Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0014866

Physical Location & Seq

Genomic Coordinates Forward (+)

16311038 .. 16313011

Gene Structure 1974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007378

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAGTTCTTTTCGTTTCAAGGGTGGCAGAGGCAAGCCCAAGGCGACCATATCCATCTCCAGGTCCTCCAAGGCCGGCCTCCAATTTCACGTCGGCCGTATCGCTCTCTTCCTCAAATCAGGCAAGTACGCCAAGCGAGTCGGCCGTCCTCAAGTATCTCGCCGCGGAGGAAAAGAAAACGAAATTGAATTAGATATAGAACGAACCCGCTGCATTCCTTGGTGTCCCCATATCCGGATTGATCAATGTGTCTTAGCTCTGAAGCTGCAATTTCCTCTGAGAAGAAAAAGAATGAGAAGGGAGGCTCTTCTAGGAAAGCTAATCCCATTCCTGACTATGTCCATGTACACAAATTCGTGTTTGCCTTCTCGGAGAAACCTGTGTGCTCTTTCGAAGGTCATTTGGATGCTGCATGTCAAATCTGCAGGCAGCATATGCAGCTGCTTTAAGAATGTGAGGCCAAGTGCAGAAGACCTGGCAGAGGATTTGGCTTTGATAGTAACCTCATGTTGGAAAGAGGATCCAAATGATCGGCCCAACTTTAGTCAAATTATACAGATGCTCATGCATTATCTCTCTACTATTTCACCGTCAAAACCTGCAATCCCCCAACGGATATTCAGATCTGATAATGTTGTACTGCCACCAGAGTCTCCCGGTACTAGTTCTTTGATGGCTACAGACAATGAATTGGGCGAAACCCCAAAAGCAGACATGGAAGAGAAGTCCAAATTTAGTGTCAGCATTGATGTTCCTGGGAAAGATACATATCATTTTCAGCCTCACCAGAGAGAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

267

Amino Acids

30.13

Weight (kDa)

9.78

Isoelectric Point (pI)

