Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0010573

Physical Location & Seq

Genomic Coordinates Reverse (-)

52844064 .. 52845168

Gene Structure 1105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG387100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTCAAGTTCAGTTGTGAGAGAGAGGCAATATATTTGTAGCTGCGCATATCAAGATTTCGAAGCCAACCCTGACCTCCTAGGCGAGTTGCCCTACAACCCTCCAGACCTGGTTCCAATCGTGTTCAAGCTCTTGAAGACGGTCCGAAGCGGTTTGATTGATGATGAAGATGATGAGGAGCCACCAAGTTTGGAATTGGAAGAATATAGGCTCCTTCATGTAGAAGTGATCAGGGACGTTGGTCTGTCGCGTCTCAAGCTATCATCTCCAAGATCTAGAAGTGAACTCAAAGAGCGCTTCATTCATATTCTTTCCACAAAACTCCATGTCCCAGAAGAAGAGCATCAAACTATCATTGACCAGATCTTTCAAGAGGTTGATAAGGATTGCCGGCGTTTTCCTCTCCGCCCATTGCGGCCCCTTAAAGTGGCTGTAGACAATGTGACTGTGCGGTTGCGATTGCGCACTCCTCCTCCTCCTCCTCCTCCTCCTCCGGTTGATTTTGATGTTTTCCTGCAGATGCTAGACTCAGACGACGGCAACGAATTGTTATCCTTGATTACTGATTATGAGGAGGAGGGTTTGGAGAAAGTGGGACCTGATAGCTTGGAAGCTAAGAAACAAGAATCATGTCCTATTTGTATGGATGACTTTGAGGAAAAGGAGGATGCAGCCCCAATTGCTCGCTTGCCCTGCTTACATGTTTTTCATAGACATTGCATTCTTTGCTGGCTTCACAGAAATCCCTTGTGTCCCTTGTGCCGATGCCCTCTGCGTAAAAAGAGAAAGCTAGAGGAAATATTGTCATCTTCAACTCCAATTGGTCCCTCATCAAATATTCCAAGGCTTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

284

Amino Acids

32.62

Weight (kDa)

5.17

Isoelectric Point (pI)

