Rmu_sc0003649.1_g000005

Clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003649.1
OG0006962
Physical Location & Seq
Forward (+)
16389 .. 19671
3283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003649.1_g000005.1.cds

Sequence Viewer

Length: 690 bp
atggaagagtacgtcagagaagctccccgtgtctcaatagttcgcaaggagggtttgaatgatcatgttcccgatactgcagcattagatgagaagaatgccatggctttagctattgttccagtttctgatcaacctgcggctcaacctcaagcaaatggaacaggttgggaattggcacttgttacagccccaagctcaaatgagagtgccacagctactagcaaactggctgctaaaactaattgcagtggggactatgtcaatgtggaacttaacaatacactttgtgttactgctcttcaaaaaattaaagattgtcttctacaaataaatcttgcacaaattttggaaccccaatgtgcttttgcatctggtagaacaactgagttggatgggatcttagagctcgagaagcaagtactatggattacctcctttcagagtctaagctacctgaattgcattaccggttgtgtagatacttttcacgaagagaagagcaaacgtgaaagaagaaaaggaaacaaagctttgactatggaattattggctgtggcatattcgtcccttgtagccaaaatggaggagattatacataggttggccatgctggaattttcagccacacagaagtattctcttgcatctaattcaacttacaatgtggaagaggttggtgatctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

229

Amino Acids

25.07

Weight (kDa)

