Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010573

Physical Location & Seq

Genomic Coordinates Reverse (-)

15525742 .. 15526845

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG105400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTCAAGTTCAGTTGTGAGAGAGAGGCAATATATTTGTAGCTGCGCATATCAAGATTTCGAAGCCAACCCTGACCTCCTAGGCGAGTTGCCCTACAACCCTCCAGACCTGGTTCCAATCGTGTTCAAGCTCTTGAAGACGGTCCGAAGCGGTTTGATTGATGATGAAGATGATGAGGAGCCACCAAGTTTGGAATTGGAAGAATATAGGCTCCTTCATGTAGAAGTGATCAGGGACGTTGGTCTGTCGCGTCTCAAGCTATCATCTCCAAGATCTAGAAGTGAACTCAAAGAGCGCTTCATTCATATTCTTTCCACAAAACTCCATGTCCCAGAAGAAGAGCATCAAACTATCATTGACCAGATCTTTCAAGAGGTTGATAAGGATTGCCGGCGTTTTCCTCTCGGCCCATTGCGGCCCCTTAAAGTGGCTGTAGACAATGTGACTGTGCGGTTGCGATTGCGATTGCGCCCTCCTCCTCCTCCTCCTCCGGTTGATTTTGATGTTTTCCTTCAGATGCTAGACTCAGACGACGGCAACGAATTGTTATCCTTGATTACTGATTATGAGGAGGAGGGTTTGGAGAAAGTGGGACCTGATAGCTTGGAAGCTAAGAAACAAGAATCATGTCCTATTTGTATGGATGACTTTGAGGAAAAGGAGGATGCAGCCCCAATTGCTCGCTTGCCCTGCTTACATGTTTTTCATAGACATTGCATTCTTTGCTGGCTTCACAGAAATCCCTTGTGTCCCTTGTGCCGATGCCCTCTGCGTAAAAAGAGAAAGCTAGAGGAAATATTGTCATCTTCAACTCCAATTGGTCCCTCATCAAATATTCCAAGGCTTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

283

Amino Acids

32.5

Weight (kDa)

5.17

Isoelectric Point (pI)

