Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000448.1

Orthogroup ID

OG0006962

Physical Location & Seq

Genomic Coordinates Forward (+)

36196 .. 40379

Gene Structure 4184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000448.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

atggaagagtacgtcagagaagctccccgtgtctcaatagttcgcaaggaggtgattgacaataaaatttccgcccccaaggaaatcttggccatagaggacaaaaagacccaagacgatgaggcacgtccaccttccccacctccacctaaaccagtaaaagtggtggcacctgtagttgaaccacttgatttgctgggtttgaatgatcatgttcccgatactgcagcattagatgagaagaatgccatggctttagctattgttccagtttctgatcaacctgcggctcaacctcaagcaaatggaacaggttgggaattggcacttgttacagccccaagctcaaatgagagtgccacagctactagcaaactggtggccaacataatctttatagatgcaccagttggtgctgggtcttcatactctacaacctcggaaggtggggactatgtcaatgtgaaacttaacaatacactttgtgttactgctcttcaaaaaattaaagattgtcttctacaaataaatcttgcacaaattttggaaccccaatgtgcttttgcatctggtagaacaactgagttggagtgggatcttagagctcgagaagcaagtactatggattacctcctttcagagtctaagctacctgaattgccttgccgggctttccttgtttccagggatatacttatgtgcttgcctataggtggaagtagaacaactgagttggatgggatcttagagctcgagaagcaagtactatggattacctcctttcagagtctaagctacccgaactgcattgccggttgtgtagatacttttcacgaagagaacagcaaacgtgaaagaagaaaagaaaacaaagctttgactatggaattgttggttgtggcatattcgtcccttgtagccaaaatggaggagattatatataggttggtcatgctggaattttcagccacacagaagtattctcttgcatctaattcaacttacaatgtggaaaaggctggtgatctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANTH

Protein Analysis

343

Amino Acids

37.55

Weight (kDa)

