Rh2AG180400

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0014866
Physical Location & Seq
Forward (+)
17295521 .. 17297393
1873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG180400.1

Sequence Viewer

Length: 363 bp
ATGAGCTTCACAATACGGGGTTCTATTCCTAGTGAAACAATGAATATGGTGGCAGAGGCAAGCCCAAGGCCACCATATCTGTCTCCAGGTCCTCCAAGGTCGGCCTCCAATTTCACGTCGGCCGTATTGCTCTCTTCCTCAAATCAGGCAAGTACACCAAGCGAGTCGGCCGTCCTCAAGTATCTCGCCGCTGAGAAAAAGAAGGGGAAGGGAGGCTCTTCTAGGAAAGCTAATCCCATTCCTGACTATGTCCATGTACACGAATTCGTGTTTGCCCTCTCGGAGAAACCTGTGTGCTCTTTCGAAGGTCATTTGGATGCTGTACTGGACCTATCATGGTCCAGAGATCAGACCATAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

120

Amino Acids

12.92

Weight (kDa)

8.79

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 189
AcoI YGGCCR 2 cut(s) 120, 168
AcsI RAATTY 1 cut(s) 263
AfaI GTAC 3 cut(s) 154, 258, 324
AjiI CACGTC 1 cut(s) 117
AjnI CCWGG 1 cut(s) 85
AluBI AGCT 2 cut(s) 6, 230
AluI AGCT 2 cut(s) 6, 230
Alw21I GWGCWC 1 cut(s) 299
Alw26I GTCTC 1 cut(s) 87
AoxI GGCC 4 cut(s) 68, 102, 120, 168
ApoI RAATTY 1 cut(s) 263
AspS9I GGNCC 3 cut(s) 89, 328, 339
AsuII TTCGAA 1 cut(s) 303
AvaII GGWCC 3 cut(s) 89, 328, 339
Bbv12I GWGCWC 1 cut(s) 299
BceAI ACGGC 2 cut(s) 107, 155
BciT130I CCWGG 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 2 cut(s) 30, 222
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 1 cut(s) 87
Bme18I GGWCC 3 cut(s) 89, 328, 339
BmgBI CACGTC 1 cut(s) 117
BmgT120I GGNCC 3 cut(s) 89, 328, 339
BmrFI CCNGG 1 cut(s) 87
BmsI GCATC 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 65, 95
Bse1I ACTGG 1 cut(s) 330
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 2 cut(s) 65, 95
BseGI GGATG 1 cut(s) 322
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 330
BseX3I CGGCCG 2 cut(s) 120, 168
Bsh1285I CGRYCG 2 cut(s) 123, 171
BshFI GGCC 4 cut(s) 70, 104, 122, 170
BsiEI CGRYCG 2 cut(s) 123, 171
BsiHKAI GWGCWC 1 cut(s) 299
BsmAI GTCTC 1 cut(s) 87
BsnI GGCC 4 cut(s) 70, 104, 122, 170
Bsp119I TTCGAA 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 299
Bsp1407I TGTACA 1 cut(s) 256
Bsp143I GATC 1 cut(s) 346
BspACI CCGC 1 cut(s) 189
BspANI GGCC 4 cut(s) 70, 104, 122, 170
BspCNI CTCAG 1 cut(s) 184
BspQI GCTCTTC 1 cut(s) 223
BspT104I TTCGAA 1 cut(s) 303
BsrGI TGTACA 1 cut(s) 256
BsrI ACTGG 1 cut(s) 330
BssECI CCNNGG 2 cut(s) 65, 95
BssMI GATC 1 cut(s) 346
BssT1I CCWWGG 2 cut(s) 65, 95
Bst2UI CCWGG 1 cut(s) 87
Bst6I CTCTTC 2 cut(s) 139, 223
BstAUI TGTACA 1 cut(s) 256
BstBI TTCGAA 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 1 cut(s) 349
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 1 cut(s) 346
BstMCI CGRYCG 2 cut(s) 123, 171
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 85
BstZI CGGCCG 2 cut(s) 120, 168
BsuRI GGCC 4 cut(s) 70, 104, 122, 170
BtrI CACGTC 1 cut(s) 117
BtsCI GGATG 1 cut(s) 322
Cac8I GCNNGC 1 cut(s) 61
Cfr13I GGNCC 3 cut(s) 89, 328, 339
Csp6I GTAC 3 cut(s) 153, 257, 323
CviAII CATG 2 cut(s) 254, 336
CviJI RGCY 8 cut(s) 6, 63, 70, 104, 122, 170, 216, 230
CviKI_1 RGCY 8 cut(s) 6, 63, 70, 104, 122, 170, 216, 230
