Rh7DG283600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0006962
Physical Location & Seq
Forward (+)
30798840 .. 30799959
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG283600.1

Sequence Viewer

Length: 426 bp
ATGATAATAATTGATGCTTACCTTGACAAGCAGTTGCCTCTTTCTGATCACAAGTACAAAACCTACTTCTTGAAGCCAACAATGGGTGCTTGGATTATGCTGCCAGGAAGTATACCTTGGAGAGAATGTTTGCAAACCAGCTACTCGAATGTGCAAAAGATCAATTATCATTTAGGGCCGTGGGTGATCAAGTATTTTCTGAGTTTATGTTGTGTAGATACTTTTCACGAAGAGAAGAGCAGACGTGAAAGAAGAAAAGAAAACAAAGCTTTGACTATGGAATTGTTGGCTGTGGCATATTCGTCCCTTGTAGCCAAAATGGAGGAGATTATATATAGGTTGGTCATGCTGGAATTTTCAGCCACACATAAGTATTCTCTTGCATCTAATTCAACTTACAATGTGGAAGAGGCTGGTGATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

16.48

Weight (kDa)

7.7

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 112
AcsI RAATTY 1 cut(s) 353
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 2 cut(s) 73, 393
AjiI CACGTC 1 cut(s) 245
AjnI CCWGG 1 cut(s) 103
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AluBI AGCT 2 cut(s) 141, 269
AluI AGCT 2 cut(s) 141, 269
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 100
ApoI RAATTY 1 cut(s) 353
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 196
BbvI GCAGC 1 cut(s) 87
BceAI ACGGC 1 cut(s) 163
BciT130I CCWGG 1 cut(s) 105
BclI TGATCA 2 cut(s) 46, 186
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
Bme1390I CCNGG 1 cut(s) 105
BmgBI CACGTC 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 2 cut(s) 4, 392
BsaJI CCNNGG 2 cut(s) 116, 179
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
Bsc4I CCNNNNNNNGG 1 cut(s) 83
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 2 cut(s) 116, 179
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 191
BseRI GAGGAG 1 cut(s) 338
BseXI GCAGC 1 cut(s) 87
BshFI GGCC 1 cut(s) 178
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 289
BsnI GGCC 1 cut(s) 178
Bsp143I GATC 4 cut(s) 46, 159, 186, 418
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 1 cut(s) 192
BspQI GCTCTTC 1 cut(s) 230
BssECI CCNNGG 2 cut(s) 116, 179
BssMI GATC 4 cut(s) 46, 159, 186, 418
BssNAI GTATAC 1 cut(s) 113
BssT1I CCWWGG 1 cut(s) 116
Bst1107I GTATAC 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 105
Bst6I CTCTTC 3 cut(s) 225, 230, 402
BstDEI CTNAG 1 cut(s) 200
BstDSI CCRYGG 1 cut(s) 179
BstKTI GATC 4 cut(s) 49, 162, 189, 421
BstMBI GATC 4 cut(s) 46, 159, 186, 418
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 87
BstZ17I GTATAC 1 cut(s) 113
BsuRI GGCC 1 cut(s) 178
BtgI CCRYGG 1 cut(s) 179
BtrI CACGTC 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 55
CviAII CATG 1 cut(s) 346
CviJI RGCY 8 cut(s) 76, 141, 178, 269, 290, 314, 362, 413
CviKI_1 RGCY 8 cut(s) 76, 141, 178, 269, 290, 314, 362, 413
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 1 cut(s) 200
DpnI GATC 4 cut(s) 48, 161, 188, 420
DpnII GATC 4 cut(s) 46, 159, 186, 418
Eam1104I CTCTTC 3 cut(s) 225, 230, 402
EarI CTCTTC 3 cut(s) 225, 230, 402
Eco130I CCWWGG 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 116
FaeI CATG 1 cut(s) 349
FalI AAGNNNNNCTT 2 cut(s) 100, 132
FaqI GGGAC 1 cut(s) 289
FatI CATG 1 cut(s) 345
FbaI TGATCA 2 cut(s) 46, 186
FblI GTMKAC 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 101
Fsp4HI GCNGC 1 cut(s) 101
GluI GCNGC 1 cut(s) 101
HaeIII GGCC 1 cut(s) 178
Hin1II CATG 1 cut(s) 349
HindIII AAGCTT 1 cut(s) 267
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 46, 201
Hpy188III TCNNGA 2 cut(s) 70, 227
Hpy8I GTNNAC 1 cut(s) 113
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 3 cut(s) 133, 154, 383
HpyF3I CTNAG 1 cut(s) 200
HpySE526I ACGT 1 cut(s) 244
Hsp92II CATG 1 cut(s) 349
Ksp22I TGATCA 2 cut(s) 46, 186
Kzo9I GATC 4 cut(s) 46, 159, 186, 418
LguI GCTCTTC 1 cut(s) 230
LpnPI CCDG 5 cut(s) 90, 117, 151, 335, 399
Lsp1109I GCAGC 1 cut(s) 87
LweI GCATC 2 cut(s) 4, 392
MaeII ACGT 1 cut(s) 244
MalI GATC 4 cut(s) 48, 161, 188, 420
MboI GATC 4 cut(s) 46, 159, 186, 418
MboII GAAGA 4 cut(s) 242, 247, 264, 419
MluCI AATT 5 cut(s) 9, 163, 281, 353, 388
MnlI CCTC 3 cut(s) 48, 316, 403
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
NdeII GATC 4 cut(s) 46, 159, 186, 418
NlaIII CATG 1 cut(s) 349
PciSI GCTCTTC 1 cut(s) 230
PkrI GCNGC 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspPI GGNCC 1 cut(s) 176
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SapI GCTCTTC 1 cut(s) 230
SatI GCNGC 1 cut(s) 101
Sau3AI GATC 4 cut(s) 46, 159, 186, 418
Sau96I GGNCC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 105
SetI ASST 7 cut(s) 24, 65, 118, 143, 247, 271, 341
SfaNI GCATC 2 cut(s) 4, 392
Sse9I AATT 5 cut(s) 9, 163, 281, 353, 388
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 1 cut(s) 116
TaiI ACGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 146
TasI AATT 5 cut(s) 9, 163, 281, 353, 388
TatI WGTACW 1 cut(s) 54
TseI GCWGC 1 cut(s) 100
XapI RAATTY 1 cut(s) 353
XmiI GTMKAC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.