4.8

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006962)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318611 RchiOBHm_Chr1g0341641 RchiOBHm_Chr1g0354541 RchiOBHm_Chr3g0482911 RchiOBHm_Chr5g0035021 RchiOBHm_Chr5g0047811 RchiOBHm_Chr7g0197521 RchiOBHm_Chr7g0238071
rosa_laevigata	RLG00000003316
rosa_multiflora	Rmu_sc0000448.1_g000003 Rmu_sc0003649.1_g000005
rosa_roxburghii	Rroxscaffold_2G00103970 Rroxscaffold_2G00130530 Rroxscaffold_3G00249080 Rroxscaffold_5G00352090
rosa_rugosa	Rorug04G0450500
rosa_samantha	Rh1CG095200 Rh1DG103400 Rh1DG161800 Rh2AG419500 Rh2CG633100 Rh4DG048500 Rh4DG157000 Rh6CG047200 Rh6CG255000 Rh7DG283600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	292
AccB1I	GGYRCC	1 cut(s)	169
AciI	CCGC	2 cut(s)	72, 287
AclWI	GGATC	2 cut(s)	603, 749
AcoI	YGGCCR	2 cut(s)	90, 381
AcsI	RAATTY	3 cut(s)	66, 540, 959
AdeI	CACNNNGTG	1 cut(s)	485
AfaI	GTAC	3 cut(s)	11, 619, 765
AfiI	CCNNNNNNNGG	1 cut(s)	713
AgsI	TTSAA	4 cut(s)	182, 205, 500, 999
AjiI	CACGTC	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	683
AluBI	AGCT	9 cut(s)	23, 260, 345, 365, 605, 649, 751, 795, 875
AluI	AGCT	9 cut(s)	23, 260, 345, 365, 605, 649, 751, 795, 875
Alw21I	GWGCWC	2 cut(s)	607, 753
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	2 cut(s)	603, 749
AlwNI	CAGNNNCTG	1 cut(s)	275
Ama87I	CYCGRG	2 cut(s)	606, 752
AoxI	GGCC	2 cut(s)	90, 381
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	3 cut(s)	66, 540, 959
AsuC2I	CCSGG	1 cut(s)	668
AsuHPI	GGTGA	1 cut(s)	64
AvaI	CYCGRG	2 cut(s)	606, 752
BalI	TGGCCA	2 cut(s)	92, 383
BanI	GGYRCC	1 cut(s)	169
BanII	GRGCYC	2 cut(s)	607, 753
BbsI	GAAGAC	2 cut(s)	414, 509
Bbv12I	GWGCWC	2 cut(s)	607, 753
BbvI	GCAGC	1 cut(s)	239
BccI	CCATC	1 cut(s)	731
BciT130I	CCWGG	1 cut(s)	685
BclI	TGATCA	2 cut(s)	208, 277
BcnI	CCSGG	1 cut(s)	668
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	369
BfmI	CTRYAG	3 cut(s)	174, 225, 708
BfuAI	ACCTGC	1 cut(s)	292
BisI	GCNGC	2 cut(s)	228, 288
BlsI	GCNGC	2 cut(s)	229, 289
BmcAI	AGTACT	2 cut(s)	619, 765
Bme1390I	CCNGG	2 cut(s)	668, 685
BmeT110I	CYCGRG	2 cut(s)	606, 752
BmgBI	CACGTC	1 cut(s)	128
BmiI	GGNNCC	2 cut(s)	171, 549
BmrFI	CCNGG	2 cut(s)	668, 685
BmsI	GCATC	3 cut(s)	391, 575, 998
BpiI	GAAGAC	2 cut(s)	414, 509
BpuEI	CTTGAG	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	668
BsaJI	CCNNGG	4 cut(s)	78, 249, 438, 684
Bsc4I	CCNNNNNNNGG	1 cut(s)	713
Bse118I	RCCGGY	1 cut(s)	812
Bse1I	ACTGG	4 cut(s)	155, 269, 381, 407
Bse3DI	GCAATG	1 cut(s)	807
BseBI	CCWGG	1 cut(s)	685
BseDI	CCNNGG	4 cut(s)	78, 249, 438, 684
BseGI	GGATG	1 cut(s)	742
BseLI	CCNNNNNNNGG	1 cut(s)	713
BseMI	GCAATG	1 cut(s)	807
BseMII	CTCAG	2 cut(s)	573, 720
BseNI	ACTGG	4 cut(s)	155, 269, 381, 407
BseRI	GAGGAG	1 cut(s)	944
BseXI	GCAGC	1 cut(s)	239
BseYI	CCCAGC	2 cut(s)	196, 416
BshFI	GGCC	2 cut(s)	92, 383
BshNI	GGYRCC	1 cut(s)	169
BsiHKAI	GWGCWC	2 cut(s)	607, 753
BsiHKCI	CYCGRG	2 cut(s)	606, 752
BsiSI	CCGG	2 cut(s)	667, 813
BslFI	GGGAC	2 cut(s)	464, 895
BslI	CCNNNNNNNGG	1 cut(s)	713
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	2 cut(s)	464, 895
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	2 cut(s)	92, 383
