Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006962

Physical Location & Seq

Genomic Coordinates Forward (+)

4664729 .. 4667795

Gene Structure 3067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG047200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTACTGGATTCCATTTTCTTTCCAAATTAGGGATTTAGTGTCAATTACTCAATATCAGTTATTGCCCTCCAACCGATTAAATCTTGGCATATTTACCTCGGATAAGAAATATGAGTTTTCGGTCCTGGTAGATCGTGCCACTGGAGGAGCTAGCATTAAAGATGGAGAACTGGAGCTCATGCTTCATAGTTGTGTAGATACTTTTCACGAAGAGAAGAGCAAACGTGAAAGAAGAAAAGAAAACAAAGCTTTGACTATGGAATTGTTGGCTGTGGCATATTCGTCCCTTGTAGCCAAAATGGAGGAGATTATATATAGGTTGGTCATGCTGGAATTTTCAGCCACACAGAAGTATTCTCTTGCATCTAATTCAACTTACAATGTGGAAGAGGCTGGTGATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006517 GO:0006807 GO:0008150 GO:0008152 GO:0009100 GO:0009987 GO:0015923 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

135

Amino Acids

15.52

Weight (kDa)

5.43

Isoelectric Point (pI)

28.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38C	PF07748	28 - 64	6.8e-06	Glycosyl hydrolases family 38 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006962)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318611 RchiOBHm_Chr1g0341641 RchiOBHm_Chr1g0354541 RchiOBHm_Chr3g0482911 RchiOBHm_Chr5g0035021 RchiOBHm_Chr5g0047811 RchiOBHm_Chr7g0197521 RchiOBHm_Chr7g0238071
rosa_laevigata	RLG00000003316
rosa_multiflora	Rmu_sc0000448.1_g000003 Rmu_sc0003649.1_g000005
rosa_roxburghii	Rroxscaffold_2G00103970 Rroxscaffold_2G00130530 Rroxscaffold_3G00249080 Rroxscaffold_5G00352090
rosa_rugosa	Rorug04G0450500
rosa_samantha	Rh1CG095200 Rh1DG103400 Rh1DG161800 Rh2AG419500 Rh2CG633100 Rh4DG048500 Rh4DG157000 Rh6CG047200 Rh6CG255000 Rh7DG283600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	335
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	375
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	3 cut(s)	152, 178, 251
AluI	AGCT	3 cut(s)	152, 178, 251
Alw21I	GWGCWC	1 cut(s)	180
ApoI	RAATTY	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	124
AsuNHI	GCTAGC	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	124
BanII	GRGCYC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	180
BccI	CCATC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	128
BfaI	CTAG	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	1 cut(s)	374
BmtI	GCTAGC	1 cut(s)	156
BpmI	CTGGAG	2 cut(s)	165, 194
BsaJI	CCNNGG	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	3 cut(s)	11, 148, 177
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseNI	ACTGG	3 cut(s)	11, 148, 177
BseRI	GAGGAG	2 cut(s)	162, 320
BsiHKAI	GWGCWC	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	133, 400
BspOI	GCTAGC	1 cut(s)	156
BspQI	GCTCTTC	1 cut(s)	212
BsrI	ACTGG	3 cut(s)	11, 148, 177
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	2 cut(s)	133, 400
Bst2UI	CCWGG	1 cut(s)	128
Bst6I	CTCTTC	3 cut(s)	207, 212, 384
BstC8I	GCNNGC	1 cut(s)	154
BstKTI	GATC	2 cut(s)	136, 403
BstMBI	GATC	2 cut(s)	133, 400
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	181, 328
CviJI	RGCY	7 cut(s)	152, 178, 251, 272, 296, 344, 395
CviKI_1	RGCY	7 cut(s)	152, 178, 251, 272, 296, 344, 395
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	2 cut(s)	135, 402
DpnII	GATC	2 cut(s)	133, 400
Eam1104I	CTCTTC	3 cut(s)	207, 212, 384
EarI	CTCTTC	3 cut(s)	207, 212, 384
Ecl136II	GAGCTC	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	180
FaeI	CATG	2 cut(s)	184, 331
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	2 cut(s)	180, 327
FriOI	GRGCYC	1 cut(s)	180
FspBI	CTAG	1 cut(s)	153
GsuI	CTGGAG	2 cut(s)	165, 194
Hin1II	CATG	2 cut(s)	184, 331
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	1 cut(s)	10
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	1 cut(s)	209
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	1 cut(s)	365
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	2 cut(s)	184, 331
Kzo9I	GATC	2 cut(s)	133, 400
LguI	GCTCTTC	1 cut(s)	212
LmnI	GCTCC	2 cut(s)	149, 175
LpnPI	CCDG	6 cut(s)	113, 129, 140, 158, 317, 381
LweI	GCATC	1 cut(s)	374
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	1 cut(s)	226
MalI	GATC	2 cut(s)	135, 402
MboI	GATC	2 cut(s)	133, 400
MboII	GAAGA	4 cut(s)	224, 229, 246, 401
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	5 cut(s)	27, 45, 263, 335, 370
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	5 cut(s)	79, 109, 140, 298, 385
MseI	TTAA	2 cut(s)	80, 159
MslI	CAYNNNNRTG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
NdeII	GATC	2 cut(s)	133, 400
NheI	GCTAGC	1 cut(s)	152
NlaIII	CATG	2 cut(s)	184, 331
PciSI	GCTCTTC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	10
Psp124BI	GAGCTC	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	124
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	192
SacI	GAGCTC	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	212
SaqAI	TTAA	2 cut(s)	80, 159
Sau3AI	GATC	2 cut(s)	133, 400
Sau96I	GGNCC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	6 cut(s)	101, 154, 180, 229, 253, 323
SfaNI	GCATC	1 cut(s)	374
SinI	GGWCC	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	192
Sse9I	AATT	5 cut(s)	27, 45, 263, 335, 370
SspMI	CTAG	1 cut(s)	153
SstI	GAGCTC	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	126
TaiI	ACGT	1 cut(s)	229
TaqII	GACCGA	1 cut(s)	112
TasI	AATT	5 cut(s)	27, 45, 263, 335, 370
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	2 cut(s)	80, 159
Tru9I	TTAA	2 cut(s)	80, 159
TscAI	CASTG	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	176
TspRI	CASTG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	1 cut(s)	335
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.