RLG00000003316

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0006962
Physical Location & Seq
Reverse (-)
47023011 .. 47025653
2643 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003316

Sequence Viewer

Length: 351 bp
ATGCTATGGTTGAGACTTGAGACTGATTGTGCTGAAGCAGTGCACCTAATTGAGTTGGGATCCAGAAAATTCAAGAGAGCGAAACGAAGCTGCTCATACCATAGCAAAGTCATGTCACTGCTATTCCACATCTCCTCCTTCCTCTTCTTCGATGTATGGTTCTGCCTAGTCCTCTCTCAGATTGCCTTCTTCTTCTTCTCGTCGCTGGTGACCTCATTCAATTGGTGGACAGTCGCCGTCTTCTTCAGTTCGTCGTGGATTCTCGCCGCCTTCCTCTGCGTCTTCTTCTTCAGCTCGTCGGTGGTGACCTTCAATTCGTGGATTCTTGTCACTGAAAGAAGAATACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.66

Weight (kDa)

9.16

Isoelectric Point (pI)

59.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 267
AclWI GGATC 2 cut(s) 54, 67
AcsI RAATTY 1 cut(s) 68
AcuI CTGAAG 3 cut(s) 54, 229, 274
AgsI TTSAA 3 cut(s) 73, 220, 313
AluBI AGCT 2 cut(s) 90, 294
AluI AGCT 2 cut(s) 90, 294
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 2 cut(s) 7, 14
Alw44I GTGCAC 1 cut(s) 41
AlwI GGATC 2 cut(s) 54, 67
ApaLI GTGCAC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 90
ApoI RAATTY 1 cut(s) 68
ArsI GACNNNNNNTTYG 2 cut(s) 298, 330
AsuHPI GGTGA 2 cut(s) 220, 316
BaeGI GKGCMC 1 cut(s) 45
BamHI GGATCC 1 cut(s) 59
BbsI GAAGAC 2 cut(s) 232, 274
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 221
BcoDI GTCTC 2 cut(s) 7, 14
BfaI CTAG 1 cut(s) 167
BisI GCNGC 2 cut(s) 91, 267
BlsI GCNGC 2 cut(s) 92, 268
BmiI GGNNCC 1 cut(s) 61
BpiI GAAGAC 2 cut(s) 232, 274
BpuEI CTTGAG 1 cut(s) 38
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
BseMII CTCAG 1 cut(s) 191
BseRI GAGGAG 1 cut(s) 124
BseSI GKGCMC 1 cut(s) 45
BseXI GCAGC 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 45
BsmAI GTCTC 2 cut(s) 7, 14
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 1 cut(s) 59
BspACI CCGC 1 cut(s) 267
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 61
BspPI GGATC 2 cut(s) 54, 67
BssMI GATC 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 1 cut(s) 149
BstDEI CTNAG 1 cut(s) 177
BstEII GGTNACC 2 cut(s) 208, 304
BstKTI GATC 1 cut(s) 62
BstMAI GTCTC 2 cut(s) 7, 14
BstMBI GATC 1 cut(s) 59
BstPI GGTNACC 2 cut(s) 208, 304
BstSLI GKGCMC 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 77
BstV2I GAAGAC 2 cut(s) 232, 274
BstX2I RGATCY 1 cut(s) 59
BstYI RGATCY 1 cut(s) 59
BtsI GCAGTG 2 cut(s) 45, 116
BtsIMutI CAGTG 3 cut(s) 45, 116, 330
CseI GACGC 1 cut(s) 268
CviAII CATG 1 cut(s) 112
CviJI RGCY 2 cut(s) 90, 294
CviKI_1 RGCY 2 cut(s) 90, 294
DdeI CTNAG 1 cut(s) 177
DpnI GATC 1 cut(s) 61
DpnII GATC 1 cut(s) 59
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco57I CTGAAG 3 cut(s) 54, 229, 274
Eco91I GGTNACC 2 cut(s) 208, 304
EcoO65I GGTNACC 2 cut(s) 208, 304
FaeI CATG 1 cut(s) 115
FaiI YATR 5 cut(s) 7, 97, 102, 113, 157
FalI AAGNNNNNCTT 1 cut(s) 331
FatI CATG 1 cut(s) 111
Fnu4HI GCNGC 2 cut(s) 91, 267
Fsp4HI GCNGC 2 cut(s) 91, 267
FspBI CTAG 1 cut(s) 167
GluI GCNGC 2 cut(s) 91, 267
HgaI GACGC 1 cut(s) 268
Hin1II CATG 1 cut(s) 115
HinfI GANTC 2 cut(s) 259, 322
HphI GGTGA 2 cut(s) 220, 316
Hpy166II GTNNAC 2 cut(s) 43, 228
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 2 cut(s) 63, 73
Hpy8I GTNNAC 2 cut(s) 43, 228
Hpy99I CGWCG 3 cut(s) 205, 256, 301
HpyAV CCTTC 4 cut(s) 148, 196, 280, 319
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 1 cut(s) 43
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 1 cut(s) 115
Kzo9I GATC 1 cut(s) 59
LpnPI CCDG 2 cut(s) 76, 191
Lsp1109I GCAGC 1 cut(s) 77
MaeI CTAG 1 cut(s) 167
MaeIII GTNAC 4 cut(s) 114, 208, 304, 328
MalI GATC 1 cut(s) 61
MboI GATC 1 cut(s) 59
MfeI CAATTG 1 cut(s) 220
MflI RGATCY 1 cut(s) 59
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 4 cut(s) 48, 68, 220, 313
MnlI CCTC 5 cut(s) 145, 152, 182, 223, 284
MunI CAATTG 1 cut(s) 220
NdeII GATC 1 cut(s) 59
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 4 cut(s) 114, 208, 304, 328
PfeI GAWTC 2 cut(s) 259, 322
PkrI GCNGC 2 cut(s) 92, 268
PspEI GGTNACC 2 cut(s) 208, 304
PspN4I GGNNCC 1 cut(s) 61
PsuI RGATCY 1 cut(s) 59
SatI GCNGC 2 cut(s) 91, 267
Sau3AI GATC 1 cut(s) 59
SduI GDGCHC 1 cut(s) 45
SetI ASST 6 cut(s) 48, 92, 215, 296, 311, 349
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
Sse9I AATT 4 cut(s) 48, 68, 220, 313
SsiI CCGC 1 cut(s) 267
SspMI CTAG 1 cut(s) 167
TaaI ACNGT 1 cut(s) 232
TaqI TCGA 1 cut(s) 150
TasI AATT 4 cut(s) 48, 68, 220, 313
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 2 cut(s) 259, 322
TscAI CASTG 3 cut(s) 45, 123, 337
TseFI GTSAC 4 cut(s) 114, 208, 304, 328
TseI GCWGC 1 cut(s) 90
Tsp45I GTSAC 4 cut(s) 114, 208, 304, 328
TspRI CASTG 3 cut(s) 45, 123, 337
VneI GTGCAC 1 cut(s) 41
XapI RAATTY 1 cut(s) 68
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.