RLG00000001674

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0010573
Physical Location & Seq
Forward (+)
18998554 .. 18999621
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001674

Sequence Viewer

Length: 609 bp
ATGTCAAGTTCAGTCGTGAGAGAGAGGCAATATATTTGTAGCTGCGCATATCAAGATTTCGAAGCCAACCCTGACCTCCTAGGCGAGTTGCCCTACAACCCTCCGGACCTGGTTCCAATCGTGTTCAAGCTCTGGAAGACGGTCCAAAGCGGTTTGATTGATGATGAAGATGATGAGGAGCCACCAAGTTTGGAATCGGAAGAATATAGGCTCCTTCATGTAGAAGTGATCAGGGACGTTGGTCTGTCGCGTCTCAAGCTATCATCTCCAAGATCTAGAAGTGAACTCAAAGAGCGCTTCATTCATATTCTTTCCACAAAACTCCATGTCCCAGAAGAAGAGCATCAAACTATCATTGACCAGATCTTTCAAGAGGTTGATAAGGATTGCCGCCGTTTTCCCCTCCGCCCATTGCGGCCCCTTAAAGTGGCTGTAGACATTGTGACTGTGCGGTTGCGATTGCGCCCTCCTCCTCCTCCTCCTCCACCTCCTCCGGTTGATTTTGATGTTTTCCGTCAGATGCTAGACTCAGACGACGGCAACGAATTTCTGATTGATGGGGTGTCTTTTCCTCATGATTCAATAGCTTTGAATATATCACTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

23.28

Weight (kDa)

4.79

Isoelectric Point (pI)