67.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	209 - 255	8.1e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	210 - 255	7.7e-13	Ring finger domain
zf-C3HC4_2	PF13923	211 - 254	5.2e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	211 - 241	2.2e-07	RING-like zinc finger
zf-RING_UBOX	PF13445	211 - 252	3.9e-07	RING-type zinc-finger
zf-C3HC4	PF00097	211 - 254	3.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010573)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32280
rosa_laevigata	RLG00000001669 RLG00000001674 RLG00000031849
rosa_multiflora	Rmu_co8422033.1_g000001 Rmu_sc0000356.1_g000014
rosa_roxburghii	Rroxscaffold_3G00232350 Rroxscaffold_3G00232370
rosa_rugosa	Rorug04G0458100
rosa_samantha	Rh5AG089800 Rh5BG085300 Rh5CG099200 Rh5DG085100 Rh6AG105400 Rh7AG389100 Rh7AG389300 Rh7BG374900 Rh7BG375200 Rh7CG408400 Rh7DG387100
rosa_wichuraiana	Rw7G032630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	46, 464
AccI	GTMKAC	1 cut(s)	435
AccII	CGCG	1 cut(s)	250
AciI	CCGC	4 cut(s)	150, 406, 415, 451
AfeI	AGCGCT	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	427
AflIII	ACRYGT	1 cut(s)	700
AgsI	TTSAA	4 cut(s)	127, 136, 371, 813
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	7 cut(s)	42, 130, 259, 606, 614, 790, 852
AluI	AGCT	7 cut(s)	42, 130, 259, 606, 614, 790, 852
Alw26I	GTCTC	1 cut(s)	257
Aor51HI	AGCGCT	1 cut(s)	296
AoxI	GGCC	1 cut(s)	416
ApeKI	GCWGC	2 cut(s)	42, 671
AspA2I	CCTAGG	1 cut(s)	79
AspLEI	GCGC	3 cut(s)	47, 297, 465
AspS9I	GGNCC	4 cut(s)	142, 417, 596, 824
AsuII	TTCGAA	1 cut(s)	60
AvaII	GGWCC	3 cut(s)	142, 596, 824
AvrII	CCTAGG	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	29, 683
BceAI	ACGGC	1 cut(s)	553
BciT130I	CCWGG	1 cut(s)	110
BclI	TGATCA	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	5 cut(s)	80, 276, 524, 791, 853
BfmI	CTRYAG	2 cut(s)	432, 515
BfoI	RGCGCY	1 cut(s)	298
BglII	AGATCT	2 cut(s)	272, 363
BisI	GCNGC	3 cut(s)	43, 416, 672
BlnI	CCTAGG	1 cut(s)	79
BlpI	GCTNAGC	1 cut(s)	848
BlsI	GCNGC	3 cut(s)	44, 417, 673
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	3 cut(s)	142, 596, 824
BmgT120I	GGNCC	4 cut(s)	142, 417, 596, 824
BmiI	GGNNCC	6 cut(s)	114, 180, 212, 419, 597, 826
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	4 cut(s)	352, 510, 658, 755
BoxI	GACNNNNGTC	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	143
BpmI	CTGGAG	1 cut(s)	87
Bpu1102I	GCTNAGC	1 cut(s)	848
Bpu14I	TTCGAA	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	79, 842
BsaWI	WCCGGW	1 cut(s)	493
BsaXI	ACNNNNNCTCC	2 cut(s)	457, 487
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse118I	RCCGGY	1 cut(s)	390
Bse3DI	GCAATG	2 cut(s)	410, 715
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	79, 842
BseGI	GGATG	2 cut(s)	652, 673
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMI	GCAATG	2 cut(s)	410, 715
BseMII	CTCAG	1 cut(s)	543
BseXI	GCAGC	2 cut(s)	29, 683
Bsh1236I	CGCG	1 cut(s)	250
BshFI	GGCC	1 cut(s)	418
BsiSI	CCGG	2 cut(s)	391, 494
BslFI	GGGAC	5 cut(s)	248, 314, 609, 738, 810
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	1 cut(s)	257
BsmBI	CGTCTC	1 cut(s)	257
BsmFI	GGGAC	5 cut(s)	248, 314, 609, 738, 810
BsmI	GAATGC	1 cut(s)	720
BsnI	GGCC	1 cut(s)	418
Bsp119I	TTCGAA	1 cut(s)	60