65.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	208 - 254	7.7e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	209 - 254	7.7e-13	Ring finger domain
zf-C3HC4_2	PF13923	210 - 253	5.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	210 - 240	2.2e-07	RING-like zinc finger
zf-RING_UBOX	PF13445	210 - 251	3.9e-07	RING-type zinc-finger
zf-C3HC4	PF00097	210 - 253	3.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010573)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32280
rosa_laevigata	RLG00000001669 RLG00000001674 RLG00000031849
rosa_multiflora	Rmu_co8422033.1_g000001 Rmu_sc0000356.1_g000014
rosa_roxburghii	Rroxscaffold_3G00232350 Rroxscaffold_3G00232370
rosa_rugosa	Rorug04G0458100
rosa_samantha	Rh5AG089800 Rh5BG085300 Rh5CG099200 Rh5DG085100 Rh6AG105400 Rh7AG389100 Rh7AG389300 Rh7BG374900 Rh7BG375200 Rh7CG408400 Rh7DG387100
rosa_wichuraiana	Rw7G032630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	46
AccI	GTMKAC	1 cut(s)	435
AccII	CGCG	1 cut(s)	250
AciI	CCGC	3 cut(s)	150, 415, 451
AcuI	CTGAAG	1 cut(s)	497
AfeI	AGCGCT	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	427
AflIII	ACRYGT	1 cut(s)	697
AgsI	TTSAA	4 cut(s)	127, 136, 371, 810
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	7 cut(s)	42, 130, 259, 603, 611, 787, 849
AluI	AGCT	7 cut(s)	42, 130, 259, 603, 611, 787, 849
Alw26I	GTCTC	1 cut(s)	257
Aor51HI	AGCGCT	1 cut(s)	296
AoxI	GGCC	2 cut(s)	406, 416
ApeKI	GCWGC	2 cut(s)	42, 668
AspA2I	CCTAGG	1 cut(s)	79
AspLEI	GCGC	3 cut(s)	47, 297, 471
AspS9I	GGNCC	5 cut(s)	142, 407, 417, 593, 821
AsuII	TTCGAA	1 cut(s)	60
AvaII	GGWCC	3 cut(s)	142, 593, 821
AvrII	CCTAGG	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	29, 680
BceAI	ACGGC	1 cut(s)	550
BciT130I	CCWGG	1 cut(s)	110
BclI	TGATCA	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	5 cut(s)	80, 276, 521, 788, 850
BfmI	CTRYAG	1 cut(s)	432
BfoI	RGCGCY	1 cut(s)	298
BglII	AGATCT	2 cut(s)	272, 363
BisI	GCNGC	3 cut(s)	43, 416, 669
BlnI	CCTAGG	1 cut(s)	79
BlpI	GCTNAGC	1 cut(s)	845
BlsI	GCNGC	3 cut(s)	44, 417, 670
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	3 cut(s)	142, 593, 821
BmgT120I	GGNCC	5 cut(s)	142, 407, 417, 593, 821
BmiI	GGNNCC	6 cut(s)	114, 180, 212, 419, 594, 823
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	4 cut(s)	352, 507, 655, 752
BoxI	GACNNNNGTC	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	143
BpmI	CTGGAG	1 cut(s)	87
Bpu1102I	GCTNAGC	1 cut(s)	845
Bpu14I	TTCGAA	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	79, 839
BsaWI	WCCGGW	1 cut(s)	490
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse118I	RCCGGY	1 cut(s)	390
Bse3DI	GCAATG	2 cut(s)	410, 712
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	79, 839
BseGI	GGATG	2 cut(s)	649, 670
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMI	GCAATG	2 cut(s)	410, 712
BseMII	CTCAG	1 cut(s)	540
BseRI	GAGGAG	8 cut(s)	191, 465, 468, 471, 474, 477, 584, 587
BseXI	GCAGC	2 cut(s)	29, 680
Bsh1236I	CGCG	1 cut(s)	250
BshFI	GGCC	2 cut(s)	408, 418
BsiSI	CCGG	2 cut(s)	391, 491
BslFI	GGGAC	5 cut(s)	248, 314, 606, 735, 807
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	1 cut(s)	257
BsmBI	CGTCTC	1 cut(s)	257
BsmFI	GGGAC	5 cut(s)	248, 314, 606, 735, 807
BsmI	GAATGC	1 cut(s)	717
BsnI	GGCC	2 cut(s)	408, 418
