Rh7BG374900

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0010573
Physical Location & Seq
Reverse (-)
40325747 .. 40326845
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG374900.1

Sequence Viewer

Length: 849 bp
ATGTCAAGTTCAGTCGTGAGAGAGAGGCAATATATTTGTAGCTGCGCATATCAAGATTTCGGAGCCAACCCTAACCTCCTAGGCGAGTTGCGCTACAACCCTCCAGACCTGGTTCCAATCGTGTTCAAGCTCTTGAAGACGGTCCGAAGCGGTTTGATTGATGATGAAGATGATGAGGAGCCACCAAGTTTGGAATTGGAAGAATGTAGGCTCCTTGATTTAGAAGTGATCAGAGGCGTTGGTCTGTCGCGTCTCAAGCTATCATCTCCAAGATCTAGAAGTGAACTCAAAGAGCGCTTCATTCATATTCTTTCCACAAAACTCCATGTGCCAGAAGAAGAGCATCAAACTATCATTGACCAGATCTTTCAAGAGGTTGATAAGGATTGCCGGCGTTTTCCCCTCCGCCCCTTGCGGCCCCTTATAGTGGCTGTATACAATGTGACTGTGCGGTTGCGATTGCGCCCTCCTCCTCCTCCTCCTCCTCCGGTTGATTTTGATGTTATACTTCATATGCTAGACTCAGACGGCGGCACCGAATTGTTATCCTTGATTACTGATTATGAGGAGGAGGGTTTGGAGAAAGTGGGACCTGATAGCTTGGAAGCTAAGAAACAAGAATCGTGTCCTATTTGTATGGATGACTTTGAGGAAAAGGAGGATGCAGCCCCAACTGCTCGCTTGCCCTGCTTACATTTTTTTCATAGACATTGCATTCTTGGCTGGCTTCACAGAAATCCCTTGTGTCCCTTGTGCCGATGCCCTCTGCGTAAAAAGAGAAAGCTAGAGGAAATATTGTCATCTTCAACTCCGATTGGTCCCTCATCAAATATTCCAAGGCTTAGCTAG

Protein Analysis

282

Amino Acids

32.21

Weight (kDa)

5.48

Isoelectric Point (pI)