64.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014866)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007378 RLG00000013741 RLG00000014032 RLG00000023877 RLG00000029730 RLG00000032243 RLG00000032929
rosa_multiflora	Rmu_co8064554.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410470
rosa_samantha	Rh1BG141200 Rh1DG173400 Rh2AG180400 Rh5BG165700 Rh5BG464700 Rh5CG486700 Rh6BG252900
rosa_wichuraiana	Rw2G031050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	607
AccII	CGCG	1 cut(s)	165
AccIII	TCCGGA	1 cut(s)	234
AciI	CCGC	3 cut(s)	163, 165, 208
AclWI	GGATC	2 cut(s)	515, 528
AcoI	YGGCCR	2 cut(s)	94, 142
AcsI	RAATTY	2 cut(s)	352, 731
AcuI	CTGAAG	1 cut(s)	281
AfaI	GTAC	4 cut(s)	128, 347, 639, 661
AfiI	CCNNNNNNNGG	4 cut(s)	60, 234, 481, 510
AgsI	TTSAA	2 cut(s)	19, 188
AhlI	ACTAGT	1 cut(s)	662
AjiI	CACGTC	1 cut(s)	91
AjnI	CCWGG	3 cut(s)	59, 474, 754
AluBI	AGCT	4 cut(s)	257, 265, 319, 441
AluI	AGCT	4 cut(s)	257, 265, 319, 441
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	657
AlwI	GGATC	2 cut(s)	515, 528
Aor13HI	TCCGGA	1 cut(s)	234
AoxI	GGCC	6 cut(s)	72, 76, 94, 142, 458, 533
ApeKI	GCWGC	6 cut(s)	210, 265, 409, 429, 438, 441
ApoI	RAATTY	2 cut(s)	352, 731
ArsI	GACNNNNNNTTYG	2 cut(s)	723, 755
AspS9I	GGNCC	2 cut(s)	63, 534
AsuC2I	CCSGG	1 cut(s)	657
AsuHPI	GGTGA	2 cut(s)	579, 776
AsuII	TTCGAA	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	63
BamHI	GGATCC	1 cut(s)	520
BbsI	GAAGAC	1 cut(s)	477
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	6 cut(s)	197, 252, 396, 428, 441, 450
BccI	CCATC	2 cut(s)	62, 667
BceAI	ACGGC	2 cut(s)	81, 129
BcgI	CGANNNNNNTGC	2 cut(s)	192, 226
BciT130I	CCWGG	3 cut(s)	61, 476, 756
BclI	TGATCA	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	657
BcoDI	GTCTC	1 cut(s)	657
BcuI	ACTAGT	1 cut(s)	662
BfaI	CTAG	2 cut(s)	311, 663
BfmI	CTRYAG	2 cut(s)	423, 678
BfuAI	ACCTGC	1 cut(s)	607
BglII	AGATCT	1 cut(s)	623
BisI	GCNGC	7 cut(s)	163, 211, 266, 410, 430, 439, 442
BlsI	GCNGC	7 cut(s)	164, 212, 267, 411, 431, 440, 443
Bme1390I	CCNGG	4 cut(s)	61, 476, 657, 756
Bme18I	GGWCC	1 cut(s)	63
BmgBI	CACGTC	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	63, 534
BmiI	GGNNCC	1 cut(s)	522
BmrFI	CCNGG	4 cut(s)	61, 476, 657, 756
BmsI	GCATC	2 cut(s)	396, 549
BpiI	GAAGAC	1 cut(s)	477
BpmI	CTGGAG	1 cut(s)	43
Bpu14I	TTCGAA	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	657
BsaBI	GATNNNNATC	1 cut(s)	768
BsaJI	CCNNGG	5 cut(s)	39, 69, 163, 218, 755
BsaWI	WCCGGW	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 234, 481, 510
Bse118I	RCCGGY	1 cut(s)	74
Bse8I	GATNNNNATC	1 cut(s)	768
BseAI	TCCGGA	1 cut(s)	234
BseBI	CCWGG	3 cut(s)	61, 476, 756
BseDI	CCNNGG	5 cut(s)	39, 69, 163, 218, 755
BseGI	GGATG	1 cut(s)	411
BseJI	GATNNNNATC	1 cut(s)	768
BseLI	CCNNNNNNNGG	4 cut(s)	60, 234, 481, 510
BseMII	CTCAG	1 cut(s)	269
BseX3I	CGGCCG	2 cut(s)	94, 142
BseXI	GCAGC	6 cut(s)	197, 252, 396, 428, 441, 450
BsgI	GTGCAG	1 cut(s)	486
Bsh1236I	CGCG	1 cut(s)	165
Bsh1285I	CGRYCG	2 cut(s)	97, 145
BshFI	GGCC	6 cut(s)	74, 78, 96, 144, 460, 535
BsiEI	CGRYCG	2 cut(s)	97, 145
BsiHKAI	GWGCWC	1 cut(s)	388
BsiSI	CCGG	3 cut(s)	75, 235, 657
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	4 cut(s)	60, 234, 481, 510
BsmAI	GTCTC	1 cut(s)	657
BsmFI	GGGAC	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	6 cut(s)	74, 78, 96, 144, 460, 535
Bsp119I	TTCGAA	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp13I	TCCGGA	1 cut(s)	234
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	4 cut(s)	241, 520, 529, 623