Bsp119I	TTCGAA	1 cut(s)	60
Bsp143I	GATC	3 cut(s)	228, 272, 363
Bsp1720I	GCTNAGC	1 cut(s)	845
BspACI	CCGC	3 cut(s)	150, 415, 451
BspANI	GGCC	2 cut(s)	408, 418
BspCNI	CTCAG	1 cut(s)	539
BspFNI	CGCG	1 cut(s)	250
BspLI	GGNNCC	6 cut(s)	114, 180, 212, 419, 594, 823
BspQI	GCTCTTC	1 cut(s)	333
BspT104I	TTCGAA	1 cut(s)	60
BsrDI	GCAATG	2 cut(s)	410, 712
BsrFI	RCCGGY	1 cut(s)	390
BssAI	RCCGGY	1 cut(s)	390
BssECI	CCNNGG	2 cut(s)	79, 839
BssMI	GATC	3 cut(s)	228, 272, 363
BssT1I	CCWWGG	2 cut(s)	79, 839
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	2 cut(s)	142, 448
Bst6I	CTCTTC	1 cut(s)	333
BstAPI	GCANNNNNTGC	1 cut(s)	723
BstBI	TTCGAA	1 cut(s)	60
BstC8I	GCNNGC	4 cut(s)	392, 682, 686, 728
BstDEI	CTNAG	3 cut(s)	526, 612, 845
BstF5I	GGATG	2 cut(s)	649, 670
BstFNI	CGCG	1 cut(s)	250
BstH2I	RGCGCY	1 cut(s)	298
BstHHI	GCGC	3 cut(s)	47, 297, 471
BstKTI	GATC	3 cut(s)	231, 275, 366
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	3 cut(s)	228, 272, 363
BstMWI	GCNNNNNNNGC	4 cut(s)	256, 677, 690, 723
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	701
BstPAI	GACNNNNGTC	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	432
BstUI	CGCG	1 cut(s)	250
BstV1I	GCAGC	2 cut(s)	29, 680
BstV2I	GAAGAC	1 cut(s)	143
BstX2I	RGATCY	2 cut(s)	272, 363
BstYI	RGATCY	2 cut(s)	272, 363
BsuRI	GGCC	2 cut(s)	408, 418
BtsCI	GGATG	2 cut(s)	649, 670
Cac8I	GCNNGC	4 cut(s)	392, 682, 686, 728
CfoI	GCGC	3 cut(s)	47, 297, 471
Cfr10I	RCCGGY	1 cut(s)	390
Cfr13I	GGNCC	5 cut(s)	142, 407, 417, 593, 821
CpoI	CGGWCCG	1 cut(s)	142
CseI	GACGC	1 cut(s)	239
CsiI	ACCWGGT	1 cut(s)	108
CspCI	CAANNNNNGTGG	2 cut(s)	171, 206
CspI	CGGWCCG	1 cut(s)	142
CviAII	CATG	4 cut(s)	218, 326, 627, 698
DdeI	CTNAG	3 cut(s)	526, 612, 845
DpnI	GATC	3 cut(s)	230, 274, 365
DpnII	GATC	3 cut(s)	228, 272, 363
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco130I	CCWWGG	2 cut(s)	79, 839
Eco47I	GGWCC	3 cut(s)	142, 593, 821
Eco47III	AGCGCT	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	497
EcoO109I	RGGNCCY	1 cut(s)	593
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	2 cut(s)	79, 839
ErhI	CCWWGG	2 cut(s)	79, 839
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	4 cut(s)	221, 329, 630, 701
FaqI	GGGAC	5 cut(s)	248, 314, 606, 735, 807
FatI	CATG	4 cut(s)	217, 325, 626, 697
FbaI	TGATCA	1 cut(s)	228
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	3 cut(s)	43, 416, 669
FokI	GGATG	2 cut(s)	656, 677
Fsp4HI	GCNGC	3 cut(s)	43, 416, 669
FspBI	CTAG	5 cut(s)	80, 276, 521, 788, 850
FspI	TGCGCA	1 cut(s)	46
GlaI	GCGC	3 cut(s)	46, 296, 470
GluI	GCNGC	3 cut(s)	43, 416, 669
GsuI	CTGGAG	1 cut(s)	87
HaeII	RGCGCY	1 cut(s)	298
HaeIII	GGCC	2 cut(s)	408, 418
HapII	CCGG	2 cut(s)	391, 491
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	3 cut(s)	47, 297, 471
Hin1II	CATG	4 cut(s)	221, 329, 630, 701
Hin6I	GCGC	3 cut(s)	45, 295, 469
HinP1I	GCGC	3 cut(s)	45, 295, 469
HinfI	GANTC	2 cut(s)	524, 623
HpaII	CCGG	2 cut(s)	391, 491
Hpy166II	GTNNAC	2 cut(s)	284, 436
Hpy188I	TCNGA	3 cut(s)	146, 516, 529
Hpy188III	TCNNGA	5 cut(s)	53, 104, 133, 276, 371
Hpy8I	GTNNAC	2 cut(s)	284, 436
Hpy99I	CGWCG	1 cut(s)	536
HpyAV	CCTTC	2 cut(s)	224, 521
HpyCH4III	ACNGT	2 cut(s)	142, 448
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	2 cut(s)	668, 717
