RLG00000013741

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0014866
Physical Location & Seq
Reverse (-)
38521230 .. 38523199
1970 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013741

Sequence Viewer

Length: 519 bp
ATGAGTTCTCCTAGTTTCAAGGGTGGCAAAGGCAAGCCCAAGGCGACCATATCCGTCTCCAGGTCCTCCAAGGCCGGCCTCCAATTTCACGTCGGCCGTATCGCTCTCTTCCTCAAATCAGGCAAGTACGCCAAGCGAGTCGGCCATCCTCAAGTATCTCGCCGCGGAGGACCAATTGCGTTTGTTCCAAAATCTTCTGGCCTAATTTCTCTCGTTCTATCACACTCAGCCATTGTAATGGCCATTGATCTGATTGAGTGGTTTTGCTCTGAAGCTGCAATTTCCTCTGAGAAGAAAAAGAATGAGAAGGGAGGCTCTTCTAGGAAAGCTAATCCCATTCCTGACTATGTCCATGTACACAAATTCGTGTTTGCCTTCTCGGAGAAACCTGTGTGCTCTTTCGAAGGTCATTTGGATGCTGTACTAGACCTATCATGGTCCAGAGATCAGTTTAGTGTCAGCATTGATGTTCCTGGGAAAGATACATATCATTTTCAGCCTCACCAGAGAGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

173

Amino Acids

18.85

Weight (kDa)