4.93

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 145
AciI CCGC 1 cut(s) 140
AclWI GGATC 1 cut(s) 407
AcoI YGGCCR 1 cut(s) 606
AcsI RAATTY 2 cut(s) 345, 617
AdeI CACNNNGTG 1 cut(s) 290
AfaI GTAC 2 cut(s) 11, 423
AgeI ACCGGT 1 cut(s) 470
AgsI TTSAA 3 cut(s) 58, 305, 657
AluBI AGCT 7 cut(s) 23, 113, 198, 218, 409, 453, 533
AluI AGCT 7 cut(s) 23, 113, 198, 218, 409, 453, 533
Alw21I GWGCWC 1 cut(s) 411
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 1 cut(s) 407
AlwNI CAGNNNCTG 1 cut(s) 128
Ama87I CYCGRG 1 cut(s) 410
AoxI GGCC 1 cut(s) 606
ApeKI GCWGC 2 cut(s) 80, 233
ApoI RAATTY 2 cut(s) 345, 617
AsiGI ACCGGT 1 cut(s) 470
AvaI CYCGRG 1 cut(s) 410
BalI TGGCCA 1 cut(s) 608
BanII GRGCYC 1 cut(s) 411
BbsI GAAGAC 1 cut(s) 314
Bbv12I GWGCWC 1 cut(s) 411
BbvI GCAGC 2 cut(s) 92, 220
BccI CCATC 1 cut(s) 389
BclI TGATCA 2 cut(s) 61, 130
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 1 cut(s) 222
BfmI CTRYAG 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 145
BisI GCNGC 3 cut(s) 81, 141, 234
BlsI GCNGC 3 cut(s) 82, 142, 235
BmcAI AGTACT 1 cut(s) 423
BmeT110I CYCGRG 1 cut(s) 410
BmiI GGNNCC 1 cut(s) 354
BmsI GCATC 2 cut(s) 380, 656
BpiI GAAGAC 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 102
BsaWI WCCGGW 1 cut(s) 470
Bse118I RCCGGY 1 cut(s) 470
Bse1I ACTGG 2 cut(s) 122, 234
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 400
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 2 cut(s) 122, 234
BseRI GAGGAG 1 cut(s) 602
BseXI GCAGC 2 cut(s) 92, 220
BshFI GGCC 1 cut(s) 608
BshTI ACCGGT 1 cut(s) 470
BsiHKAI GWGCWC 1 cut(s) 411
BsiHKCI CYCGRG 1 cut(s) 410
BsiSI CCGG 1 cut(s) 471
BslFI GGGAC 2 cut(s) 269, 553
BsmAI GTCTC 1 cut(s) 37
BsmFI GGGAC 2 cut(s) 269, 553
BsmI GAATGC 1 cut(s) 103
BsnI GGCC 1 cut(s) 608
BsoBI CYCGRG 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 411
Bsp143I GATC 4 cut(s) 61, 130, 399, 682
Bsp19I CCATGG 1 cut(s) 102
BspACI CCGC 1 cut(s) 140
BspANI GGCC 1 cut(s) 608
BspCNI CTCAG 1 cut(s) 379
BspLI GGNNCC 1 cut(s) 354
BspMAI CTGCAG 1 cut(s) 82
BspMI ACCTGC 1 cut(s) 145
BspPI GGATC 1 cut(s) 407
BspQI GCTCTTC 2 cut(s) 306, 494
BsrFI RCCGGY 1 cut(s) 470
BsrI ACTGG 2 cut(s) 122, 234
BssAI RCCGGY 1 cut(s) 470
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 4 cut(s) 61, 130, 399, 682
BssT1I CCWWGG 1 cut(s) 102
Bst6I CTCTTC 4 cut(s) 306, 489, 494, 666
BstDEI CTNAG 3 cut(s) 387, 403, 449
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 400
BstKTI GATC 4 cut(s) 64, 133, 402, 685
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 4 cut(s) 61, 130, 399, 682
BstMWI GCNNNNNNNGC 1 cut(s) 415
BstSFI CTRYAG 1 cut(s) 78
BstV1I GCAGC 2 cut(s) 92, 220
BstV2I GAAGAC 1 cut(s) 314
BstX2I RGATCY 1 cut(s) 399
BstYI RGATCY 1 cut(s) 399
BsuRI GGCC 1 cut(s) 608
BtgI CCRYGG 1 cut(s) 102
BtsCI GGATG 1 cut(s) 400
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 256
BveI ACCTGC 1 cut(s) 145
CaiI CAGNNNCTG 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 470
Csp6I GTAC 2 cut(s) 10, 422
CspAI ACCGGT 1 cut(s) 470
CviAII CATG 3 cut(s) 65, 103, 610
CviQI GTAC 2 cut(s) 10, 422
DdeI CTNAG 3 cut(s) 387, 403, 449
DpnI GATC 4 cut(s) 63, 132, 401, 684
DpnII GATC 4 cut(s) 61, 130, 399, 682
DraIII CACNNNGTG 1 cut(s) 290
EaeI YGGCCR 1 cut(s) 606
Eam1104I CTCTTC 4 cut(s) 306, 489, 494, 666
EarI CTCTTC 4 cut(s) 306, 489, 494, 666
Ecl136II GAGCTC 1 cut(s) 409
Eco130I CCWWGG 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 411
Eco53kI GAGCTC 1 cut(s) 409
