RLG00000023877

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0014866
Physical Location & Seq
Forward (+)
29423191 .. 29423964
774 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023877

Sequence Viewer

Length: 333 bp
ATGTGTCTTAGCTCTGAAGCTGCAATTTCCTCTGAGAAGAAAAAGAAGGGGAATGGAGGCTCTTCTAGGAAAGCTAATCCCATTCCTGACTATGTCCATGTACACGAATTCGTGTTTGCCCTCTCGGAGAAACCTTTGTGCTCTTTCGAAGGTCATTTGGATGTTGTACTAGACCTATCATGGTTCAGAGATCAGCTACTGCTTTCATCTTCAATGGAGAAAACTATTAGATTATGGGATATGGTGACCAAGAGTTGTTTTAAAATGTTTGCCCACAATGATTATGACCATAAAACAGTTAAACTTGCGGTGGGATGGAGCTGGAGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

111

Amino Acids

12.58

Weight (kDa)

8.47

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_1st PF25173 41 - 94 2e-08 WDR3 first beta-propeller domain
WD40 PF00400 44 - 80 6.3e-06 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 46 - 93 2e-06 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 47 - 93 4.9e-06 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 308
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 2 cut(s) 102, 168
AgsI TTSAA 1 cut(s) 213
AluBI AGCT 5 cut(s) 12, 20, 74, 196, 321
AluI AGCT 5 cut(s) 12, 20, 74, 196, 321
Alw21I GWGCWC 1 cut(s) 143
AlwNI CAGNNNCTG 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 256
AsuII TTCGAA 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 7
BccI CCATC 1 cut(s) 309
BfaI CTAG 2 cut(s) 66, 170
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bpu14I TTCGAA 1 cut(s) 147
BseGI GGATG 2 cut(s) 166, 320
BseMII CTCAG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 143
Bsp119I TTCGAA 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 143
Bsp1407I TGTACA 1 cut(s) 100
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 308
BspCNI CTCAG 1 cut(s) 25
BspQI GCTCTTC 1 cut(s) 67
BspT104I TTCGAA 1 cut(s) 147
BsrGI TGTACA 1 cut(s) 100
BssMI GATC 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 298
Bst6I CTCTTC 1 cut(s) 67
BstAUI TGTACA 1 cut(s) 100
BstBI TTCGAA 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 8, 33
BstEII GGTNACC 1 cut(s) 244
BstF5I GGATG 2 cut(s) 166, 320
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstPI GGTNACC 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 7
BtsCI GGATG 2 cut(s) 166, 320
CaiI CAGNNNCTG 1 cut(s) 199
Csp6I GTAC 2 cut(s) 101, 167
CviAII CATG 2 cut(s) 98, 180
CviJI RGCY 6 cut(s) 12, 20, 60, 74, 196, 321
CviKI_1 RGCY 6 cut(s) 12, 20, 60, 74, 196, 321
CviQI GTAC 2 cut(s) 101, 167
DdeI CTNAG 2 cut(s) 8, 33
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
DraI TTTAAA 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 36
Eco91I GGTNACC 1 cut(s) 244
EcoO65I GGTNACC 1 cut(s) 244
EcoRI GAATTC 1 cut(s) 107
FaeI CATG 2 cut(s) 101, 183
FaiI YATR 7 cut(s) 93, 99, 181, 235, 242, 285, 291
FatI CATG 2 cut(s) 97, 179
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 2 cut(s) 173, 327
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 2 cut(s) 66, 170
GluI GCNGC 1 cut(s) 21
Hin1II CATG 2 cut(s) 101, 183
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 4 cut(s) 16, 34, 127, 188
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 2 cut(s) 40, 143
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 1 cut(s) 23
HpyF3I CTNAG 2 cut(s) 8, 33
Hsp92II CATG 2 cut(s) 101, 183
Kzo9I GATC 1 cut(s) 190
LguI GCTCTTC 1 cut(s) 67
LmnI GCTCC 1 cut(s) 318
LpnPI CCDG 2 cut(s) 99, 307
Lsp1109I GCAGC 1 cut(s) 7
MaeI CTAG 2 cut(s) 66, 170
MaeIII GTNAC 1 cut(s) 244
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 3 cut(s) 49, 54, 201
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 2 cut(s) 24, 107
MnlI CCTC 3 cut(s) 40, 50, 131
MseI TTAA 2 cut(s) 261, 300
MslI CAYNNNNRTG 1 cut(s) 159
NdeII GATC 1 cut(s) 190
NlaIII CATG 2 cut(s) 101, 183
NmuCI GTSAC 1 cut(s) 244
NspV TTCGAA 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 67
PflFI GACNNNGTC 1 cut(s) 92
PkrI GCNGC 1 cut(s) 22
PspEI GGTNACC 1 cut(s) 244
PstNI CAGNNNCTG 1 cut(s) 199
PsyI GACNNNGTC 1 cut(s) 92
RsaI GTAC 2 cut(s) 102, 168
RsaNI GTAC 2 cut(s) 101, 167
RseI CAYNNNNRTG 1 cut(s) 159
SapI GCTCTTC 1 cut(s) 67
SaqAI TTAA 2 cut(s) 261, 300
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 1 cut(s) 190
SduI GDGCHC 1 cut(s) 143
SetI ASST 8 cut(s) 14, 22, 76, 136, 154, 177, 198, 323
SfuI TTCGAA 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 159
Sse9I AATT 2 cut(s) 24, 107
SsiI CCGC 1 cut(s) 308
SspMI CTAG 2 cut(s) 66, 170
TaaI ACNGT 1 cut(s) 298
TaqI TCGA 1 cut(s) 147
TasI AATT 2 cut(s) 24, 107
TatI WGTACW 2 cut(s) 100, 166
Tru1I TTAA 2 cut(s) 261, 300
Tru9I TTAA 2 cut(s) 261, 300
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 1 cut(s) 195
Tth111I GACNNNGTC 1 cut(s) 92
XapI RAATTY 1 cut(s) 107
XspI CTAG 2 cut(s) 66, 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.