Rroxscaffold_6G00410470

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0014866
Physical Location & Seq
Forward (+)
32899289 .. 32901446
2158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00410470.1

Sequence Viewer

Length: 354 bp
ATGTGTCTTAGCTCTGAAGCTGCAATTTCCTCGGAGAAGAAAAAGAAGGGGAAGGGAGACTCTTCTAGGAAAGCTAATCCCATTCCTGACTATGTCCATGTACACGAATTCGTGTTTGCCCTCACGGAGAAACCTGTGTGCTCTTTCGAAGGTCATTTGGATGGTGTACTGGACCTATCATGGTCCAGAGATCAGCTACTGCTTTCATCTTCAATGGACAAAACTATTAGATTATGTGATATGGTGACCAAGAGTTGTTTAAAAATGTTTGCCCACAATGATTATGAGAACTTGATTTTGACTACAGACCATAAAACAGTTAAAATTGCGGTGGGATGGAGCTGGAGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

117

Amino Acids

13.21

Weight (kDa)

7.7

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_1st PF25173 42 - 109 4.3e-07 WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 42 - 93 6.2e-06 WDR36/Utp21 second beta-propeller domain
WD40 PF00400 44 - 80 4.4e-07 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 44 - 94 7.6e-08 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 47 - 112 7.6e-07 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 329
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 2 cut(s) 102, 168
AgsI TTSAA 1 cut(s) 213
AluBI AGCT 5 cut(s) 12, 20, 74, 196, 342
AluI AGCT 5 cut(s) 12, 20, 74, 196, 342
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 51
AlwNI CAGNNNCTG 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 172, 183
AsuHPI GGTGA 1 cut(s) 256
AsuII TTCGAA 1 cut(s) 147
AvaII GGWCC 2 cut(s) 172, 183
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 7
BccI CCATC 2 cut(s) 155, 330
BcgI CGANNNNNNTGC 2 cut(s) 12, 46
BcoDI GTCTC 1 cut(s) 51
BfaI CTAG 1 cut(s) 66
BfmI CTRYAG 1 cut(s) 303
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme18I GGWCC 2 cut(s) 172, 183
BmgT120I GGNCC 2 cut(s) 172, 183
Bpu14I TTCGAA 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 2 cut(s) 166, 341
BseNI ACTGG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 51
Bsp119I TTCGAA 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 143
Bsp1407I TGTACA 1 cut(s) 100
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 329
BspT104I TTCGAA 1 cut(s) 147
BsrGI TGTACA 1 cut(s) 100
BsrI ACTGG 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 67
BstAUI TGTACA 1 cut(s) 100
BstBI TTCGAA 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 8
BstEII GGTNACC 1 cut(s) 244
BstF5I GGATG 2 cut(s) 166, 341
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 1 cut(s) 190
BstPI GGTNACC 1 cut(s) 244
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 7
BtsCI GGATG 2 cut(s) 166, 341
CaiI CAGNNNCTG 1 cut(s) 199
Cfr13I GGNCC 2 cut(s) 172, 183
Csp6I GTAC 2 cut(s) 101, 167
CviAII CATG 2 cut(s) 98, 180
CviJI RGCY 5 cut(s) 12, 20, 74, 196, 342
CviKI_1 RGCY 5 cut(s) 12, 20, 74, 196, 342
CviQI GTAC 2 cut(s) 101, 167
DdeI CTNAG 1 cut(s) 8
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
DraI TTTAAA 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
Eco47I GGWCC 2 cut(s) 172, 183
Eco57I CTGAAG 1 cut(s) 36
Eco91I GGTNACC 1 cut(s) 244
EcoO65I GGTNACC 1 cut(s) 244
EcoRI GAATTC 1 cut(s) 107
FaeI CATG 2 cut(s) 101, 183
FaiI YATR 7 cut(s) 93, 99, 181, 235, 242, 285, 312
FatI CATG 2 cut(s) 97, 179
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 2 cut(s) 173, 348
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 1 cut(s) 66
GluI GCNGC 1 cut(s) 21
Hin1II CATG 2 cut(s) 101, 183
HinfI GANTC 1 cut(s) 59
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 2 cut(s) 103, 167
Hpy188I TCNGA 2 cut(s) 16, 34
Hpy188III TCNNGA 2 cut(s) 86, 186
Hpy8I GTNNAC 2 cut(s) 103, 167
HpyAV CCTTC 3 cut(s) 40, 46, 143
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 8
Hsp92II CATG 2 cut(s) 101, 183
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 339
LpnPI CCDG 5 cut(s) 99, 147, 155, 199, 328
Lsp1109I GCAGC 1 cut(s) 7
MaeI CTAG 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 244
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 3 cut(s) 49, 54, 201
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 3 cut(s) 24, 107, 324
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 2 cut(s) 40, 131
MseI TTAA 2 cut(s) 260, 321
MslI CAYNNNNRTG 1 cut(s) 159
NdeII GATC 1 cut(s) 190
NlaIII CATG 2 cut(s) 101, 183
NmuCI GTSAC 1 cut(s) 244
NspV TTCGAA 1 cut(s) 147
PflFI GACNNNGTC 1 cut(s) 92
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PspEI GGTNACC 1 cut(s) 244
PspPI GGNCC 2 cut(s) 172, 183
PstNI CAGNNNCTG 1 cut(s) 199
PsyI GACNNNGTC 1 cut(s) 92
RsaI GTAC 2 cut(s) 102, 168
RsaNI GTAC 2 cut(s) 101, 167
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 2 cut(s) 260, 321
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 2 cut(s) 172, 183
SchI GAGTC 1 cut(s) 53
SduI GDGCHC 1 cut(s) 143
SetI ASST 8 cut(s) 14, 22, 76, 136, 154, 177, 198, 344
SfcI CTRYAG 1 cut(s) 303
SfuI TTCGAA 1 cut(s) 147
SinI GGWCC 2 cut(s) 172, 183
SmiMI CAYNNNNRTG 1 cut(s) 159
Sse9I AATT 3 cut(s) 24, 107, 324
SsiI CCGC 1 cut(s) 329
SspMI CTAG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 319
TaqI TCGA 1 cut(s) 147
TasI AATT 3 cut(s) 24, 107, 324
TatI WGTACW 2 cut(s) 100, 166
Tru1I TTAA 2 cut(s) 260, 321
Tru9I TTAA 2 cut(s) 260, 321
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 1 cut(s) 195
TspGWI ACGGA 1 cut(s) 140
Tth111I GACNNNGTC 1 cut(s) 92
VpaK11BI GGWCC 2 cut(s) 172, 183
XapI RAATTY 1 cut(s) 107
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.