69.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 207 - 253 5.6e-08 RING-H2 zinc finger domain
zf-RING_2 PF13639 208 - 253 7.4e-14 Ring finger domain
zf-C3HC4_2 PF13923 209 - 252 1.9e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 209 - 250 2.6e-07 RING-type zinc-finger
zf-C3HC4 PF00097 209 - 252 3.7e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 209 - 239 1e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 46
AccB1I GGYRCC 1 cut(s) 533
AccI GTMKAC 1 cut(s) 435
AccII CGCG 1 cut(s) 250
AciI CCGC 5 cut(s) 150, 406, 415, 451, 531
AfeI AGCGCT 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 427
AgsI TTSAA 4 cut(s) 127, 136, 371, 807
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 7 cut(s) 42, 130, 259, 600, 608, 784, 846
AluI AGCT 7 cut(s) 42, 130, 259, 600, 608, 784, 846
Alw26I GTCTC 1 cut(s) 257
Aor51HI AGCGCT 1 cut(s) 296
AoxI GGCC 1 cut(s) 416
ApeKI GCWGC 2 cut(s) 42, 665
AspA2I CCTAGG 1 cut(s) 79
AspLEI GCGC 4 cut(s) 47, 93, 297, 465
AspS9I GGNCC 4 cut(s) 142, 417, 590, 818
AvaII GGWCC 3 cut(s) 142, 590, 818
AvrII CCTAGG 1 cut(s) 79
BanI GGYRCC 1 cut(s) 533
BbsI GAAGAC 1 cut(s) 143
BbvI GCAGC 2 cut(s) 29, 677
BceAI ACGGC 1 cut(s) 544
BciT130I CCWGG 1 cut(s) 110
BclI TGATCA 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 5 cut(s) 80, 276, 518, 785, 847
BfoI RGCGCY 1 cut(s) 298
BglII AGATCT 2 cut(s) 272, 363
BisI GCNGC 4 cut(s) 43, 416, 532, 666
BlnI CCTAGG 1 cut(s) 79
BlpI GCTNAGC 1 cut(s) 842
BlsI GCNGC 4 cut(s) 44, 417, 533, 667
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 3 cut(s) 142, 590, 818
BmgT120I GGNCC 4 cut(s) 142, 417, 590, 818
BmiI GGNNCC 8 cut(s) 64, 114, 180, 212, 419, 535, 591, 820
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 3 cut(s) 352, 652, 749
BpiI GAAGAC 1 cut(s) 143
BpmI CTGGAG 1 cut(s) 87
Bpu1102I GCTNAGC 1 cut(s) 842
BpuEI CTTGAG 1 cut(s) 239
BsaJI CCNNGG 2 cut(s) 79, 836
BsaWI WCCGGW 1 cut(s) 487
Bsc4I CCNNNNNNNGG 1 cut(s) 427
Bse118I RCCGGY 1 cut(s) 390
Bse3DI GCAATG 1 cut(s) 709
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 2 cut(s) 79, 836
BseGI GGATG 2 cut(s) 646, 667
BseLI CCNNNNNNNGG 1 cut(s) 427
BseMI GCAATG 1 cut(s) 709
BseMII CTCAG 1 cut(s) 537
BseRI GAGGAG 9 cut(s) 191, 459, 462, 465, 468, 471, 474, 581, 584
BseXI GCAGC 2 cut(s) 29, 677
Bsh1236I CGCG 1 cut(s) 250
BshFI GGCC 1 cut(s) 418
BshNI GGYRCC 1 cut(s) 533
BsiSI CCGG 2 cut(s) 391, 488
BslFI GGGAC 3 cut(s) 603, 732, 804
BslI CCNNNNNNNGG 1 cut(s) 427
BsmAI GTCTC 1 cut(s) 257
BsmBI CGTCTC 1 cut(s) 257
BsmFI GGGAC 3 cut(s) 603, 732, 804
BsmI GAATGC 1 cut(s) 714
BsnI GGCC 1 cut(s) 418
Bsp143I GATC 3 cut(s) 228, 272, 363
Bsp1720I GCTNAGC 1 cut(s) 842
BspACI CCGC 5 cut(s) 150, 406, 415, 451, 531
BspANI GGCC 1 cut(s) 418
BspCNI CTCAG 1 cut(s) 536
BspFNI CGCG 1 cut(s) 250