66.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 46
AccI GTMKAC 1 cut(s) 435
AccII CGCG 1 cut(s) 250
AccIII TCCGGA 1 cut(s) 103
AciI CCGC 5 cut(s) 150, 391, 406, 415, 451
AcsI RAATTY 1 cut(s) 545
AfeI AGCGCT 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 427
AgsI TTSAA 4 cut(s) 127, 371, 582, 592
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 4 cut(s) 42, 130, 259, 587
AluI AGCT 4 cut(s) 42, 130, 259, 587
Alw26I GTCTC 1 cut(s) 257
Aor13HI TCCGGA 1 cut(s) 103
Aor51HI AGCGCT 1 cut(s) 296
AoxI GGCC 1 cut(s) 416
ApeKI GCWGC 1 cut(s) 42
ApoI RAATTY 1 cut(s) 545
AspA2I CCTAGG 1 cut(s) 79
AspLEI GCGC 3 cut(s) 47, 297, 465
AspS9I GGNCC 3 cut(s) 106, 142, 417
AsuII TTCGAA 1 cut(s) 60
AvaII GGWCC 2 cut(s) 106, 142
AvrII CCTAGG 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 29
BccI CCATC 1 cut(s) 551
BceAI ACGGC 2 cut(s) 378, 553
BciT130I CCWGG 1 cut(s) 110
BclI TGATCA 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 4 cut(s) 80, 276, 524, 607
BfmI CTRYAG 1 cut(s) 432
BfoI RGCGCY 1 cut(s) 298
BglII AGATCT 2 cut(s) 272, 363
BisI GCNGC 3 cut(s) 43, 391, 416
BlnI CCTAGG 1 cut(s) 79
BlsI GCNGC 3 cut(s) 44, 392, 417
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 2 cut(s) 106, 142
BmgT120I GGNCC 3 cut(s) 106, 142, 417
BmiI GGNNCC 4 cut(s) 114, 180, 212, 419
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 2 cut(s) 352, 510
BoxI GACNNNNGTC 1 cut(s) 240
BpiI GAAGAC 1 cut(s) 143
Bpu14I TTCGAA 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 79
BsaWI WCCGGW 2 cut(s) 103, 493
Bsc4I CCNNNNNNNGG 1 cut(s) 427
Bse3DI GCAATG 1 cut(s) 410
BseAI TCCGGA 1 cut(s) 103
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 427
BseMI GCAATG 1 cut(s) 410
BseMII CTCAG 1 cut(s) 543
BseRI GAGGAG 7 cut(s) 191, 459, 462, 465, 468, 471, 480
BseXI GCAGC 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 250
BshFI GGCC 1 cut(s) 418
BsiSI CCGG 2 cut(s) 104, 494
BslFI GGGAC 2 cut(s) 248, 314
BslI CCNNNNNNNGG 1 cut(s) 427
BsmAI GTCTC 1 cut(s) 257
BsmBI CGTCTC 1 cut(s) 257
BsmFI GGGAC 2 cut(s) 248, 314
BsnI GGCC 1 cut(s) 418
Bsp119I TTCGAA 1 cut(s) 60
Bsp13I TCCGGA 1 cut(s) 103
Bsp143I GATC 3 cut(s) 228, 272, 363
BspACI CCGC 5 cut(s) 150, 391, 406, 415, 451
BspANI GGCC 1 cut(s) 418
BspCNI CTCAG 1 cut(s) 542
BspEI TCCGGA 1 cut(s) 103
BspFNI CGCG 1 cut(s) 250
BspHI TCATGA 1 cut(s) 574
BspLI GGNNCC 4 cut(s) 114, 180, 212, 419
BspQI GCTCTTC 1 cut(s) 333
BspT104I TTCGAA 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 410
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 3 cut(s) 228, 272, 363
BssT1I CCWWGG 1 cut(s) 79
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 2 cut(s) 142, 448
Bst6I CTCTTC 1 cut(s) 333
BstBI TTCGAA 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 529
BstFNI CGCG 1 cut(s) 250
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 3 cut(s) 47, 297, 465
BstKTI GATC 3 cut(s) 231, 275, 366
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 3 cut(s) 228, 272, 363
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstNI CCWGG 1 cut(s) 110
BstPAI GACNNNNGTC 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 432
BstUI CGCG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 29
BstV2I GAAGAC 1 cut(s) 143
BstX2I RGATCY 2 cut(s) 272, 363
BstYI RGATCY 2 cut(s) 272, 363
BsuRI GGCC 1 cut(s) 418
CciI TCATGA 1 cut(s) 574
CfoI GCGC 3 cut(s) 47, 297, 465
Cfr13I GGNCC 3 cut(s) 106, 142, 417
CseI GACGC 1 cut(s) 239
CsiI ACCWGGT 1 cut(s) 108
CspCI CAANNNNNGTGG 2 cut(s) 171, 206
CviAII CATG 3 cut(s) 218, 326, 575
CviJI RGCY 9 cut(s) 42, 65, 130, 181, 211, 259, 418, 431, 587
CviKI_1 RGCY 9 cut(s) 42, 65, 130, 181, 211, 259, 418, 431, 587
DdeI CTNAG 1 cut(s) 529
DpnI GATC 3 cut(s) 230, 274, 365
DpnII GATC 3 cut(s) 228, 272, 363
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
EciI GGCGGA 1 cut(s) 395
