Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006962

Physical Location & Seq

Genomic Coordinates Forward (+)

42523312 .. 42525208

Gene Structure 1897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG255000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAGCTTCCAAGAGAAAGATTGTTTTTTATTTGCGTTTTGATCTCACTGTTAGCCTCCACAACTCCAGCCCAAGATGGTGCCTTTGATATAACAAATTCAAAAGATGGTGGGAAGCACGACACTGATATCGCCGAGATACGTACTTTTCACCTAGTGAAGTTCAAACGTGAAAGAAGAAAAGAAAACAAAGCTTTGTCTATGGAATTGTTGGCTGTGGCATATTCGTCCTGTGCAGCCAAAATGGAGGAGATTATATATAGGCTGGACCTGCTGGAATTTTCAGCCACACAGAAGTATTCTCTTGCATCTAATTCAACTTGCAATGTGGAAGAGGCTGGTGATCCATACAAGGCAGAAATGGAGGAATGCATAGATTTGATAATGGAAGAATTAGAGAAAGAGAACTATAACTACTGCATGCACCCTATCAGTGAAGTTGATCCCACAGTAGCATCCTTATCTAGAGGAGCAATTGGACTGATCTTTGTATGTTTGTGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016829 GO:0018130 GO:0019438 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034357 GO:0034641 GO:0042168 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055035 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chloroa_b-bind Ferrochelatase

Protein Analysis

168

Amino Acids

18.95

Weight (kDa)