Bsp143I	GATC	3 cut(s)	228, 272, 363
Bsp1720I	GCTNAGC	1 cut(s)	848
BspACI	CCGC	4 cut(s)	150, 406, 415, 451
BspANI	GGCC	1 cut(s)	418
BspCNI	CTCAG	1 cut(s)	542
BspFNI	CGCG	1 cut(s)	250
BspLI	GGNNCC	6 cut(s)	114, 180, 212, 419, 597, 826
BspMAI	CTGCAG	1 cut(s)	519
BspQI	GCTCTTC	1 cut(s)	333
BspT104I	TTCGAA	1 cut(s)	60
BsrDI	GCAATG	2 cut(s)	410, 715
BsrFI	RCCGGY	1 cut(s)	390
BssAI	RCCGGY	1 cut(s)	390
BssECI	CCNNGG	2 cut(s)	79, 842
BssMI	GATC	3 cut(s)	228, 272, 363
BssT1I	CCWWGG	2 cut(s)	79, 842
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	2 cut(s)	142, 448
Bst6I	CTCTTC	1 cut(s)	333
BstAPI	GCANNNNNTGC	1 cut(s)	726
BstBI	TTCGAA	1 cut(s)	60
BstC8I	GCNNGC	4 cut(s)	392, 685, 689, 731
BstDEI	CTNAG	3 cut(s)	529, 615, 848
BstF5I	GGATG	2 cut(s)	652, 673
BstFNI	CGCG	1 cut(s)	250
BstH2I	RGCGCY	1 cut(s)	298
BstHHI	GCGC	3 cut(s)	47, 297, 465
BstKTI	GATC	3 cut(s)	231, 275, 366
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	3 cut(s)	228, 272, 363
BstMWI	GCNNNNNNNGC	4 cut(s)	256, 680, 693, 726
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	704
BstPAI	GACNNNNGTC	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	2 cut(s)	432, 515
BstUI	CGCG	1 cut(s)	250
BstV1I	GCAGC	2 cut(s)	29, 683
BstV2I	GAAGAC	1 cut(s)	143
BstX2I	RGATCY	2 cut(s)	272, 363
BstYI	RGATCY	2 cut(s)	272, 363
BsuRI	GGCC	1 cut(s)	418
BtsCI	GGATG	2 cut(s)	652, 673
Cac8I	GCNNGC	4 cut(s)	392, 685, 689, 731
CfoI	GCGC	3 cut(s)	47, 297, 465
Cfr10I	RCCGGY	1 cut(s)	390
Cfr13I	GGNCC	4 cut(s)	142, 417, 596, 824
CpoI	CGGWCCG	1 cut(s)	142
CseI	GACGC	1 cut(s)	239
CsiI	ACCWGGT	1 cut(s)	108
CspCI	CAANNNNNGTGG	2 cut(s)	171, 206
CspI	CGGWCCG	1 cut(s)	142
CviAII	CATG	4 cut(s)	218, 326, 630, 701
DdeI	CTNAG	3 cut(s)	529, 615, 848
DpnI	GATC	3 cut(s)	230, 274, 365
DpnII	GATC	3 cut(s)	228, 272, 363
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
EciI	GGCGGA	1 cut(s)	395
Eco130I	CCWWGG	2 cut(s)	79, 842
Eco47I	GGWCC	3 cut(s)	142, 596, 824
Eco47III	AGCGCT	1 cut(s)	296
EcoO109I	RGGNCCY	1 cut(s)	596
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	2 cut(s)	79, 842
ErhI	CCWWGG	2 cut(s)	79, 842
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	4 cut(s)	221, 329, 633, 704
FaqI	GGGAC	5 cut(s)	248, 314, 609, 738, 810
FatI	CATG	4 cut(s)	217, 325, 629, 700
FbaI	TGATCA	1 cut(s)	228
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	3 cut(s)	43, 416, 672
FokI	GGATG	2 cut(s)	659, 680
Fsp4HI	GCNGC	3 cut(s)	43, 416, 672
FspBI	CTAG	5 cut(s)	80, 276, 524, 791, 853
FspI	TGCGCA	2 cut(s)	46, 464
GlaI	GCGC	3 cut(s)	46, 296, 464
GluI	GCNGC	3 cut(s)	43, 416, 672
GsuI	CTGGAG	1 cut(s)	87
HaeII	RGCGCY	1 cut(s)	298
HaeIII	GGCC	1 cut(s)	418
HapII	CCGG	2 cut(s)	391, 494
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	3 cut(s)	47, 297, 465
Hin1II	CATG	4 cut(s)	221, 329, 633, 704
Hin6I	GCGC	3 cut(s)	45, 295, 463
HinP1I	GCGC	3 cut(s)	45, 295, 463
HinfI	GANTC	2 cut(s)	527, 626
HpaII	CCGG	2 cut(s)	391, 494
Hpy166II	GTNNAC	2 cut(s)	284, 436
Hpy188I	TCNGA	2 cut(s)	146, 532
Hpy188III	TCNNGA	5 cut(s)	53, 104, 133, 276, 371
Hpy8I	GTNNAC	2 cut(s)	284, 436
Hpy99I	CGWCG	1 cut(s)	539
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	2 cut(s)	142, 448
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	3 cut(s)	517, 671, 720
HpyF10VI	GCNNNNNNNGC	4 cut(s)	256, 680, 693, 726