Eco130I CCWWGG 1 cut(s) 79
Eco47I GGWCC 2 cut(s) 106, 142
Eco47III AGCGCT 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
Esp3I CGTCTC 1 cut(s) 257
FaeI CATG 3 cut(s) 221, 329, 578
FaiI YATR 8 cut(s) 33, 49, 207, 219, 306, 327, 576, 596
FaqI GGGAC 2 cut(s) 248, 314
FatI CATG 3 cut(s) 217, 325, 574
FbaI TGATCA 1 cut(s) 228
FblI GTMKAC 1 cut(s) 435
Fnu4HI GCNGC 3 cut(s) 43, 391, 416
Fsp4HI GCNGC 3 cut(s) 43, 391, 416
FspBI CTAG 4 cut(s) 80, 276, 524, 607
FspI TGCGCA 1 cut(s) 46
GlaI GCGC 3 cut(s) 46, 296, 464
GluI GCNGC 3 cut(s) 43, 391, 416
HaeII RGCGCY 1 cut(s) 298
HaeIII GGCC 1 cut(s) 418
HapII CCGG 2 cut(s) 104, 494
HgaI GACGC 1 cut(s) 239
HhaI GCGC 3 cut(s) 47, 297, 465
Hin1II CATG 3 cut(s) 221, 329, 578
Hin6I GCGC 3 cut(s) 45, 295, 463
HinP1I GCGC 3 cut(s) 45, 295, 463
HinfI GANTC 3 cut(s) 194, 527, 578
HpaII CCGG 2 cut(s) 104, 494
Hpy166II GTNNAC 2 cut(s) 284, 436
Hpy188I TCNGA 4 cut(s) 199, 519, 532, 552
Hpy188III TCNNGA 7 cut(s) 16, 53, 104, 133, 276, 371, 575
Hpy8I GTNNAC 2 cut(s) 284, 436
Hpy99I CGWCG 1 cut(s) 539
HpyAV CCTTC 1 cut(s) 224
HpyCH4III ACNGT 2 cut(s) 142, 448
HpyCH4IV ACGT 1 cut(s) 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpyF3I CTNAG 1 cut(s) 529
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 3 cut(s) 221, 329, 578
HspAI GCGC 3 cut(s) 45, 295, 463
Kpn2I TCCGGA 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 228
Kzo9I GATC 3 cut(s) 228, 272, 363
LguI GCTCTTC 1 cut(s) 333
LmnI GCTCC 2 cut(s) 178, 216
LpnPI CCDG 9 cut(s) 84, 95, 117, 118, 122, 217, 345, 374, 507
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 2 cut(s) 352, 510
MabI ACCWGGT 1 cut(s) 108
MaeI CTAG 4 cut(s) 80, 276, 524, 607
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 442
MalI GATC 3 cut(s) 230, 274, 365
MboI GATC 3 cut(s) 228, 272, 363
MboII GAAGA 5 cut(s) 148, 179, 212, 347, 350
MflI RGATCY 2 cut(s) 272, 363
MluCI AATT 1 cut(s) 545
MlyI GAGTC 1 cut(s) 521
MroI TCCGGA 1 cut(s) 103
MseI TTAA 1 cut(s) 423
MspI CCGG 2 cut(s) 104, 494
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 250
MwoI GCNNNNNNNGC 1 cut(s) 256
NdeII GATC 3 cut(s) 228, 272, 363
NlaIII CATG 3 cut(s) 221, 329, 578
NlaIV GGNNCC 4 cut(s) 114, 180, 212, 419
NmuCI GTSAC 1 cut(s) 442
NsbI TGCGCA 1 cut(s) 46
NspV TTCGAA 1 cut(s) 60
PagI TCATGA 1 cut(s) 574
PciSI GCTCTTC 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 540
PfeI GAWTC 2 cut(s) 194, 578
PkrI GCNGC 3 cut(s) 44, 392, 417
PleI GAGTC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 521
PshAI GACNNNNGTC 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 4 cut(s) 114, 180, 212, 419
PspPI GGNCC 3 cut(s) 106, 142, 417
PsuI RGATCY 2 cut(s) 272, 363
SapI GCTCTTC 1 cut(s) 333
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 3 cut(s) 43, 391, 416
Sau3AI GATC 3 cut(s) 228, 272, 363
Sau96I GGNCC 3 cut(s) 106, 142, 417
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 1 cut(s) 110
SetI ASST 9 cut(s) 44, 78, 111, 132, 240, 261, 378, 490, 589
SexAI ACCWGGT 1 cut(s) 108
SfaNI GCATC 2 cut(s) 352, 510
SfcI CTRYAG 1 cut(s) 432
SfuI TTCGAA 1 cut(s) 60
SinI GGWCC 2 cut(s) 106, 142
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 1 cut(s) 545
SsiI CCGC 5 cut(s) 150, 391, 406, 415, 451
SspMI CTAG 4 cut(s) 80, 276, 524, 607
StyD4I CCNGG 1 cut(s) 108
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 2 cut(s) 142, 448
TaiI ACGT 1 cut(s) 240
TaqI TCGA 1 cut(s) 60
TasI AATT 1 cut(s) 545
TauI GCSGC 2 cut(s) 393, 418
TfiI GAWTC 2 cut(s) 194, 578
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 4 cut(s) 180, 206, 289, 293
TspGWI ACGGA 1 cut(s) 503
VpaK11BI GGWCC 2 cut(s) 106, 142
XapI RAATTY 1 cut(s) 545
XbaI TCTAGA 1 cut(s) 275
XmaJI CCTAGG 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 435
XspI CTAG 4 cut(s) 80, 276, 524, 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.