HpyF10VI	GCNNNNNNNGC	4 cut(s)	256, 677, 690, 723
HpyF3I	CTNAG	3 cut(s)	526, 612, 845
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	4 cut(s)	221, 329, 630, 701
HspAI	GCGC	3 cut(s)	45, 295, 469
KroI	GCCGGC	1 cut(s)	390
KroNI	GCCGGC	1 cut(s)	392
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	228, 272, 363
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	2 cut(s)	178, 216
Lsp1109I	GCAGC	2 cut(s)	29, 680
LweI	GCATC	4 cut(s)	352, 507, 655, 752
MabI	ACCWGGT	1 cut(s)	108
MaeI	CTAG	5 cut(s)	80, 276, 521, 788, 850
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	3 cut(s)	230, 274, 365
MboI	GATC	3 cut(s)	228, 272, 363
MboII	GAAGA	6 cut(s)	148, 179, 212, 347, 350, 798
MfeI	CAATTG	2 cut(s)	675, 816
MflI	RGATCY	2 cut(s)	272, 363
MluCI	AATT	4 cut(s)	194, 542, 675, 816
MlyI	GAGTC	1 cut(s)	518
MroNI	GCCGGC	1 cut(s)	390
MseI	TTAA	1 cut(s)	423
MspI	CCGG	2 cut(s)	391, 491
MspR9I	CCNGG	1 cut(s)	110
MunI	CAATTG	2 cut(s)	675, 816
Mva1269I	GAATGC	1 cut(s)	717
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	250
MwoI	GCNNNNNNNGC	4 cut(s)	256, 677, 690, 723
NaeI	GCCGGC	1 cut(s)	392
NdeII	GATC	3 cut(s)	228, 272, 363
NgoMIV	GCCGGC	1 cut(s)	390
NlaIII	CATG	4 cut(s)	221, 329, 630, 701
NlaIV	GGNNCC	6 cut(s)	114, 180, 212, 419, 594, 823
NmeAIII	GCCGAG	1 cut(s)	384
NmuCI	GTSAC	1 cut(s)	442
NsbI	TGCGCA	1 cut(s)	46
NspI	RCATGY	1 cut(s)	701
NspV	TTCGAA	1 cut(s)	60
PciI	ACATGT	1 cut(s)	697
PciSI	GCTCTTC	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	1 cut(s)	537
PctI	GAATGC	1 cut(s)	717
PdiI	GCCGGC	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	623
PkrI	GCNGC	3 cut(s)	44, 417, 670
PleI	GAGTC	1 cut(s)	518
PpsI	GAGTC	1 cut(s)	518
PpuMI	RGGWCCY	1 cut(s)	593
PscI	ACATGT	1 cut(s)	697
PshAI	GACNNNNGTC	1 cut(s)	240
Psp5II	RGGWCCY	1 cut(s)	593
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	6 cut(s)	114, 180, 212, 419, 594, 823
PspPI	GGNCC	5 cut(s)	142, 407, 417, 593, 821
PspPPI	RGGWCCY	1 cut(s)	593
PsuI	RGATCY	2 cut(s)	272, 363
Rsr2I	CGGWCCG	1 cut(s)	142
RsrII	CGGWCCG	1 cut(s)	142
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	3 cut(s)	43, 416, 669
Sau3AI	GATC	3 cut(s)	228, 272, 363
Sau96I	GGNCC	5 cut(s)	142, 407, 417, 593, 821
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	1 cut(s)	110
SexAI	ACCWGGT	1 cut(s)	108
SfaNI	GCATC	4 cut(s)	352, 507, 655, 752
SfcI	CTRYAG	1 cut(s)	432
SfuI	TTCGAA	1 cut(s)	60
SinI	GGWCC	3 cut(s)	142, 593, 821
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	4 cut(s)	194, 542, 675, 816
SsiI	CCGC	3 cut(s)	150, 415, 451
SspI	AATATT	2 cut(s)	798, 835
SspMI	CTAG	5 cut(s)	80, 276, 521, 788, 850
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	2 cut(s)	79, 839
TaaI	ACNGT	2 cut(s)	142, 448
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	60
TasI	AATT	4 cut(s)	194, 542, 675, 816
TauI	GCSGC	1 cut(s)	418
TfiI	GAWTC	1 cut(s)	623
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	2 cut(s)	42, 668
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	5 cut(s)	180, 206, 289, 293, 695
VpaK11BI	GGWCC	3 cut(s)	142, 593, 821
XbaI	TCTAGA	1 cut(s)	275
XceI	RCATGY	1 cut(s)	701
XmaJI	CCTAGG	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	435
XspI	CTAG	5 cut(s)	80, 276, 521, 788, 850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.