BspACI	CCGC	3 cut(s)	163, 165, 208
BspANI	GGCC	6 cut(s)	74, 78, 96, 144, 460, 535
BspCNI	CTCAG	1 cut(s)	270
BspEI	TCCGGA	1 cut(s)	234
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	522
BspMAI	CTGCAG	1 cut(s)	427
BspMI	ACCTGC	1 cut(s)	607
BspPI	GGATC	2 cut(s)	515, 528
BspQI	GCTCTTC	1 cut(s)	312
BspT104I	TTCGAA	1 cut(s)	392
BsrFI	RCCGGY	1 cut(s)	74
BsrGI	TGTACA	1 cut(s)	345
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	5 cut(s)	39, 69, 163, 218, 755
BssMI	GATC	4 cut(s)	241, 520, 529, 623
BssT1I	CCWWGG	3 cut(s)	39, 69, 218
Bst2UI	CCWGG	3 cut(s)	61, 476, 756
Bst4CI	ACNGT	1 cut(s)	591
Bst6I	CTCTTC	3 cut(s)	113, 312, 714
BstAPI	GCANNNNNTGC	1 cut(s)	435
BstAUI	TGTACA	1 cut(s)	345
BstBI	TTCGAA	1 cut(s)	392
BstC8I	GCNNGC	3 cut(s)	35, 76, 427
BstDEI	CTNAG	2 cut(s)	253, 278
BstDSI	CCRYGG	1 cut(s)	163
BstENI	CCTNNNNNAGG	1 cut(s)	479
BstF5I	GGATG	1 cut(s)	411
BstFNI	CGCG	1 cut(s)	165
BstKTI	GATC	4 cut(s)	244, 523, 532, 626
BstMAI	GTCTC	1 cut(s)	657
BstMBI	GATC	4 cut(s)	241, 520, 529, 623
BstMCI	CGRYCG	2 cut(s)	97, 145
BstMWI	GCNNNNNNNGC	2 cut(s)	435, 438
BstNI	CCWGG	3 cut(s)	61, 476, 756
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	4 cut(s)	59, 474, 655, 754
BstSFI	CTRYAG	2 cut(s)	423, 678
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	6 cut(s)	197, 252, 396, 428, 441, 450
BstV2I	GAAGAC	1 cut(s)	477
BstX2I	RGATCY	2 cut(s)	520, 623
BstYI	RGATCY	2 cut(s)	520, 623
BstZI	CGGCCG	2 cut(s)	94, 142
BsuRI	GGCC	6 cut(s)	74, 78, 96, 144, 460, 535
BtgI	CCRYGG	1 cut(s)	163
BtrI	CACGTC	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	411
BveI	ACCTGC	1 cut(s)	607
Cac8I	GCNNGC	3 cut(s)	35, 76, 427
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	63, 534
Cfr42I	CCGCGG	1 cut(s)	166
Csp6I	GTAC	4 cut(s)	127, 346, 638, 660
CviAII	CATG	5 cut(s)	343, 413, 507, 565, 715
CviQI	GTAC	4 cut(s)	127, 346, 638, 660
DdeI	CTNAG	2 cut(s)	253, 278
DpnI	GATC	4 cut(s)	243, 522, 531, 625
DpnII	GATC	4 cut(s)	241, 520, 529, 623
EaeI	YGGCCR	2 cut(s)	94, 142
EagI	CGGCCG	2 cut(s)	94, 142
Eam1104I	CTCTTC	3 cut(s)	113, 312, 714
EarI	CTCTTC	3 cut(s)	113, 312, 714
EclXI	CGGCCG	2 cut(s)	94, 142
Eco130I	CCWWGG	3 cut(s)	39, 69, 218
Eco47I	GGWCC	1 cut(s)	63
Eco52I	CGGCCG	2 cut(s)	94, 142
Eco57I	CTGAAG	1 cut(s)	281
EcoNI	CCTNNNNNAGG	1 cut(s)	479
EcoO109I	RGGNCCY	1 cut(s)	63
EcoRII	CCWGG	3 cut(s)	59, 474, 754
EcoT14I	CCWWGG	3 cut(s)	39, 69, 218
EcoT22I	ATGCAT	1 cut(s)	570
ErhI	CCWWGG	3 cut(s)	39, 69, 218
FaeI	CATG	5 cut(s)	346, 416, 510, 568, 718
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	5 cut(s)	342, 412, 506, 564, 714
FauI	CCCGC	1 cut(s)	215
FauNDI	CATATG	1 cut(s)	434
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	7 cut(s)	163, 211, 266, 410, 430, 439, 442
FokI	GGATG	1 cut(s)	418
FseI	GGCCGGCC	1 cut(s)	78
Fsp4HI	GCNGC	7 cut(s)	163, 211, 266, 410, 430, 439, 442
FspBI	CTAG	2 cut(s)	311, 663
GluI	GCNGC	7 cut(s)	163, 211, 266, 410, 430, 439, 442
GsuI	CTGGAG	1 cut(s)	43
HaeIII	GGCC	6 cut(s)	74, 78, 96, 144, 460, 535
HapII	CCGG	3 cut(s)	75, 235, 657
Hin1II	CATG	5 cut(s)	346, 416, 510, 568, 718
HinfI	GANTC	2 cut(s)	138, 650
HpaII	CCGG	3 cut(s)	75, 235, 657
HphI	GGTGA	2 cut(s)	579, 776
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	5 cut(s)	261, 279, 372, 623, 628
Hpy188III	TCNNGA	2 cut(s)	235, 331
Hpy8I	GTNNAC	1 cut(s)	348
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	3 cut(s)	291, 375, 388
HpyCH4III	ACNGT	1 cut(s)	591
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	8 cut(s)	213, 268, 412, 425, 438, 467, 568, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	435, 438