BsoBI	CYCGRG	2 cut(s)	606, 752
Bsp1286I	GDGCHC	2 cut(s)	607, 753
Bsp143I	GATC	5 cut(s)	208, 277, 595, 741, 1024
Bsp19I	CCATGG	1 cut(s)	249
BspACI	CCGC	2 cut(s)	72, 287
BspANI	GGCC	2 cut(s)	92, 383
BspCNI	CTCAG	2 cut(s)	574, 721
BspLI	GGNNCC	2 cut(s)	171, 549
BspMAI	CTGCAG	1 cut(s)	229
BspMI	ACCTGC	1 cut(s)	292
BspPI	GGATC	2 cut(s)	603, 749
BspQI	GCTCTTC	1 cut(s)	501
BspT107I	GGYRCC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	807
BsrFI	RCCGGY	1 cut(s)	812
BsrI	ACTGG	4 cut(s)	155, 269, 381, 407
BssAI	RCCGGY	1 cut(s)	812
BssECI	CCNNGG	4 cut(s)	78, 249, 438, 684
BssMI	GATC	5 cut(s)	208, 277, 595, 741, 1024
BssT1I	CCWWGG	2 cut(s)	78, 249
Bst2UI	CCWGG	1 cut(s)	685
Bst6I	CTCTTC	2 cut(s)	501, 831
BstC8I	GCNNGC	1 cut(s)	704
BstDEI	CTNAG	6 cut(s)	582, 599, 645, 729, 745, 791
BstDSI	CCRYGG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	742
BstKTI	GATC	5 cut(s)	211, 280, 598, 744, 1027
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	5 cut(s)	208, 277, 595, 741, 1024
BstMWI	GCNNNNNNNGC	2 cut(s)	611, 757
BstNI	CCWGG	1 cut(s)	685
BstSCI	CCNGG	2 cut(s)	666, 683
BstSFI	CTRYAG	3 cut(s)	174, 225, 708
BstV1I	GCAGC	1 cut(s)	239
BstV2I	GAAGAC	2 cut(s)	414, 509
BstX2I	RGATCY	2 cut(s)	595, 741
BstYI	RGATCY	2 cut(s)	595, 741
BsuRI	GGCC	2 cut(s)	92, 383
BtgI	CCRYGG	1 cut(s)	249
BtrI	CACGTC	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	742
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	704
CaiI	CAGNNNCTG	1 cut(s)	275
Cfr10I	RCCGGY	1 cut(s)	812
Csp6I	GTAC	3 cut(s)	10, 618, 764
CspCI	CAANNNNNGTGG	2 cut(s)	174, 209
CviAII	CATG	3 cut(s)	212, 250, 952
CviQI	GTAC	3 cut(s)	10, 618, 764
DdeI	CTNAG	6 cut(s)	582, 599, 645, 729, 745, 791
DpnI	GATC	5 cut(s)	210, 279, 597, 743, 1026
DpnII	GATC	5 cut(s)	208, 277, 595, 741, 1024
DraIII	CACNNNGTG	1 cut(s)	485
EaeI	YGGCCR	2 cut(s)	90, 381
Eam1104I	CTCTTC	2 cut(s)	501, 831
EarI	CTCTTC	2 cut(s)	501, 831
EciI	GGCGGA	1 cut(s)	61
Ecl136II	GAGCTC	2 cut(s)	605, 751
Eco130I	CCWWGG	2 cut(s)	78, 249
Eco24I	GRGCYC	2 cut(s)	607, 753
Eco53kI	GAGCTC	2 cut(s)	605, 751
Eco88I	CYCGRG	2 cut(s)	606, 752
EcoICRI	GAGCTC	2 cut(s)	605, 751
EcoRII	CCWGG	1 cut(s)	683
EcoT14I	CCWWGG	2 cut(s)	78, 249
EcoT38I	GRGCYC	2 cut(s)	607, 753
ErhI	CCWWGG	2 cut(s)	78, 249
FaeI	CATG	3 cut(s)	215, 253, 955
FalI	AAGNNNNNCTT	4 cut(s)	71, 103, 501, 533
FaqI	GGGAC	2 cut(s)	464, 895
FatI	CATG	3 cut(s)	211, 249, 951
FbaI	TGATCA	2 cut(s)	208, 277
Fnu4HI	GCNGC	2 cut(s)	228, 288
FokI	GGATG	1 cut(s)	749
FriOI	GRGCYC	2 cut(s)	607, 753
Fsp4HI	GCNGC	2 cut(s)	228, 288
FspBI	CTAG	1 cut(s)	369
GluI	GCNGC	2 cut(s)	228, 288
GsaI	CCCAGC	2 cut(s)	200, 420
HaeIII	GGCC	2 cut(s)	92, 383
HapII	CCGG	2 cut(s)	667, 813
Hin1II	CATG	3 cut(s)	215, 253, 955
HindIII	AAGCTT	1 cut(s)	873
HinfI	GANTC	2 cut(s)	641, 787
HpaII	CCGG	2 cut(s)	667, 813
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	1 cut(s)	131
Hpy188I	TCNGA	5 cut(s)	17, 277, 442, 640, 786
Hpy188III	TCNNGA	4 cut(s)	218, 608, 754, 833
Hpy8I	GTNNAC	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	144, 437
HpyCH4IV	ACGT	3 cut(s)	12, 127, 850
HpyCH4V	TGCA	6 cut(s)	227, 404, 536, 566, 807, 989