BspLI GGNNCC 8 cut(s) 64, 114, 180, 212, 419, 535, 591, 820
BspQI GCTCTTC 1 cut(s) 333
BspT107I GGYRCC 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 709
BsrFI RCCGGY 1 cut(s) 390
BssAI RCCGGY 1 cut(s) 390
BssECI CCNNGG 2 cut(s) 79, 836
BssMI GATC 3 cut(s) 228, 272, 363
BssNAI GTATAC 1 cut(s) 436
BssT1I CCWWGG 2 cut(s) 79, 836
Bst1107I GTATAC 1 cut(s) 436
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 2 cut(s) 142, 448
Bst6I CTCTTC 1 cut(s) 333
BstC8I GCNNGC 4 cut(s) 392, 679, 683, 725
BstDEI CTNAG 3 cut(s) 523, 609, 842
BstF5I GGATG 2 cut(s) 646, 667
BstFNI CGCG 1 cut(s) 250
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 4 cut(s) 47, 93, 297, 465
BstKTI GATC 3 cut(s) 231, 275, 366
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 3 cut(s) 228, 272, 363
BstMWI GCNNNNNNNGC 5 cut(s) 90, 256, 674, 687, 720
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 108
BstUI CGCG 1 cut(s) 250
BstV1I GCAGC 2 cut(s) 29, 677
BstV2I GAAGAC 1 cut(s) 143
BstX2I RGATCY 2 cut(s) 272, 363
BstYI RGATCY 2 cut(s) 272, 363
BstZ17I GTATAC 1 cut(s) 436
BsuRI GGCC 1 cut(s) 418
BtsCI GGATG 2 cut(s) 646, 667
Cac8I GCNNGC 4 cut(s) 392, 679, 683, 725
CfoI GCGC 4 cut(s) 47, 93, 297, 465
Cfr10I RCCGGY 1 cut(s) 390
Cfr13I GGNCC 4 cut(s) 142, 417, 590, 818
CpoI CGGWCCG 1 cut(s) 142
CseI GACGC 1 cut(s) 239
CsiI ACCWGGT 1 cut(s) 108
CspCI CAANNNNNGTGG 2 cut(s) 171, 206
CspI CGGWCCG 1 cut(s) 142
CviAII CATG 1 cut(s) 326
DdeI CTNAG 3 cut(s) 523, 609, 842
DpnI GATC 3 cut(s) 230, 274, 365
DpnII GATC 3 cut(s) 228, 272, 363
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
EciI GGCGGA 1 cut(s) 395
Eco130I CCWWGG 2 cut(s) 79, 836
Eco47I GGWCC 3 cut(s) 142, 590, 818
Eco47III AGCGCT 1 cut(s) 296
EcoO109I RGGNCCY 1 cut(s) 590
EcoRII CCWGG 1 cut(s) 108
EcoT14I CCWWGG 2 cut(s) 79, 836
ErhI CCWWGG 2 cut(s) 79, 836
Esp3I CGTCTC 1 cut(s) 257
FaeI CATG 1 cut(s) 329
FaqI GGGAC 3 cut(s) 603, 732, 804
FatI CATG 1 cut(s) 325
FauNDI CATATG 1 cut(s) 513
FbaI TGATCA 1 cut(s) 228
FblI GTMKAC 1 cut(s) 435
Fnu4HI GCNGC 4 cut(s) 43, 416, 532, 666
FokI GGATG 2 cut(s) 653, 674
Fsp4HI GCNGC 4 cut(s) 43, 416, 532, 666
FspBI CTAG 5 cut(s) 80, 276, 518, 785, 847
FspI TGCGCA 1 cut(s) 46
GlaI GCGC 4 cut(s) 46, 92, 296, 464
GluI GCNGC 4 cut(s) 43, 416, 532, 666
GsuI CTGGAG 1 cut(s) 87
HaeII RGCGCY 1 cut(s) 298
HaeIII GGCC 1 cut(s) 418
HapII CCGG 2 cut(s) 391, 488
HgaI GACGC 1 cut(s) 239
HhaI GCGC 4 cut(s) 47, 93, 297, 465
Hin1II CATG 1 cut(s) 329
Hin6I GCGC 4 cut(s) 45, 91, 295, 463
HinP1I GCGC 4 cut(s) 45, 91, 295, 463
HinfI GANTC 2 cut(s) 521, 620
HpaII CCGG 2 cut(s) 391, 488
Hpy166II GTNNAC 2 cut(s) 284, 436
Hpy188I TCNGA 5 cut(s) 62, 146, 233, 526, 813
Hpy188III TCNNGA 6 cut(s) 16, 53, 104, 133, 276, 371
Hpy8I GTNNAC 2 cut(s) 284, 436
HpyCH4III ACNGT 2 cut(s) 142, 448