9.76

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 165
AciI CCGC 2 cut(s) 163, 165
AcoI YGGCCR 3 cut(s) 94, 142, 240
AcsI RAATTY 1 cut(s) 362
AcuI CTGAAG 1 cut(s) 291
AfaI GTAC 3 cut(s) 128, 357, 423
AfiI CCNNNNNNNGG 1 cut(s) 60
AgsI TTSAA 1 cut(s) 19
AjiI CACGTC 1 cut(s) 91
AjnI CCWGG 2 cut(s) 59, 472
AluBI AGCT 2 cut(s) 275, 329
AluI AGCT 2 cut(s) 275, 329
Alw21I GWGCWC 1 cut(s) 398
Alw26I GTCTC 1 cut(s) 61
AoxI GGCC 6 cut(s) 72, 76, 94, 142, 199, 240
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 1 cut(s) 362
AspS9I GGNCC 3 cut(s) 63, 170, 438
AsuHPI GGTGA 1 cut(s) 494
AsuII TTCGAA 1 cut(s) 402
AvaII GGWCC 3 cut(s) 63, 170, 438
BalI TGGCCA 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 398
BbvI GCAGC 1 cut(s) 262
BccI CCATC 1 cut(s) 153
BceAI ACGGC 1 cut(s) 81
BciT130I CCWGG 2 cut(s) 61, 474
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 3 cut(s) 12, 321, 425
BisI GCNGC 2 cut(s) 163, 276
BlsI GCNGC 2 cut(s) 164, 277
Bme1390I CCNGG 2 cut(s) 61, 474
Bme18I GGWCC 3 cut(s) 63, 170, 438
BmgBI CACGTC 1 cut(s) 91
BmgT120I GGNCC 3 cut(s) 63, 170, 438
BmrFI CCNGG 2 cut(s) 61, 474
BmsI GCATC 1 cut(s) 406
BpmI CTGGAG 1 cut(s) 43
Bpu14I TTCGAA 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 135
BsaBI GATNNNNATC 1 cut(s) 486
BsaJI CCNNGG 4 cut(s) 39, 69, 163, 473
Bsc4I CCNNNNNNNGG 1 cut(s) 60
Bse118I RCCGGY 1 cut(s) 74
Bse8I GATNNNNATC 1 cut(s) 486
BseBI CCWGG 2 cut(s) 61, 474
BseDI CCNNGG 4 cut(s) 39, 69, 163, 473
BseGI GGATG 2 cut(s) 145, 421
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 1 cut(s) 60
BseMII CTCAG 2 cut(s) 240, 279
BseX3I CGGCCG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 262
Bsh1236I CGCG 1 cut(s) 165
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 6 cut(s) 74, 78, 96, 144, 201, 242
BsiEI CGRYCG 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 398
BsiSI CCGG 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 61
BsmBI CGTCTC 1 cut(s) 61
BsnI GGCC 6 cut(s) 74, 78, 96, 144, 201, 242
Bsp119I TTCGAA 1 cut(s) 402
Bsp1286I GDGCHC 1 cut(s) 398
Bsp1407I TGTACA 1 cut(s) 355
Bsp143I GATC 2 cut(s) 247, 445
BspACI CCGC 2 cut(s) 163, 165
BspANI GGCC 6 cut(s) 74, 78, 96, 144, 201, 242
BspCNI CTCAG 2 cut(s) 239, 280
BspFNI CGCG 1 cut(s) 165
BspQI GCTCTTC 1 cut(s) 322
BspT104I TTCGAA 1 cut(s) 402
BsrFI RCCGGY 1 cut(s) 74
BsrGI TGTACA 1 cut(s) 355
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 4 cut(s) 39, 69, 163, 473
BssMI GATC 2 cut(s) 247, 445
BssT1I CCWWGG 2 cut(s) 39, 69
Bst2UI CCWGG 2 cut(s) 61, 474
Bst6I CTCTTC 2 cut(s) 113, 322
BstAUI TGTACA 1 cut(s) 355
BstBI TTCGAA 1 cut(s) 402
BstC8I GCNNGC 2 cut(s) 35, 76
BstDEI CTNAG 2 cut(s) 226, 288
BstDSI CCRYGG 1 cut(s) 163
BstF5I GGATG 2 cut(s) 145, 421
BstFNI CGCG 1 cut(s) 165
BstKTI GATC 2 cut(s) 250, 448
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 2 cut(s) 247, 445
BstMCI CGRYCG 1 cut(s) 97
BstNI CCWGG 2 cut(s) 61, 474
BstSCI CCNGG 2 cut(s) 59, 472
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 262
BstXI CCANNNNNNTGG 1 cut(s) 238
BstZI CGGCCG 1 cut(s) 94
BsuRI GGCC 6 cut(s) 74, 78, 96, 144, 201, 242
BtgI CCRYGG 1 cut(s) 163
BtrI CACGTC 1 cut(s) 91
BtsCI GGATG 2 cut(s) 145, 421
Cac8I GCNNGC 2 cut(s) 35, 76
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 3 cut(s) 63, 170, 438
Cfr42I CCGCGG 1 cut(s) 166
Csp6I GTAC 3 cut(s) 127, 356, 422
CviAII CATG 2 cut(s) 353, 435
CviQI GTAC 3 cut(s) 127, 356, 422
DdeI CTNAG 2 cut(s) 226, 288
DpnI GATC 2 cut(s) 249, 447
DpnII GATC 2 cut(s) 247, 445
EaeI YGGCCR 3 cut(s) 94, 142, 240
EagI CGGCCG 1 cut(s) 94
Eam1104I CTCTTC 2 cut(s) 113, 322
EarI CTCTTC 2 cut(s) 113, 322
EclXI CGGCCG 1 cut(s) 94
Eco130I CCWWGG 2 cut(s) 39, 69
