Rw7G032630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0010573
Physical Location & Seq
Reverse (-)
47499680 .. 47501001
1322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G032630.1

Sequence Viewer

Length: 558 bp
ATGTCAAGTTCAGTTGTGAGAGAGAGGCAATATATTTGTAGCTGCGCATATCAAGATTTCGAAGACAACCCTGACCTCGTAGGCGAGTTGCCCTACAACCCTCCAGACCTGGTTCCAATCGTGTTCAAGCTCTTGAAGACGGTCCGAAGCGGTTTGATTGATGATGAAGATGATGAGGAGCCACCAAGTTTGGAATTGGAAGAATATAGGCTCCTTCATGTAGAAGTGATCAGGGACGTTGGTCTGTCGCGTCTCAAGCTATCATCTCCAAGATCTAGAAGTGAACTCAAAGAGCGCTTCATTCATATTCTTTCCACAAAACTCCATGTCCCAGAAGAAGAGCATCAAACTATCATTGACCAGATCTTTCAAGAGGTTGATAAGGATTGCCGGCGTTTTCCTCTCCGCCCATTGCGGCCCCTTAAAGTGGCTGTAGACAATGTGACTGTGCGGTTGCGATTGCGCACTCCTCCTCCTCCTCCTCCTCCTCCGATGCTAGACTCAGACGACGGCAACGAATTTGATCTACAAGTGTCCGTGGAGTTGAATATAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

21.36

Weight (kDa)

4.79

Isoelectric Point (pI)

