Rroxscaffold_2G00103970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006962
Physical Location & Seq
Reverse (-)
26992275 .. 26994821
2547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00103970.1

Sequence Viewer

Length: 432 bp
ATGTTCCAAAGCCACCACGTCGTTGCTCCGAGATCCGAACCCCAACTGGTCCAACCTGCCTCCAAGGAGTTTATCCTCCTCAATTGGTGCGACTTCGAGCACCAAATGCCAGCATGTAAGTCGTCGGCAAAAATGGTTTCCTTCGAGATGAATGATCGGAAAAATCCTCTTCTTCTCAGGGGTGACTTTAACAAGGGATTATTGGAGGTGTTTTTTTGTGTAGATACTTTTCACGAAGAGAAGAGCAAATGTGAAAGAAGAAAAGAAAACAAAGCTTTGACTACGGAATTGTTGGCTGTGGCATATTCGTCCCTTGTAGCCAAAATGGAGGAGATTATATATAGGTTGGTCATGCTGGAATTTTCAGCCACACAGAAGTATTCTCTTGCATCTAATTCAACTTACAATGTGGAAGAGGCTGCTGATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.46

Weight (kDa)

5.82

Isoelectric Point (pI)

50.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 64
AclWI GGATC 1 cut(s) 27
AcsI RAATTY 1 cut(s) 359
AgsI TTSAA 1 cut(s) 399
AjiI CACGTC 1 cut(s) 19
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
Alw21I GWGCWC 1 cut(s) 102
AlwI GGATC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 419
ApoI RAATTY 1 cut(s) 359
AspS9I GGNCC 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 194
AvaII GGWCC 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 406
BcgI CGANNNNNNTGC 2 cut(s) 102, 136
BfuAI ACCTGC 1 cut(s) 64
BisI GCNGC 1 cut(s) 420
BlsI GCNGC 1 cut(s) 421
Bme18I GGWCC 1 cut(s) 49
BmgBI CACGTC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 49
BmsI GCATC 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 63
Bse1I ACTGG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 190
BseNI ACTGG 1 cut(s) 51
BseRI GAGGAG 2 cut(s) 68, 344
BseXI GCAGC 1 cut(s) 406
BsiHKAI GWGCWC 1 cut(s) 102
BslFI GGGAC 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 3 cut(s) 32, 154, 424
BspCNI CTCAG 1 cut(s) 189
BspMI ACCTGC 1 cut(s) 64
BspPI GGATC 1 cut(s) 27
BspQI GCTCTTC 1 cut(s) 236
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 3 cut(s) 32, 154, 424
BssT1I CCWWGG 1 cut(s) 63
Bst6I CTCTTC 4 cut(s) 174, 231, 236, 408
BstAPI GCANNNNNTGC 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 176
BstKTI GATC 3 cut(s) 35, 157, 427
BstMBI GATC 3 cut(s) 32, 154, 424
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNSI RCATGY 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 406
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
BtrI CACGTC 1 cut(s) 19
BveI ACCTGC 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 49
CviAII CATG 2 cut(s) 114, 352
CviJI RGCY 6 cut(s) 12, 275, 296, 320, 368, 419
CviKI_1 RGCY 6 cut(s) 12, 275, 296, 320, 368, 419
DdeI CTNAG 1 cut(s) 176
DpnI GATC 3 cut(s) 34, 156, 426
DpnII GATC 3 cut(s) 32, 154, 424
Eam1104I CTCTTC 4 cut(s) 174, 231, 236, 408
EarI CTCTTC 4 cut(s) 174, 231, 236, 408
Eco130I CCWWGG 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 2 cut(s) 117, 355
FaiI YATR 6 cut(s) 115, 304, 338, 340, 342, 353
FaqI GGGAC 1 cut(s) 295
FatI CATG 2 cut(s) 113, 351
Fnu4HI GCNGC 1 cut(s) 420
Fsp4HI GCNGC 1 cut(s) 420
GluI GCNGC 1 cut(s) 420
Hin1II CATG 2 cut(s) 117, 355
HindIII AAGCTT 1 cut(s) 273
HphI GGTGA 1 cut(s) 194
Hpy188I TCNGA 3 cut(s) 30, 37, 159
Hpy188III TCNNGA 2 cut(s) 145, 233
Hpy99I CGWCG 2 cut(s) 23, 127
HpyAV CCTTC 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
HpyF3I CTNAG 1 cut(s) 176
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 2 cut(s) 117, 355
Kzo9I GATC 3 cut(s) 32, 154, 424
LguI GCTCTTC 1 cut(s) 236
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 5 cut(s) 32, 69, 123, 163, 341
Lsp1109I GCAGC 1 cut(s) 406
LweI GCATC 1 cut(s) 398
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 182
MalI GATC 3 cut(s) 34, 156, 426
MboI GATC 3 cut(s) 32, 154, 424
MboII GAAGA 6 cut(s) 161, 164, 248, 253, 270, 425
MfeI CAATTG 1 cut(s) 82
MflI RGATCY 1 cut(s) 32
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 4 cut(s) 82, 287, 359, 394
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 7 cut(s) 70, 86, 89, 177, 199, 322, 409
MseI TTAA 1 cut(s) 189
MunI CAATTG 1 cut(s) 82
MwoI GCNNNNNNNGC 1 cut(s) 106
NdeII GATC 3 cut(s) 32, 154, 424
NlaIII CATG 2 cut(s) 117, 355
NmuCI GTSAC 1 cut(s) 182
NspI RCATGY 1 cut(s) 117
PciSI GCTCTTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 421
PspPI GGNCC 1 cut(s) 49
PsuI RGATCY 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 1 cut(s) 420
Sau3AI GATC 3 cut(s) 32, 154, 424
Sau96I GGNCC 1 cut(s) 49
SduI GDGCHC 1 cut(s) 102
SetI ASST 5 cut(s) 21, 58, 210, 277, 347
SfaNI GCATC 1 cut(s) 398
SinI GGWCC 1 cut(s) 49
Sse9I AATT 4 cut(s) 82, 287, 359, 394
StyI CCWWGG 1 cut(s) 63
TaiI ACGT 1 cut(s) 21
TaqI TCGA 2 cut(s) 96, 144
TasI AATT 4 cut(s) 82, 287, 359, 394
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 419
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 164
TspGWI ACGGA 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 49
XapI RAATTY 1 cut(s) 359
XceI RCATGY 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.