 117, 122, 217, 323, 352, 382
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	1 cut(s)	330
MabI	ACCWGGT	1 cut(s)	108
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	1 cut(s)	237
MalI	GATC	3 cut(s)	230, 274, 343
MboI	GATC	3 cut(s)	228, 272, 341
MboII	GAAGA	5 cut(s)	148, 179, 212, 233, 325
MflI	RGATCY	2 cut(s)	272, 341
MluCI	AATT	2 cut(s)	194, 284
MnlI	CCTC	6 cut(s)	18, 86, 111, 169, 345, 391
MroI	TCCGGA	1 cut(s)	103
MroNI	GCCGGC	1 cut(s)	368
MroXI	GAANNNNTTC	1 cut(s)	288
MseI	TTAA	2 cut(s)	255, 391
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	2 cut(s)	104, 369
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	2 cut(s)	47, 250
MwoI	GCNNNNNNNGC	1 cut(s)	256
NaeI	GCCGGC	1 cut(s)	370
NdeII	GATC	3 cut(s)	228, 272, 341
NgoMIV	GCCGGC	1 cut(s)	368
NlaIII	CATG	2 cut(s)	221, 307
NlaIV	GGNNCC	3 cut(s)	114, 180, 212
NspV	TTCGAA	1 cut(s)	60
PagI	TCATGA	1 cut(s)	217
PdiI	GCCGGC	1 cut(s)	370
PdmI	GAANNNNTTC	1 cut(s)	288
PkrI	GCNGC	1 cut(s)	44
PshAI	GACNNNNGTC	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	3 cut(s)	114, 180, 212
PspPI	GGNCC	2 cut(s)	106, 142
PsuI	RGATCY	2 cut(s)	272, 341
Rsr2I	CGGWCCG	1 cut(s)	142
RsrII	CGGWCCG	1 cut(s)	142
SaqAI	TTAA	2 cut(s)	255, 391
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	3 cut(s)	228, 272, 341
Sau96I	GGNCC	2 cut(s)	106, 142
ScrFI	CCNGG	1 cut(s)	110
SetI	ASST	7 cut(s)	44, 78, 111, 132, 240, 261, 356
SexAI	ACCWGGT	1 cut(s)	108
SfaNI	GCATC	1 cut(s)	330
SfuI	TTCGAA	1 cut(s)	60
SinI	GGWCC	2 cut(s)	106, 142
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	2 cut(s)	194, 284
SsiI	CCGC	2 cut(s)	150, 384
SspMI	CTAG	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	60
TasI	AATT	2 cut(s)	194, 284
Tru1I	TTAA	2 cut(s)	255, 391
Tru9I	TTAA	2 cut(s)	255, 391
TseI	GCWGC	1 cut(s)	42
TspDTI	ATGAA	3 cut(s)	180, 206, 234
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	2 cut(s)	106, 142
XapI	RAATTY	1 cut(s)	284
XbaI	TCTAGA	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.