Rorug04G0458100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0010573
Physical Location & Seq
Reverse (-)
61109445 .. 61110554
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0458100.1

Sequence Viewer

Length: 303 bp
ATGCTTGATTTTGCGCATTGCCGGAACCAGATTGAACCAGATGGACTTGTCCAGTGCCGAGAGGATTTCGTTTCCGACGAGGAGGTACCGGATCAGAGTATGTGGGTAGAAGGGGACTACATTGGCGTGGACCCATTGGTCCGCGAGGGTTTGATTGGAGGAATTGTTGTTGATGAGCTCATTGGGTACCATAATCGAGACTTGGAGGTCTGTGTTTTGGAGAGCCTTGAGGATTTTGGGGTTGGCATCGTAGATTTTGACTCGCTTAGCTTTGAGGGTTTGGATGAGCTTTACAGATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.34

Weight (kDa)

4.05

Isoelectric Point (pI)

21.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 137, 206
Acc16I TGCGCA 1 cut(s) 15
Acc65I GGTACC 2 cut(s) 85, 186
AccB1I GGYRCC 2 cut(s) 85, 186
AccII CGCG 1 cut(s) 144
AciI CCGC 1 cut(s) 142
AclWI GGATC 1 cut(s) 99
AfaI GTAC 2 cut(s) 87, 188
AgsI TTSAA 1 cut(s) 35
AluBI AGCT 3 cut(s) 178, 270, 289
AluI AGCT 3 cut(s) 178, 270, 289
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 1 cut(s) 99
AlwNI CAGNNNCTG 1 cut(s) 300
Asp718I GGTACC 2 cut(s) 85, 186
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 2 cut(s) 130, 139
AvaII GGWCC 2 cut(s) 130, 139
BanI GGYRCC 2 cut(s) 85, 186
BanII GRGCYC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 180
BccI CCATC 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 192
BlpI GCTNAGC 1 cut(s) 266
Bme18I GGWCC 2 cut(s) 130, 139
BmgT120I GGNCC 2 cut(s) 130, 139
BmiI GGNNCC 4 cut(s) 26, 87, 132, 188
BmsI GCATC 1 cut(s) 255
Bpu1102I GCTNAGC 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 248
BsaWI WCCGGW 1 cut(s) 88
BsaXI ACNNNNNCTCC 2 cut(s) 150, 180
Bse1I ACTGG 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 16
BseGI GGATG 1 cut(s) 289
BseMI GCAATG 1 cut(s) 16
BseNI ACTGG 1 cut(s) 52
BseRI GAGGAG 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 144
BshNI GGYRCC 2 cut(s) 85, 186
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 2 cut(s) 22, 89
BslFI GGGAC 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 1 cut(s) 91
Bsp1720I GCTNAGC 1 cut(s) 266
BspACI CCGC 1 cut(s) 142
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 4 cut(s) 26, 87, 132, 188
BspPI GGATC 1 cut(s) 99
BspT107I GGYRCC 2 cut(s) 85, 186
BsrDI GCAATG 1 cut(s) 16
BsrI ACTGG 1 cut(s) 52
BssMI GATC 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 266
BstF5I GGATG 1 cut(s) 289
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 1 cut(s) 94
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 1 cut(s) 91
BstUI CGCG 1 cut(s) 144
BtsCI GGATG 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 59
CaiI CAGNNNCTG 1 cut(s) 300
CfoI GCGC 1 cut(s) 16
Cfr13I GGNCC 2 cut(s) 130, 139
Csp6I GTAC 2 cut(s) 86, 187
CviJI RGCY 4 cut(s) 178, 225, 270, 289
CviKI_1 RGCY 4 cut(s) 178, 225, 270, 289
CviQI GTAC 2 cut(s) 86, 187
DdeI CTNAG 1 cut(s) 266
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
DrdI GACNNNNNNGTC 2 cut(s) 137, 206
DseDI GACNNNNNNGTC 2 cut(s) 137, 206
Ecl136II GAGCTC 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 180
Eco47I GGWCC 2 cut(s) 130, 139
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 180
FaiI YATR 2 cut(s) 101, 192
FaqI GGGAC 1 cut(s) 128
FokI GGATG 1 cut(s) 296
FriOI GRGCYC 1 cut(s) 180
FspI TGCGCA 1 cut(s) 15
GlaI GCGC 1 cut(s) 15
HapII CCGG 2 cut(s) 22, 89
HhaI GCGC 1 cut(s) 16
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HinfI GANTC 2 cut(s) 260, 297
HpaII CCGG 2 cut(s) 22, 89
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 3 cut(s) 76, 96, 302
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 266
HspAI GCGC 1 cut(s) 14
KpnI GGTACC 2 cut(s) 89, 190
Kzo9I GATC 1 cut(s) 91
LpnPI CCDG 5 cut(s) 35, 41, 51, 65, 102
LweI GCATC 1 cut(s) 255
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 1 cut(s) 162
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 8 cut(s) 55, 73, 76, 139, 152, 199, 223, 268
MslI CAYNNNNRTG 1 cut(s) 125
MspI CCGG 2 cut(s) 22, 89
MvnI CGCG 1 cut(s) 144
NdeII GATC 1 cut(s) 91
NlaIV GGNNCC 4 cut(s) 26, 87, 132, 188
NmeAIII GCCGAG 1 cut(s) 83
NsbI TGCGCA 1 cut(s) 15
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PfeI GAWTC 1 cut(s) 297
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
Psp124BI GAGCTC 1 cut(s) 180
PspN4I GGNNCC 4 cut(s) 26, 87, 132, 188
PspPI GGNCC 2 cut(s) 130, 139
PstNI CAGNNNCTG 1 cut(s) 300
RsaI GTAC 2 cut(s) 87, 188
RsaNI GTAC 2 cut(s) 86, 187
RseI CAYNNNNRTG 1 cut(s) 125
SacI GAGCTC 1 cut(s) 180
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 2 cut(s) 130, 139
SchI GAGTC 1 cut(s) 254
SduI GDGCHC 1 cut(s) 180
SetI ASST 5 cut(s) 87, 180, 210, 272, 291
SfaNI GCATC 1 cut(s) 255
SinI GGWCC 2 cut(s) 130, 139
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 1 cut(s) 162
SsiI CCGC 1 cut(s) 142
SstI GAGCTC 1 cut(s) 180
TaqI TCGA 1 cut(s) 196
TasI AATT 1 cut(s) 162
TfiI GAWTC 1 cut(s) 297
TscAI CASTG 1 cut(s) 59
TspRI CASTG 1 cut(s) 59
VpaK11BI GGWCC 2 cut(s) 130, 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.