HpyF10VI	GCNNNNNNNGC	2 cut(s)	611, 757
HpyF3I	CTNAG	6 cut(s)	582, 599, 645, 729, 745, 791
HpySE526I	ACGT	3 cut(s)	12, 127, 850
Hsp92II	CATG	3 cut(s)	215, 253, 955
Ksp22I	TGATCA	2 cut(s)	208, 277
Kzo9I	GATC	5 cut(s)	208, 277, 595, 741, 1024
LguI	GCTCTTC	1 cut(s)	501
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	1 cut(s)	239
LweI	GCATC	3 cut(s)	391, 575, 998
MaeI	CTAG	1 cut(s)	369
MaeII	ACGT	3 cut(s)	12, 127, 850
MaeIII	GTNAC	2 cut(s)	331, 487
MalI	GATC	5 cut(s)	210, 279, 597, 743, 1026
MboI	GATC	5 cut(s)	208, 277, 595, 741, 1024
MboII	GAAGA	7 cut(s)	17, 253, 414, 488, 509, 848, 870
MflI	RGATCY	2 cut(s)	595, 741
MhlI	GDGCHC	2 cut(s)	607, 753
MlsI	TGGCCA	2 cut(s)	92, 383
MluCI	AATT	8 cut(s)	66, 320, 504, 540, 656, 887, 959, 994
MluNI	TGGCCA	2 cut(s)	92, 383
MlyI	GAGTC	2 cut(s)	650, 796
MmeI	TCCRAC	2 cut(s)	567, 714
MnlI	CCTC	9 cut(s)	43, 91, 115, 153, 306, 448, 641, 787, 922
Mox20I	TGGCCA	2 cut(s)	92, 383
MscI	TGGCCA	2 cut(s)	92, 383
MseI	TTAA	2 cut(s)	471, 507
Msp20I	TGGCCA	2 cut(s)	92, 383
MspI	CCGG	2 cut(s)	667, 813
MspR9I	CCNGG	2 cut(s)	668, 685
Mva1269I	GAATGC	1 cut(s)	250
MvaI	CCWGG	1 cut(s)	685
MwoI	GCNNNNNNNGC	2 cut(s)	611, 757
NciI	CCSGG	1 cut(s)	668
NcoI	CCATGG	1 cut(s)	249
NdeII	GATC	5 cut(s)	208, 277, 595, 741, 1024
NlaIII	CATG	3 cut(s)	215, 253, 955
NlaIV	GGNNCC	2 cut(s)	171, 549
PaeR7I	CTCGAG	2 cut(s)	606, 752
PciSI	GCTCTTC	1 cut(s)	501
PctI	GAATGC	1 cut(s)	250
PflFI	GACNNNGTC	1 cut(s)	455
PkrI	GCNGC	2 cut(s)	229, 289
PleI	GAGTC	2 cut(s)	649, 795
PpsI	GAGTC	2 cut(s)	649, 795
Psp124BI	GAGCTC	2 cut(s)	607, 753
Psp6I	CCWGG	1 cut(s)	683
PspFI	CCCAGC	2 cut(s)	196, 416
PspGI	CCWGG	1 cut(s)	683
PspN4I	GGNNCC	2 cut(s)	171, 549
PstI	CTGCAG	1 cut(s)	229
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	2 cut(s)	595, 741
PsyI	GACNNNGTC	1 cut(s)	455
RsaI	GTAC	3 cut(s)	11, 619, 765
RsaNI	GTAC	3 cut(s)	10, 618, 764
SacI	GAGCTC	2 cut(s)	607, 753
SapI	GCTCTTC	1 cut(s)	501
SaqAI	TTAA	2 cut(s)	471, 507
SatI	GCNGC	2 cut(s)	228, 288
Sau3AI	GATC	5 cut(s)	208, 277, 595, 741, 1024
ScaI	AGTACT	2 cut(s)	619, 765
SchI	GAGTC	2 cut(s)	650, 796
ScrFI	CCNGG	2 cut(s)	668, 685
SduI	GDGCHC	2 cut(s)	607, 753
SfaNI	GCATC	3 cut(s)	391, 575, 998
SfcI	CTRYAG	3 cut(s)	174, 225, 708
Sfr274I	CTCGAG	2 cut(s)	606, 752
SlaI	CTCGAG	2 cut(s)	606, 752
SmlI	CTYRAG	3 cut(s)	297, 606, 752
SmoI	CTYRAG	3 cut(s)	297, 606, 752
Sse9I	AATT	8 cut(s)	66, 320, 504, 540, 656, 887, 959, 994
SsiI	CCGC	2 cut(s)	72, 287
SspMI	CTAG	1 cut(s)	369
SstI	GAGCTC	2 cut(s)	607, 753
StyD4I	CCNGG	2 cut(s)	666, 683
StyI	CCWWGG	2 cut(s)	78, 249
TaiI	ACGT	3 cut(s)	15, 130, 853
TaqI	TCGA	2 cut(s)	607, 753
TasI	AATT	8 cut(s)	66, 320, 504, 540, 656, 887, 959, 994
TatI	WGTACW	2 cut(s)	617, 763
TauI	GCSGC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	471, 507
Tru9I	TTAA	2 cut(s)	471, 507
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	414
Tth111I	GACNNNGTC	1 cut(s)	455
XapI	RAATTY	3 cut(s)	66, 540, 959
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XhoI	CTCGAG	2 cut(s)	606, 752
XspI	CTAG	1 cut(s)	369
ZrmI	AGTACT	2 cut(s)	619, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.