HpyF3I	CTNAG	2 cut(s)	253, 278
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	5 cut(s)	346, 416, 510, 568, 718
Kpn2I	TCCGGA	1 cut(s)	234
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Ksp22I	TGATCA	1 cut(s)	241
KspI	CCGCGG	1 cut(s)	166
Kzo9I	GATC	4 cut(s)	241, 520, 529, 623
LguI	GCTCTTC	1 cut(s)	312
Lsp1109I	GCAGC	6 cut(s)	197, 252, 396, 428, 441, 450
LweI	GCATC	2 cut(s)	396, 549
MaeI	CTAG	2 cut(s)	311, 663
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	4 cut(s)	243, 522, 531, 625
MboI	GATC	4 cut(s)	241, 520, 529, 623
MboII	GAAGA	5 cut(s)	100, 294, 299, 482, 731
MflI	RGATCY	2 cut(s)	520, 623
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	8 cut(s)	83, 183, 188, 269, 352, 549, 689, 731
MlyI	GAGTC	2 cut(s)	147, 659
MmeI	TCCRAC	1 cut(s)	491
Mph1103I	ATGCAT	1 cut(s)	570
MroI	TCCGGA	1 cut(s)	234
MroNI	GCCGGC	1 cut(s)	74
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	1 cut(s)	404
MspA1I	CMGCKG	3 cut(s)	165, 210, 441
MspI	CCGG	3 cut(s)	75, 235, 657
MspR9I	CCNGG	4 cut(s)	61, 476, 657, 756
Mva1269I	GAATGC	1 cut(s)	213
MvaI	CCWGG	3 cut(s)	61, 476, 756
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	435, 438
NaeI	GCCGGC	1 cut(s)	76
NciI	CCSGG	1 cut(s)	657
NdeI	CATATG	1 cut(s)	434
NdeII	GATC	4 cut(s)	241, 520, 529, 623
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	5 cut(s)	346, 416, 510, 568, 718
NlaIV	GGNNCC	1 cut(s)	522
NsiI	ATGCAT	1 cut(s)	570
NspI	RCATGY	1 cut(s)	416
NspV	TTCGAA	1 cut(s)	392
PciSI	GCTCTTC	1 cut(s)	312
PctI	GAATGC	1 cut(s)	213
PdiI	GCCGGC	1 cut(s)	76
PflFI	GACNNNGTC	1 cut(s)	337
PkrI	GCNGC	7 cut(s)	164, 212, 267, 411, 431, 440, 443
PleI	GAGTC	2 cut(s)	146, 658
PpsI	GAGTC	2 cut(s)	146, 658
PpuMI	RGGWCCY	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	63
Psp6I	CCWGG	3 cut(s)	59, 474, 754
PspGI	CCWGG	3 cut(s)	59, 474, 754
PspN4I	GGNNCC	1 cut(s)	522
PspPI	GGNCC	2 cut(s)	63, 534
PspPPI	RGGWCCY	1 cut(s)	63
PstI	CTGCAG	1 cut(s)	427
PsuI	RGATCY	2 cut(s)	520, 623
PsyI	GACNNNGTC	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	441
RigI	GGCCGGCC	1 cut(s)	78
RsaI	GTAC	4 cut(s)	128, 347, 639, 661
RsaNI	GTAC	4 cut(s)	127, 346, 638, 660
RseI	CAYNNNNRTG	1 cut(s)	404
SacII	CCGCGG	1 cut(s)	166
SapI	GCTCTTC	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	7 cut(s)	163, 211, 266, 410, 430, 439, 442
Sau3AI	GATC	4 cut(s)	241, 520, 529, 623
Sau96I	GGNCC	2 cut(s)	63, 534
SchI	GAGTC	2 cut(s)	147, 659
ScrFI	CCNGG	4 cut(s)	61, 476, 657, 756
SduI	GDGCHC	1 cut(s)	388
SfaNI	GCATC	2 cut(s)	396, 549
SfcI	CTRYAG	2 cut(s)	423, 678
Sfr303I	CCGCGG	1 cut(s)	166
SfuI	TTCGAA	1 cut(s)	392
SgrBI	CCGCGG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
SpeI	ACTAGT	1 cut(s)	662
Sse9I	AATT	8 cut(s)	83, 183, 188, 269, 352, 549, 689, 731
SsiI	CCGC	3 cut(s)	163, 165, 208
SspMI	CTAG	2 cut(s)	311, 663
StyD4I	CCNGG	4 cut(s)	59, 474, 655, 754
StyI	CCWWGG	3 cut(s)	39, 69, 218
TaaI	ACNGT	1 cut(s)	591
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	392
TasI	AATT	8 cut(s)	83, 183, 188, 269, 352, 549, 689, 731
TatI	WGTACW	2 cut(s)	345, 637
TauI	GCSGC	1 cut(s)	165
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TseI	GCWGC	6 cut(s)	210, 265, 409, 429, 438, 441
TspDTI	ATGAA	1 cut(s)	702
TspGWI	ACGGA	1 cut(s)	628
Tth111I	GACNNNGTC	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	63
XagI	CCTNNNNNAGG	1 cut(s)	479
XapI	RAATTY	2 cut(s)	352, 731
XceI	RCATGY	1 cut(s)	416
XspI	CTAG	2 cut(s)	311, 663
Zsp2I	ATGCAT	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.