Rroxscaffold_3G00249080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0006962
Physical Location & Seq
Reverse (-)
42646169 .. 42650030
3862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00249080.1

Sequence Viewer

Length: 411 bp
ATGCCCTCCTTGCTTGACGATTTTGAGTGTGGAGCTAAAGATCAAGGATTGAAGCCAACGGTGACTGATGGTTTGAGATGGTGGACGATCGTGGATCGTATTTTGGGCCGCTTTGAAGACGCAGCGGGATTGGAGATACTTTTGAAGATCAAACATGAAAGAAGAAAAGAAAACAAAGCTTTGATTATGGAATTGTTGGCTGTGGCATATTCGTCCCGTGCAGCCAAAATGGAGGAGATTATATATAGGCTGGACCTGCTGGAATTTTCAGCCACACCGAAGTATTCTCTTGCATCTAATTCAACTTGCAATGTGGAAGAGGCTGGTGATCGTGAAGTTGATCCCACAGTAGCATCCTTCTCTGGAGGAGCAATTGGACTGATCTTAGCACCGACAGTGGTTGAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.01

Weight (kDa)

4.96

Isoelectric Point (pI)

38.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 264
AciI CCGC 2 cut(s) 109, 125
AclWI GGATC 2 cut(s) 102, 335
AcsI RAATTY 1 cut(s) 263
AgsI TTSAA 4 cut(s) 52, 116, 145, 303
AluBI AGCT 2 cut(s) 35, 179
AluI AGCT 2 cut(s) 35, 179
AlwI GGATC 2 cut(s) 102, 335
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 2 cut(s) 122, 221
ApoI RAATTY 1 cut(s) 263
ArsI GACNNNNNNTTYG 2 cut(s) 55, 87
AspS9I GGNCC 2 cut(s) 106, 253
AsuHPI GGTGA 2 cut(s) 73, 338
AvaII GGWCC 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 134, 233
BccI CCATC 2 cut(s) 62, 72
BfuAI ACCTGC 1 cut(s) 264
BisI GCNGC 3 cut(s) 109, 123, 222
BlsI GCNGC 3 cut(s) 110, 124, 223
Bme18I GGWCC 1 cut(s) 253
BmgT120I GGNCC 2 cut(s) 106, 253
BmsI GCATC 2 cut(s) 302, 362
BpiI GAAGAC 1 cut(s) 123
BpmI CTGGAG 1 cut(s) 384
Bse3DI GCAATG 1 cut(s) 316
BseGI GGATG 1 cut(s) 353
BseMI GCAATG 1 cut(s) 316
BseRI GAGGAG 2 cut(s) 248, 381
BseXI GCAGC 2 cut(s) 134, 233
BsgI GTGCAG 1 cut(s) 240
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 1 cut(s) 108
BsiEI CGRYCG 1 cut(s) 90
BslFI GGGAC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 199
BsnI GGCC 1 cut(s) 108
Bsp143I GATC 7 cut(s) 40, 87, 94, 147, 328, 340, 381
BspACI CCGC 2 cut(s) 109, 125
BspANI GGCC 1 cut(s) 108
BspMI ACCTGC 1 cut(s) 264
BspPI GGATC 2 cut(s) 102, 335
BsrDI GCAATG 1 cut(s) 316
BssMI GATC 7 cut(s) 40, 87, 94, 147, 328, 340, 381
Bst4CI ACNGT 3 cut(s) 61, 349, 397
Bst6I CTCTTC 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 385
BstF5I GGATG 1 cut(s) 353
BstKTI GATC 7 cut(s) 43, 90, 97, 150, 331, 343, 384
BstMBI GATC 7 cut(s) 40, 87, 94, 147, 328, 340, 381
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 2 cut(s) 10, 256
BstV1I GCAGC 2 cut(s) 134, 233
BstV2I GAAGAC 1 cut(s) 123
BsuRI GGCC 1 cut(s) 108
BtsCI GGATG 1 cut(s) 353
BtsIMutI CAGTG 1 cut(s) 402