Eco47I GGWCC 3 cut(s) 63, 170, 438
Eco52I CGGCCG 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 291
EcoO109I RGGNCCY 1 cut(s) 63
EcoRII CCWGG 2 cut(s) 59, 472
EcoT14I CCWWGG 2 cut(s) 39, 69
ErhI CCWWGG 2 cut(s) 39, 69
Esp3I CGTCTC 1 cut(s) 61
FaeI CATG 2 cut(s) 356, 438
FaiI YATR 5 cut(s) 50, 348, 354, 436, 487
FatI CATG 2 cut(s) 352, 434
Fnu4HI GCNGC 2 cut(s) 163, 276
FokI GGATG 2 cut(s) 132, 428
FseI GGCCGGCC 1 cut(s) 78
Fsp4HI GCNGC 2 cut(s) 163, 276
FspBI CTAG 3 cut(s) 12, 321, 425
GluI GCNGC 2 cut(s) 163, 276
GsuI CTGGAG 1 cut(s) 43
HaeIII GGCC 6 cut(s) 74, 78, 96, 144, 201, 242
HapII CCGG 1 cut(s) 75
Hin1II CATG 2 cut(s) 356, 438
HinfI GANTC 1 cut(s) 138
HpaII CCGG 1 cut(s) 75
HphI GGTGA 1 cut(s) 494
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 4 cut(s) 252, 271, 289, 382
Hpy188III TCNNGA 2 cut(s) 341, 441
Hpy8I GTNNAC 1 cut(s) 358
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 3 cut(s) 301, 385, 398
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 1 cut(s) 278
HpyF3I CTNAG 2 cut(s) 226, 288
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 2 cut(s) 356, 438
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
KspI CCGCGG 1 cut(s) 166
Kzo9I GATC 2 cut(s) 247, 445
LguI GCTCTTC 1 cut(s) 322
Lsp1109I GCAGC 1 cut(s) 262
LweI GCATC 1 cut(s) 406
MaeI CTAG 3 cut(s) 12, 321, 425
MaeII ACGT 1 cut(s) 90
MalI GATC 2 cut(s) 249, 447
MboI GATC 2 cut(s) 247, 445
MboII GAAGA 4 cut(s) 100, 186, 304, 309
MfeI CAATTG 1 cut(s) 174
MhlI GDGCHC 1 cut(s) 398
MlsI TGGCCA 1 cut(s) 242
MluCI AATT 5 cut(s) 83, 174, 204, 279, 362
MluNI TGGCCA 1 cut(s) 242
MlyI GAGTC 1 cut(s) 147
MnlI CCTC 8 cut(s) 76, 89, 122, 159, 161, 295, 305, 510
Mox20I TGGCCA 1 cut(s) 242
MroNI GCCGGC 1 cut(s) 74
MscI TGGCCA 1 cut(s) 242
MslI CAYNNNNRTG 2 cut(s) 236, 414
Msp20I TGGCCA 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 165
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 2 cut(s) 61, 474
MunI CAATTG 1 cut(s) 174
MvaI CCWGG 2 cut(s) 61, 474
MvnI CGCG 1 cut(s) 165
NaeI GCCGGC 1 cut(s) 76
NdeII GATC 2 cut(s) 247, 445
NgoMIV GCCGGC 1 cut(s) 74
NlaIII CATG 2 cut(s) 356, 438
NspV TTCGAA 1 cut(s) 402
PciSI GCTCTTC 1 cut(s) 322
PdiI GCCGGC 1 cut(s) 76
PflFI GACNNNGTC 1 cut(s) 347
PkrI GCNGC 2 cut(s) 164, 277
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PpuMI RGGWCCY 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 63
Psp6I CCWGG 2 cut(s) 59, 472
PspGI CCWGG 2 cut(s) 59, 472
PspPI GGNCC 3 cut(s) 63, 170, 438
PspPPI RGGWCCY 1 cut(s) 63
PsyI GACNNNGTC 1 cut(s) 347
RigI GGCCGGCC 1 cut(s) 78
RsaI GTAC 3 cut(s) 128, 357, 423
RsaNI GTAC 3 cut(s) 127, 356, 422
RseI CAYNNNNRTG 2 cut(s) 236, 414
SacII CCGCGG 1 cut(s) 166
SapI GCTCTTC 1 cut(s) 322
SatI GCNGC 2 cut(s) 163, 276
Sau3AI GATC 2 cut(s) 247, 445
Sau96I GGNCC 3 cut(s) 63, 170, 438
SchI GAGTC 1 cut(s) 147
ScrFI CCNGG 2 cut(s) 61, 474
SduI GDGCHC 1 cut(s) 398
SetI ASST 7 cut(s) 65, 93, 277, 331, 391, 409, 432
SfaNI GCATC 1 cut(s) 406
Sfr303I CCGCGG 1 cut(s) 166
SfuI TTCGAA 1 cut(s) 402
SgrBI CCGCGG 1 cut(s) 166
SinI GGWCC 3 cut(s) 63, 170, 438
SmiMI CAYNNNNRTG 2 cut(s) 236, 414
SmlI CTYRAG 1 cut(s) 150
SmoI CTYRAG 1 cut(s) 150
Sse9I AATT 5 cut(s) 83, 174, 204, 279, 362
SsiI CCGC 2 cut(s) 163, 165
SspMI CTAG 3 cut(s) 12, 321, 425
StyD4I CCNGG 2 cut(s) 59, 472
StyI CCWWGG 2 cut(s) 39, 69
TaiI ACGT 1 cut(s) 93
TaqI TCGA 1 cut(s) 402
TasI AATT 5 cut(s) 83, 174, 204, 279, 362
TatI WGTACW 2 cut(s) 355, 421
TauI GCSGC 1 cut(s) 165
TseI GCWGC 1 cut(s) 275
TspGWI ACGGA 1 cut(s) 43
Tth111I GACNNNGTC 1 cut(s) 347
VpaK11BI GGWCC 3 cut(s) 63, 170, 438
XapI RAATTY 1 cut(s) 362
XspI CTAG 3 cut(s) 12, 321, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.