64.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 46, 464
AccI GTMKAC 1 cut(s) 435
AccII CGCG 1 cut(s) 250
AciI CCGC 4 cut(s) 150, 406, 415, 451
AcsI RAATTY 1 cut(s) 518
AfeI AGCGCT 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 427
AgsI TTSAA 4 cut(s) 127, 136, 371, 547
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 3 cut(s) 42, 130, 259
AluI AGCT 3 cut(s) 42, 130, 259
Alw26I GTCTC 1 cut(s) 257
Aor51HI AGCGCT 1 cut(s) 296
AoxI GGCC 1 cut(s) 416
ApeKI GCWGC 1 cut(s) 42
ApoI RAATTY 1 cut(s) 518
AspLEI GCGC 3 cut(s) 47, 297, 465
AspS9I GGNCC 2 cut(s) 142, 417
AsuII TTCGAA 1 cut(s) 60
AvaII GGWCC 1 cut(s) 142
BbsI GAAGAC 2 cut(s) 69, 143
BbvI GCAGC 1 cut(s) 29
BceAI ACGGC 1 cut(s) 526
BciT130I CCWGG 1 cut(s) 110
BclI TGATCA 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 2 cut(s) 276, 497
BfmI CTRYAG 1 cut(s) 432
BfoI RGCGCY 1 cut(s) 298
BglII AGATCT 2 cut(s) 272, 363
BisI GCNGC 2 cut(s) 43, 416
BlsI GCNGC 2 cut(s) 44, 417
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 2 cut(s) 142, 417
BmiI GGNNCC 4 cut(s) 114, 180, 212, 419
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 2 cut(s) 352, 483
BoxI GACNNNNGTC 1 cut(s) 240
BpiI GAAGAC 2 cut(s) 69, 143
BpmI CTGGAG 1 cut(s) 87
Bpu14I TTCGAA 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 537
BsaXI ACNNNNNCTCC 2 cut(s) 457, 487
Bsc4I CCNNNNNNNGG 1 cut(s) 427
Bse118I RCCGGY 1 cut(s) 390
Bse3DI GCAATG 1 cut(s) 410
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 537
BseLI CCNNNNNNNGG 1 cut(s) 427
BseMI GCAATG 1 cut(s) 410
BseMII CTCAG 1 cut(s) 516
BseRI GAGGAG 8 cut(s) 191, 459, 462, 465, 468, 471, 474, 477
BseXI GCAGC 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 250
BshFI GGCC 1 cut(s) 418
BsiSI CCGG 1 cut(s) 391
BslFI GGGAC 2 cut(s) 248, 314
BslI CCNNNNNNNGG 1 cut(s) 427
BsmAI GTCTC 1 cut(s) 257
BsmBI CGTCTC 1 cut(s) 257
BsmFI GGGAC 2 cut(s) 248, 314
BsnI GGCC 1 cut(s) 418
Bsp119I TTCGAA 1 cut(s) 60
Bsp143I GATC 4 cut(s) 228, 272, 363, 523
BspACI CCGC 4 cut(s) 150, 406, 415, 451
BspANI GGCC 1 cut(s) 418
BspCNI CTCAG 1 cut(s) 515
BspFNI CGCG 1 cut(s) 250
BspLI GGNNCC 4 cut(s) 114, 180, 212, 419
BspQI GCTCTTC 1 cut(s) 333
BspT104I TTCGAA 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 410
BsrFI RCCGGY 1 cut(s) 390
BssAI RCCGGY 1 cut(s) 390
BssECI CCNNGG 1 cut(s) 537
BssMI GATC 4 cut(s) 228, 272, 363, 523
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 2 cut(s) 142, 448
Bst6I CTCTTC 1 cut(s) 333
BstBI TTCGAA 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 392
BstDEI CTNAG 1 cut(s) 502
BstDSI CCRYGG 1 cut(s) 537
BstFNI CGCG 1 cut(s) 250
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 3 cut(s) 47, 297, 465
BstKTI GATC 4 cut(s) 231, 275, 366, 526
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 4 cut(s) 228, 272, 363, 523
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstNI CCWGG 1 cut(s) 110
BstPAI GACNNNNGTC 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 432
BstUI CGCG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 29
BstV2I GAAGAC 2 cut(s) 69, 143
BstX2I RGATCY 2 cut(s) 272, 363
BstYI RGATCY 2 cut(s) 272, 363
BsuRI GGCC 1 cut(s) 418
BtgI CCRYGG 1 cut(s) 537
Cac8I GCNNGC 1 cut(s) 392
CfoI GCGC 3 cut(s) 47, 297, 465
Cfr10I RCCGGY 1 cut(s) 390
Cfr13I GGNCC 2 cut(s) 142, 417
CpoI CGGWCCG 1 cut(s) 142
CseI GACGC 1 cut(s) 239
CsiI ACCWGGT 1 cut(s) 108
CspCI CAANNNNNGTGG 2 cut(s) 171, 206
CspI CGGWCCG 1 cut(s) 142
CviAII CATG 2 cut(s) 218, 326
CviJI RGCY 7 cut(s) 42, 130, 181, 211, 259, 418, 431
CviKI_1 RGCY 7 cut(s) 42, 130, 181, 211, 259, 418, 431
DdeI CTNAG 1 cut(s) 502
DpnI GATC 4 cut(s) 230, 274, 365, 525
DpnII GATC 4 cut(s) 228, 272, 363, 523
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