BveI ACCTGC 1 cut(s) 264
Cfr13I GGNCC 2 cut(s) 106, 253
CseI GACGC 1 cut(s) 128
CviAII CATG 1 cut(s) 155
CviJI RGCY 9 cut(s) 35, 55, 108, 179, 200, 224, 250, 272, 323
CviKI_1 RGCY 9 cut(s) 35, 55, 108, 179, 200, 224, 250, 272, 323
DdeI CTNAG 1 cut(s) 385
DpnI GATC 7 cut(s) 42, 89, 96, 149, 330, 342, 383
DpnII GATC 7 cut(s) 40, 87, 94, 147, 328, 340, 381
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 253
FaeI CATG 1 cut(s) 158
FaiI YATR 6 cut(s) 156, 188, 208, 242, 244, 246
FaqI GGGAC 1 cut(s) 199
FatI CATG 1 cut(s) 154
FauI CCCGC 1 cut(s) 118
Fnu4HI GCNGC 3 cut(s) 109, 123, 222
FokI GGATG 1 cut(s) 340
Fsp4HI GCNGC 3 cut(s) 109, 123, 222
GluI GCNGC 3 cut(s) 109, 123, 222
GsuI CTGGAG 1 cut(s) 384
HaeIII GGCC 1 cut(s) 108
HgaI GACGC 1 cut(s) 128
Hin1II CATG 1 cut(s) 158
HindIII AAGCTT 1 cut(s) 177
HphI GGTGA 2 cut(s) 73, 338
Hpy166II GTNNAC 1 cut(s) 84
Hpy188III TCNNGA 2 cut(s) 332, 363
Hpy8I GTNNAC 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 367
HpyCH4III ACNGT 3 cut(s) 61, 349, 397
HpyCH4V TGCA 3 cut(s) 221, 293, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 256
HpyF3I CTNAG 1 cut(s) 385
Hsp92II CATG 1 cut(s) 158
Kzo9I GATC 7 cut(s) 40, 87, 94, 147, 328, 340, 381
LmnI GCTCC 2 cut(s) 32, 368
LpnPI CCDG 5 cut(s) 236, 245, 269, 309, 348
Lsp1109I GCAGC 2 cut(s) 134, 233
LweI GCATC 2 cut(s) 302, 362
MaeIII GTNAC 1 cut(s) 61
MalI GATC 7 cut(s) 42, 89, 96, 149, 330, 342, 383
MboI GATC 7 cut(s) 40, 87, 94, 147, 328, 340, 381
MboII GAAGA 4 cut(s) 128, 157, 174, 329
MfeI CAATTG 1 cut(s) 372
MluCI AATT 4 cut(s) 191, 263, 298, 372
MnlI CCTC 4 cut(s) 16, 226, 313, 359
MspA1I CMGCKG 1 cut(s) 125
MunI CAATTG 1 cut(s) 372
MwoI GCNNNNNNNGC 2 cut(s) 10, 256
NdeII GATC 7 cut(s) 40, 87, 94, 147, 328, 340, 381
NlaIII CATG 1 cut(s) 158
NmuCI GTSAC 1 cut(s) 61
PkrI GCNGC 3 cut(s) 110, 124, 223
Ple19I CGATCG 1 cut(s) 90
PspPI GGNCC 2 cut(s) 106, 253
PvuI CGATCG 1 cut(s) 90
SatI GCNGC 3 cut(s) 109, 123, 222
Sau3AI GATC 7 cut(s) 40, 87, 94, 147, 328, 340, 381
Sau96I GGNCC 2 cut(s) 106, 253
SetI ASST 3 cut(s) 37, 181, 258
SfaNI GCATC 2 cut(s) 302, 362
SinI GGWCC 1 cut(s) 253
Sse9I AATT 4 cut(s) 191, 263, 298, 372
SsiI CCGC 2 cut(s) 109, 125
TaaI ACNGT 3 cut(s) 61, 349, 397
TasI AATT 4 cut(s) 191, 263, 298, 372
TauI GCSGC 1 cut(s) 111
TscAI CASTG 1 cut(s) 402
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 2 cut(s) 122, 221
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 1 cut(s) 171
TspRI CASTG 1 cut(s) 402
VpaK11BI GGWCC 1 cut(s) 253
XapI RAATTY 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.