Eco88I CYCGRG 1 cut(s) 410
EcoICRI GAGCTC 1 cut(s) 409
EcoT14I CCWWGG 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 3 cut(s) 68, 106, 613
FaiI YATR 9 cut(s) 66, 104, 261, 427, 542, 562, 596, 600, 611
FalI AAGNNNNNCTT 2 cut(s) 306, 338
FaqI GGGAC 2 cut(s) 269, 553
FatI CATG 3 cut(s) 64, 102, 609
FbaI TGATCA 2 cut(s) 61, 130
Fnu4HI GCNGC 3 cut(s) 81, 141, 234
FokI GGATG 1 cut(s) 407
FriOI GRGCYC 1 cut(s) 411
Fsp4HI GCNGC 3 cut(s) 81, 141, 234
FspBI CTAG 1 cut(s) 222
GluI GCNGC 3 cut(s) 81, 141, 234
HaeIII GGCC 1 cut(s) 608
HapII CCGG 1 cut(s) 471
Hin1II CATG 3 cut(s) 68, 106, 613
HindIII AAGCTT 1 cut(s) 531
HinfI GANTC 1 cut(s) 445
HpaII CCGG 1 cut(s) 471
Hpy188I TCNGA 3 cut(s) 17, 130, 444
Hpy188III TCNNGA 3 cut(s) 71, 412, 491
HpyCH4IV ACGT 2 cut(s) 12, 508
HpyCH4V TGCA 6 cut(s) 80, 249, 341, 371, 465, 647
HpyF10VI GCNNNNNNNGC 1 cut(s) 415
HpyF3I CTNAG 3 cut(s) 387, 403, 449
HpySE526I ACGT 2 cut(s) 12, 508
Hsp92II CATG 3 cut(s) 68, 106, 613
Ksp22I TGATCA 2 cut(s) 61, 130
Kzo9I GATC 4 cut(s) 61, 130, 399, 682
LguI GCTCTTC 2 cut(s) 306, 494
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 8 cut(s) 135, 150, 150, 215, 360, 470, 484, 599
Lsp1109I GCAGC 2 cut(s) 92, 220
LweI GCATC 2 cut(s) 380, 656
MaeI CTAG 1 cut(s) 222
MaeII ACGT 2 cut(s) 12, 508
MaeIII GTNAC 2 cut(s) 184, 292
MalI GATC 4 cut(s) 63, 132, 401, 684
MboI GATC 4 cut(s) 61, 130, 399, 682
MboII GAAGA 8 cut(s) 17, 106, 293, 314, 506, 511, 528, 683
MflI RGATCY 1 cut(s) 399
MhlI GDGCHC 1 cut(s) 411
MlsI TGGCCA 1 cut(s) 608
MluCI AATT 8 cut(s) 173, 244, 309, 345, 460, 545, 617, 652
MluNI TGGCCA 1 cut(s) 608
MlyI GAGTC 1 cut(s) 454
MmeI TCCRAC 1 cut(s) 372
MnlI CCTC 5 cut(s) 43, 159, 445, 580, 667
Mox20I TGGCCA 1 cut(s) 608
MscI TGGCCA 1 cut(s) 608
MseI TTAA 2 cut(s) 276, 312
Msp20I TGGCCA 1 cut(s) 608
MspI CCGG 1 cut(s) 471
Mva1269I GAATGC 1 cut(s) 103
MwoI GCNNNNNNNGC 1 cut(s) 415
NcoI CCATGG 1 cut(s) 102
NdeII GATC 4 cut(s) 61, 130, 399, 682
NlaIII CATG 3 cut(s) 68, 106, 613
NlaIV GGNNCC 1 cut(s) 354
PaeR7I CTCGAG 1 cut(s) 410
PciSI GCTCTTC 2 cut(s) 306, 494
PctI GAATGC 1 cut(s) 103
PflFI GACNNNGTC 1 cut(s) 260
PinAI ACCGGT 1 cut(s) 470
PkrI GCNGC 3 cut(s) 82, 142, 235
PleI GAGTC 1 cut(s) 453
PpsI GAGTC 1 cut(s) 453
Psp124BI GAGCTC 1 cut(s) 411
PspN4I GGNNCC 1 cut(s) 354
PstI CTGCAG 1 cut(s) 82
PstNI CAGNNNCTG 1 cut(s) 128
PsuI RGATCY 1 cut(s) 399
PsyI GACNNNGTC 1 cut(s) 260
RsaI GTAC 2 cut(s) 11, 423
RsaNI GTAC 2 cut(s) 10, 422
SacI GAGCTC 1 cut(s) 411
SapI GCTCTTC 2 cut(s) 306, 494
SaqAI TTAA 2 cut(s) 276, 312
SatI GCNGC 3 cut(s) 81, 141, 234
Sau3AI GATC 4 cut(s) 61, 130, 399, 682
ScaI AGTACT 1 cut(s) 423
SchI GAGTC 1 cut(s) 454
SduI GDGCHC 1 cut(s) 411
SfaNI GCATC 2 cut(s) 380, 656
SfcI CTRYAG 1 cut(s) 78
Sfr274I CTCGAG 1 cut(s) 410
SlaI CTCGAG 1 cut(s) 410
SmlI CTYRAG 2 cut(s) 150, 410
SmoI CTYRAG 2 cut(s) 150, 410
Sse9I AATT 8 cut(s) 173, 244, 309, 345, 460, 545, 617, 652
SsiI CCGC 1 cut(s) 140
SspMI CTAG 1 cut(s) 222
SstI GAGCTC 1 cut(s) 411
StyI CCWWGG 1 cut(s) 102
TaiI ACGT 2 cut(s) 15, 511
TaqI TCGA 1 cut(s) 411
TasI AATT 8 cut(s) 173, 244, 309, 345, 460, 545, 617, 652
TatI WGTACW 1 cut(s) 421
TauI GCSGC 1 cut(s) 143
Tru1I TTAA 2 cut(s) 276, 312
Tru9I TTAA 2 cut(s) 276, 312
TscAI CASTG 1 cut(s) 256
TseI GCWGC 2 cut(s) 80, 233
TspRI CASTG 1 cut(s) 256
Tth111I GACNNNGTC 1 cut(s) 260
XapI RAATTY 2 cut(s) 345, 617
XhoI CTCGAG 1 cut(s) 410
XspI CTAG 1 cut(s) 222
ZrmI AGTACT 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.