EciI GGCGGA 1 cut(s) 395
Eco47I GGWCC 1 cut(s) 142
Eco47III AGCGCT 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 257
FaeI CATG 2 cut(s) 221, 329
FaiI YATR 7 cut(s) 33, 49, 207, 219, 306, 327, 551
FaqI GGGAC 2 cut(s) 248, 314
FatI CATG 2 cut(s) 217, 325
FbaI TGATCA 1 cut(s) 228
FblI GTMKAC 1 cut(s) 435
Fnu4HI GCNGC 2 cut(s) 43, 416
Fsp4HI GCNGC 2 cut(s) 43, 416
FspBI CTAG 2 cut(s) 276, 497
FspI TGCGCA 2 cut(s) 46, 464
GlaI GCGC 3 cut(s) 46, 296, 464
GluI GCNGC 2 cut(s) 43, 416
GsuI CTGGAG 1 cut(s) 87
HaeII RGCGCY 1 cut(s) 298
HaeIII GGCC 1 cut(s) 418
HapII CCGG 1 cut(s) 391
HgaI GACGC 1 cut(s) 239
HhaI GCGC 3 cut(s) 47, 297, 465
Hin1II CATG 2 cut(s) 221, 329
Hin6I GCGC 3 cut(s) 45, 295, 463
HinP1I GCGC 3 cut(s) 45, 295, 463
HinfI GANTC 1 cut(s) 500
HpaII CCGG 1 cut(s) 391
Hpy166II GTNNAC 2 cut(s) 284, 436
Hpy188I TCNGA 3 cut(s) 146, 492, 505
Hpy188III TCNNGA 5 cut(s) 53, 104, 133, 276, 371
Hpy8I GTNNAC 2 cut(s) 284, 436
Hpy99I CGWCG 1 cut(s) 512
HpyAV CCTTC 1 cut(s) 224
HpyCH4III ACNGT 2 cut(s) 142, 448
HpyCH4IV ACGT 1 cut(s) 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpyF3I CTNAG 1 cut(s) 502
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 2 cut(s) 221, 329
HspAI GCGC 3 cut(s) 45, 295, 463
KroI GCCGGC 1 cut(s) 390
KroNI GCCGGC 1 cut(s) 392
Ksp22I TGATCA 1 cut(s) 228
Kzo9I GATC 4 cut(s) 228, 272, 363, 523
LguI GCTCTTC 1 cut(s) 333
LmnI GCTCC 2 cut(s) 178, 216
LpnPI CCDG 8 cut(s) 84, 95, 117, 122, 217, 345, 374, 404
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 2 cut(s) 352, 483
MabI ACCWGGT 1 cut(s) 108
MaeI CTAG 2 cut(s) 276, 497
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 442
MalI GATC 4 cut(s) 230, 274, 365, 525
MboI GATC 4 cut(s) 228, 272, 363, 523
MboII GAAGA 6 cut(s) 74, 148, 179, 212, 347, 350
MflI RGATCY 2 cut(s) 272, 363
MluCI AATT 2 cut(s) 194, 518
MlyI GAGTC 1 cut(s) 494
MroNI GCCGGC 1 cut(s) 390
MseI TTAA 2 cut(s) 423, 556
MspI CCGG 1 cut(s) 391
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 250
MwoI GCNNNNNNNGC 1 cut(s) 256
NaeI GCCGGC 1 cut(s) 392
NdeII GATC 4 cut(s) 228, 272, 363, 523
NgoMIV GCCGGC 1 cut(s) 390
NlaIII CATG 2 cut(s) 221, 329
NlaIV GGNNCC 4 cut(s) 114, 180, 212, 419
NmuCI GTSAC 1 cut(s) 442
NsbI TGCGCA 2 cut(s) 46, 464
NspV TTCGAA 1 cut(s) 60
PciSI GCTCTTC 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 513
PdiI GCCGGC 1 cut(s) 392
PkrI GCNGC 2 cut(s) 44, 417
PleI GAGTC 1 cut(s) 494
PpsI GAGTC 1 cut(s) 494
PshAI GACNNNNGTC 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 4 cut(s) 114, 180, 212, 419
PspPI GGNCC 2 cut(s) 142, 417
PsuI RGATCY 2 cut(s) 272, 363
Rsr2I CGGWCCG 1 cut(s) 142
RsrII CGGWCCG 1 cut(s) 142
SapI GCTCTTC 1 cut(s) 333
SaqAI TTAA 2 cut(s) 423, 556
SatI GCNGC 2 cut(s) 43, 416
Sau3AI GATC 4 cut(s) 228, 272, 363, 523
Sau96I GGNCC 2 cut(s) 142, 417
SchI GAGTC 1 cut(s) 494
ScrFI CCNGG 1 cut(s) 110
SetI ASST 7 cut(s) 44, 78, 111, 132, 240, 261, 378
SexAI ACCWGGT 1 cut(s) 108
SfaNI GCATC 2 cut(s) 352, 483
SfcI CTRYAG 1 cut(s) 432
SfuI TTCGAA 1 cut(s) 60
SinI GGWCC 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 2 cut(s) 194, 518
SsiI CCGC 4 cut(s) 150, 406, 415, 451
SspMI CTAG 2 cut(s) 276, 497
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 142, 448
TaiI ACGT 1 cut(s) 240
TaqI TCGA 1 cut(s) 60
TasI AATT 2 cut(s) 194, 518
TauI GCSGC 1 cut(s) 418
Tru1I TTAA 2 cut(s) 423, 556
Tru9I TTAA 2 cut(s) 423, 556
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 4 cut(s) 180, 206, 289, 293
TspGWI ACGGA 1 cut(s) 526
VpaK11BI GGWCC 1 cut(s) 142
XapI RAATTY 1 cut(s) 518
XbaI TCTAGA 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 435
XspI CTAG 2 cut(s) 276, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.