CviQI GTAC 3 cut(s) 153, 257, 323
DdeI CTNAG 1 cut(s) 192
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
EaeI YGGCCR 2 cut(s) 120, 168
EagI CGGCCG 2 cut(s) 120, 168
Eam1104I CTCTTC 2 cut(s) 139, 223
EarI CTCTTC 2 cut(s) 139, 223
EclXI CGGCCG 2 cut(s) 120, 168
Eco130I CCWWGG 2 cut(s) 65, 95
Eco47I GGWCC 3 cut(s) 89, 328, 339
Eco52I CGGCCG 2 cut(s) 120, 168
EcoO109I RGGNCCY 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 85
EcoT14I CCWWGG 2 cut(s) 65, 95
ErhI CCWWGG 2 cut(s) 65, 95
FaeI CATG 2 cut(s) 257, 339
FaiI YATR 6 cut(s) 47, 76, 249, 255, 337, 356
FatI CATG 2 cut(s) 253, 335
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 2 cut(s) 30, 222
GluI GCNGC 1 cut(s) 189
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 4 cut(s) 70, 104, 122, 170
Hin1II CATG 2 cut(s) 257, 339
HinfI GANTC 1 cut(s) 164
Hpy166II GTNNAC 2 cut(s) 155, 259
Hpy188I TCNGA 2 cut(s) 283, 351
Hpy188III TCNNGA 2 cut(s) 242, 342
Hpy8I GTNNAC 2 cut(s) 155, 259
Hpy99I CGWCG 1 cut(s) 121
HpyAV CCTTC 3 cut(s) 196, 202, 299
HpyCH4IV ACGT 1 cut(s) 116
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 2 cut(s) 257, 339
Kzo9I GATC 1 cut(s) 346
LguI GCTCTTC 1 cut(s) 223
LpnPI CCDG 7 cut(s) 72, 99, 131, 255, 303, 311, 355
LweI GCATC 1 cut(s) 307
MaeI CTAG 2 cut(s) 30, 222
MaeII ACGT 1 cut(s) 116
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 2 cut(s) 126, 210
MhlI GDGCHC 1 cut(s) 299
MluCI AATT 2 cut(s) 109, 263
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 7 cut(s) 49, 102, 115, 148, 185, 206, 287
MslI CAYNNNNRTG 1 cut(s) 315
MspA1I CMGCKG 1 cut(s) 191
MspR9I CCNGG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 87
NdeII GATC 1 cut(s) 346
NlaIII CATG 2 cut(s) 257, 339
NspV TTCGAA 1 cut(s) 303
PciSI GCTCTTC 1 cut(s) 223
PflFI GACNNNGTC 1 cut(s) 248
PkrI GCNGC 1 cut(s) 190
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
PpuMI RGGWCCY 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
PspPI GGNCC 3 cut(s) 89, 328, 339
PspPPI RGGWCCY 1 cut(s) 89
PsyI GACNNNGTC 1 cut(s) 248
RsaI GTAC 3 cut(s) 154, 258, 324
RsaNI GTAC 3 cut(s) 153, 257, 323
RseI CAYNNNNRTG 1 cut(s) 315
SapI GCTCTTC 1 cut(s) 223
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 1 cut(s) 346
Sau96I GGNCC 3 cut(s) 89, 328, 339
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 87
SduI GDGCHC 1 cut(s) 299
SetI ASST 8 cut(s) 8, 91, 101, 119, 232, 292, 310, 333
SfaNI GCATC 1 cut(s) 307
SfuI TTCGAA 1 cut(s) 303
SinI GGWCC 3 cut(s) 89, 328, 339
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 2 cut(s) 109, 263
SsiI CCGC 1 cut(s) 189
SspMI CTAG 2 cut(s) 30, 222
StyD4I CCNGG 1 cut(s) 85
StyI CCWWGG 2 cut(s) 65, 95
TaiI ACGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 303
TasI AATT 2 cut(s) 109, 263
TatI WGTACW 3 cut(s) 152, 256, 322
TauI GCSGC 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 56
Tth111I GACNNNGTC 1 cut(s) 248
VpaK11BI GGWCC 3 cut(s) 89, 328, 339
XapI RAATTY 1 cut(s) 263
XspI CTAG 2 cut(s) 30, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.