HpyCH4V TGCA 2 cut(s) 665, 714
HpyF10VI GCNNNNNNNGC 5 cut(s) 90, 256, 674, 687, 720
HpyF3I CTNAG 3 cut(s) 523, 609, 842
Hsp92II CATG 1 cut(s) 329
HspAI GCGC 4 cut(s) 45, 91, 295, 463
KroI GCCGGC 1 cut(s) 390
KroNI GCCGGC 1 cut(s) 392
Ksp22I TGATCA 1 cut(s) 228
Kzo9I GATC 3 cut(s) 228, 272, 363
LguI GCTCTTC 1 cut(s) 333
LmnI GCTCC 3 cut(s) 62, 178, 216
Lsp1109I GCAGC 2 cut(s) 29, 677
LweI GCATC 3 cut(s) 352, 652, 749
MabI ACCWGGT 1 cut(s) 108
MaeI CTAG 5 cut(s) 80, 276, 518, 785, 847
MaeIII GTNAC 1 cut(s) 442
MalI GATC 3 cut(s) 230, 274, 365
MboI GATC 3 cut(s) 228, 272, 363
MboII GAAGA 6 cut(s) 148, 179, 212, 347, 350, 795
MflI RGATCY 2 cut(s) 272, 363
MluCI AATT 2 cut(s) 194, 539
MlyI GAGTC 1 cut(s) 515
MroNI GCCGGC 1 cut(s) 390
MspI CCGG 2 cut(s) 391, 488
MspR9I CCNGG 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 714
MvaI CCWGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 250
MwoI GCNNNNNNNGC 5 cut(s) 90, 256, 674, 687, 720
NaeI GCCGGC 1 cut(s) 392
NdeI CATATG 1 cut(s) 513
NdeII GATC 3 cut(s) 228, 272, 363
NgoMIV GCCGGC 1 cut(s) 390
NlaIII CATG 1 cut(s) 329
NlaIV GGNNCC 8 cut(s) 64, 114, 180, 212, 419, 535, 591, 820
NmuCI GTSAC 1 cut(s) 442
NsbI TGCGCA 1 cut(s) 46
PciSI GCTCTTC 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 534
PctI GAATGC 1 cut(s) 714
PdiI GCCGGC 1 cut(s) 392
PfeI GAWTC 1 cut(s) 620
PkrI GCNGC 4 cut(s) 44, 417, 533, 667
PleI GAGTC 1 cut(s) 515
PpsI GAGTC 1 cut(s) 515
PpuMI RGGWCCY 1 cut(s) 590
Psp5II RGGWCCY 1 cut(s) 590
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 8 cut(s) 64, 114, 180, 212, 419, 535, 591, 820
PspPI GGNCC 4 cut(s) 142, 417, 590, 818
PspPPI RGGWCCY 1 cut(s) 590
PsuI RGATCY 2 cut(s) 272, 363
Rsr2I CGGWCCG 1 cut(s) 142
RsrII CGGWCCG 1 cut(s) 142
SapI GCTCTTC 1 cut(s) 333
SatI GCNGC 4 cut(s) 43, 416, 532, 666
Sau3AI GATC 3 cut(s) 228, 272, 363
Sau96I GGNCC 4 cut(s) 142, 417, 590, 818
SchI GAGTC 1 cut(s) 515
ScrFI CCNGG 1 cut(s) 110
SexAI ACCWGGT 1 cut(s) 108
SfaNI GCATC 3 cut(s) 352, 652, 749
SinI GGWCC 3 cut(s) 142, 590, 818
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 2 cut(s) 194, 539
SsiI CCGC 5 cut(s) 150, 406, 415, 451, 531
SspI AATATT 2 cut(s) 795, 832
SspMI CTAG 5 cut(s) 80, 276, 518, 785, 847
StyD4I CCNGG 1 cut(s) 108
StyI CCWWGG 2 cut(s) 79, 836
TaaI ACNGT 2 cut(s) 142, 448
TasI AATT 2 cut(s) 194, 539
TauI GCSGC 2 cut(s) 418, 534
TfiI GAWTC 1 cut(s) 620
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 2 cut(s) 42, 665
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 5 cut(s) 180, 289, 293, 500, 692
VpaK11BI GGWCC 3 cut(s) 142, 590, 818
XbaI TCTAGA 1 cut(s) 275
XmaJI CCTAGG 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 435
XspI CTAG 5 cut(s) 80, 276, 518, 785, 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.