HpyF3I	CTNAG	3 cut(s)	529, 615, 848
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	4 cut(s)	221, 329, 633, 704
HspAI	GCGC	3 cut(s)	45, 295, 463
KroI	GCCGGC	1 cut(s)	390
KroNI	GCCGGC	1 cut(s)	392
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	228, 272, 363
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	2 cut(s)	178, 216
Lsp1109I	GCAGC	2 cut(s)	29, 683
LweI	GCATC	4 cut(s)	352, 510, 658, 755
MabI	ACCWGGT	1 cut(s)	108
MaeI	CTAG	5 cut(s)	80, 276, 524, 791, 853
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	3 cut(s)	230, 274, 365
MboI	GATC	3 cut(s)	228, 272, 363
MboII	GAAGA	6 cut(s)	148, 179, 212, 347, 350, 801
MfeI	CAATTG	2 cut(s)	678, 819
MflI	RGATCY	2 cut(s)	272, 363
MluCI	AATT	4 cut(s)	194, 545, 678, 819
MlyI	GAGTC	1 cut(s)	521
MroNI	GCCGGC	1 cut(s)	390
MseI	TTAA	1 cut(s)	423
MspI	CCGG	2 cut(s)	391, 494
MspR9I	CCNGG	1 cut(s)	110
MunI	CAATTG	2 cut(s)	678, 819
Mva1269I	GAATGC	1 cut(s)	720
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	250
MwoI	GCNNNNNNNGC	4 cut(s)	256, 680, 693, 726
NaeI	GCCGGC	1 cut(s)	392
NdeII	GATC	3 cut(s)	228, 272, 363
NgoMIV	GCCGGC	1 cut(s)	390
NlaIII	CATG	4 cut(s)	221, 329, 633, 704
NlaIV	GGNNCC	6 cut(s)	114, 180, 212, 419, 597, 826
NmuCI	GTSAC	1 cut(s)	442
NsbI	TGCGCA	2 cut(s)	46, 464
NspI	RCATGY	1 cut(s)	704
NspV	TTCGAA	1 cut(s)	60
PciI	ACATGT	1 cut(s)	700
PciSI	GCTCTTC	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	1 cut(s)	540
PctI	GAATGC	1 cut(s)	720
PdiI	GCCGGC	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	626
PkrI	GCNGC	3 cut(s)	44, 417, 673
PleI	GAGTC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	521
PpuMI	RGGWCCY	1 cut(s)	596
PscI	ACATGT	1 cut(s)	700
PshAI	GACNNNNGTC	1 cut(s)	240
Psp5II	RGGWCCY	1 cut(s)	596
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	6 cut(s)	114, 180, 212, 419, 597, 826
PspPI	GGNCC	4 cut(s)	142, 417, 596, 824
PspPPI	RGGWCCY	1 cut(s)	596
PstI	CTGCAG	1 cut(s)	519
PsuI	RGATCY	2 cut(s)	272, 363
Rsr2I	CGGWCCG	1 cut(s)	142
RsrII	CGGWCCG	1 cut(s)	142
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	3 cut(s)	43, 416, 672
Sau3AI	GATC	3 cut(s)	228, 272, 363
Sau96I	GGNCC	4 cut(s)	142, 417, 596, 824
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	1 cut(s)	110
SexAI	ACCWGGT	1 cut(s)	108
SfaNI	GCATC	4 cut(s)	352, 510, 658, 755
SfcI	CTRYAG	2 cut(s)	432, 515
SfuI	TTCGAA	1 cut(s)	60
SinI	GGWCC	3 cut(s)	142, 596, 824
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	4 cut(s)	194, 545, 678, 819
SsiI	CCGC	4 cut(s)	150, 406, 415, 451
SspI	AATATT	2 cut(s)	801, 838
SspMI	CTAG	5 cut(s)	80, 276, 524, 791, 853
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	2 cut(s)	79, 842
TaaI	ACNGT	2 cut(s)	142, 448
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	60
TasI	AATT	4 cut(s)	194, 545, 678, 819
TauI	GCSGC	1 cut(s)	418
TfiI	GAWTC	1 cut(s)	626
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	2 cut(s)	42, 671
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	5 cut(s)	180, 206, 289, 293, 698
VpaK11BI	GGWCC	3 cut(s)	142, 596, 824
XbaI	TCTAGA	1 cut(s)	275
XceI	RCATGY	1 cut(s)	704
XmaJI	CCTAGG	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	435
XspI	CTAG	5 cut(s)	80, 276, 524, 791, 853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.