4.81

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006962)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318611 RchiOBHm_Chr1g0341641 RchiOBHm_Chr1g0354541 RchiOBHm_Chr3g0482911 RchiOBHm_Chr5g0035021 RchiOBHm_Chr5g0047811 RchiOBHm_Chr7g0197521 RchiOBHm_Chr7g0238071
rosa_laevigata	RLG00000003316
rosa_multiflora	Rmu_sc0000448.1_g000003 Rmu_sc0003649.1_g000005
rosa_roxburghii	Rroxscaffold_2G00103970 Rroxscaffold_2G00130530 Rroxscaffold_3G00249080 Rroxscaffold_5G00352090
rosa_rugosa	Rorug04G0450500
rosa_samantha	Rh1CG095200 Rh1DG103400 Rh1DG161800 Rh2AG419500 Rh2CG633100 Rh4DG048500 Rh4DG157000 Rh6CG047200 Rh6CG255000 Rh7DG283600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	279
AccB1I	GGYRCC	1 cut(s)	80
AclWI	GGATC	2 cut(s)	338, 437
AcsI	RAATTY	2 cut(s)	97, 278
AdeI	CACNNNGTG	1 cut(s)	157
AfaI	GTAC	1 cut(s)	145
AgsI	TTSAA	3 cut(s)	102, 166, 318
AluBI	AGCT	2 cut(s)	7, 194
AluI	AGCT	2 cut(s)	7, 194
AlwI	GGATC	2 cut(s)	338, 437
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	2 cut(s)	97, 278
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	2 cut(s)	143, 353
AvaII	GGWCC	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	2 cut(s)	71, 101
BfaI	CTAG	2 cut(s)	155, 465
BfuAI	ACCTGC	1 cut(s)	279
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	82
BmsI	GCATC	2 cut(s)	317, 464
BpmI	CTGGAG	1 cut(s)	51
BsaAI	YACGTR	1 cut(s)	143
Bse3DI	GCAATG	1 cut(s)	331
BseGI	GGATG	1 cut(s)	455
BseMI	GCAATG	1 cut(s)	331
BseRI	GAGGAG	2 cut(s)	263, 483
BseXI	GCAGC	1 cut(s)	248
BsgI	GTGCAG	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	374
Bsp143I	GATC	4 cut(s)	42, 343, 442, 483
BspLI	GGNNCC	1 cut(s)	82
BspMI	ACCTGC	1 cut(s)	279
BspPI	GGATC	2 cut(s)	338, 437
BspT107I	GGYRCC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	331
BssMI	GATC	4 cut(s)	42, 343, 442, 483
Bst4CI	ACNGT	2 cut(s)	51, 451
Bst6I	CTCTTC	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	422
BstF5I	GGATG	1 cut(s)	455
BstKTI	GATC	4 cut(s)	45, 346, 445, 486
BstMBI	GATC	4 cut(s)	42, 343, 442, 483
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstNSI	RCATGY	1 cut(s)	424
BstSNI	TACGTA	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	455
BtsIMutI	CAGTG	3 cut(s)	47, 123, 439
BveI	ACCTGC	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	422
Cfr13I	GGNCC	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	1 cut(s)	421
CviJI	RGCY	9 cut(s)	7, 56, 71, 194, 215, 239, 265, 287, 338
CviKI_1	RGCY	9 cut(s)	7, 56, 71, 194, 215, 239, 265, 287, 338
CviQI	GTAC	1 cut(s)	144
DpnI	GATC	4 cut(s)	44, 345, 444, 485
DpnII	GATC	4 cut(s)	42, 343, 442, 483
DraIII	CACNNNGTG	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco105I	TACGTA	1 cut(s)	143
Eco32I	GATATC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	268
EcoRV	GATATC	1 cut(s)	130
EcoT22I	ATGCAT	1 cut(s)	374
FaeI	CATG	1 cut(s)	424
FatI	CATG	1 cut(s)	420
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	1 cut(s)	442
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	2 cut(s)	155, 465
GluI	GCNGC	1 cut(s)	237
GsuI	CTGGAG	1 cut(s)	51
Hin1II	CATG	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	192
HphI	GGTGA	2 cut(s)	143, 353
Hpy188III	TCNNGA	1 cut(s)	465
HpyCH4III	ACNGT	2 cut(s)	51, 451
HpyCH4IV	ACGT	2 cut(s)	142, 169
HpyCH4V	TGCA	6 cut(s)	236, 308, 324, 372, 420, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
HpySE526I	ACGT	2 cut(s)	142, 169
Hsp92II	CATG	1 cut(s)	424
Kzo9I	GATC	4 cut(s)	42, 343, 442, 483
LmnI	GCTCC	2 cut(s)	4, 470
LpnPI	CCDG	6 cut(s)	81, 244, 251, 260, 284, 324
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	2 cut(s)	317, 464
MaeI	CTAG	2 cut(s)	155, 465
MaeII	ACGT	2 cut(s)	142, 169
MalI	GATC	4 cut(s)	44, 345, 444, 485
MboI	GATC	4 cut(s)	42, 343, 442, 483
MboII	GAAGA	3 cut(s)	189, 344, 401
MfeI	CAATTG	1 cut(s)	474
MluCI	AATT	6 cut(s)	97, 206, 278, 313, 392, 474
MnlI	CCTC	5 cut(s)	67, 241, 328, 358, 461
Mph1103I	ATGCAT	1 cut(s)	374
MunI	CAATTG	1 cut(s)	474
Mva1269I	GAATGC	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	271
NdeII	GATC	4 cut(s)	42, 343, 442, 483
NlaIII	CATG	1 cut(s)	424
NlaIV	GGNNCC	1 cut(s)	82
NmeAIII	GCCGAG	1 cut(s)	160
NsiI	ATGCAT	1 cut(s)	374
NspI	RCATGY	1 cut(s)	424
PaeI	GCATGC	1 cut(s)	424
PctI	GAATGC	1 cut(s)	374
PkrI	GCNGC	1 cut(s)	238
Ppu21I	YACGTR	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	268
PsrI	GAACNNNNNNTAC	2 cut(s)	398, 430
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	4 cut(s)	42, 343, 442, 483
Sau96I	GGNCC	1 cut(s)	268
SetI	ASST	6 cut(s)	9, 145, 156, 172, 196, 273
SfaNI	GCATC	2 cut(s)	317, 464
SinI	GGWCC	1 cut(s)	268
SnaBI	TACGTA	1 cut(s)	143
SphI	GCATGC	1 cut(s)	424
Sse9I	AATT	6 cut(s)	97, 206, 278, 313, 392, 474
SspMI	CTAG	2 cut(s)	155, 465
TaaI	ACNGT	2 cut(s)	51, 451
TaiI	ACGT	2 cut(s)	145, 172
TasI	AATT	6 cut(s)	97, 206, 278, 313, 392, 474
TscAI	CASTG	3 cut(s)	54, 130, 439
TseI	GCWGC	1 cut(s)	236
TspRI	CASTG	3 cut(s)	54, 130, 439
VpaK11BI	GGWCC	1 cut(s)	268
XapI	RAATTY	2 cut(s)	97, 278
XbaI	TCTAGA	1 cut(s)	464
XceI	RCATGY	1 cut(s)	424
XspI	CTAG	2 cut(s)	155, 465
Zsp2I	ATGCAT	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.