Rw2G031050

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0014866
Physical Location & Seq
Forward (+)
51018698 .. 51020129
1432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G031050.1

Sequence Viewer

Length: 585 bp
ATGAGTTCTCCTAGTTTCAAGGGTGGCAGAGGCAAGCCCAAGGCCACCATATCCGTCTCCAGGTCCTCCAAGGCCGGCCTCCAATTTCACGTCGGCCGTATCGCTCTCTTCCTCATATCAGGCAAGTACGCCAAGCGAGTCGGCCGTCCTCAAGTATCTCGCCGTGGAGGTCATTTGGATGCTGTACTGGACCTATCATGGTCCAGAGATCAGCTATTGCTTTCATCTTCAATGGACAAAACTGTTAGATTATGGGATATGGTGACCAAGAGTTGTTTAAAAATGTTTGCCCACAATGATTATGGTAAGAAGCATCTATACATACATAGTGCAGAAGGTACGAGTCTTTCATACATAGTATATTCACTGGACAACCCTGCAGAACCTTATTCTAGTTTTAACATACATAGTGAATGGCAGCTTTATAGCACAGTTACATTAAGACATGGAGAGAAGAAGCATTACAATCATAAGGTGGATGCTTATAGCTTTGCAATTGTATGTGGGAACTCATTCATAACAAGCTGCCCTTTGAAGGCATGTCAAATCTGCAAGCAGCATATGCAGCTGCTTTTAAGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

194

Amino Acids

21.87

Weight (kDa)

9.8

Isoelectric Point (pI)

47.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_1st PF25173 52 - 99 2.2e-07 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 56 - 99 2.9e-07 THOC3 beta-propeller domain
WD40 PF00400 56 - 86 8.8e-07 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 57 - 99 6.8e-07 WDR5 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 57 - 97 5.8e-06 TEP-1 second beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 57 - 97 8.2e-06 CAF1B/HIR1 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 94, 142
AfaI GTAC 3 cut(s) 128, 186, 340
AfiI CCNNNNNNNGG 2 cut(s) 60, 535
AgsI TTSAA 3 cut(s) 19, 231, 535
AjiI CACGTC 1 cut(s) 91
AjnI CCWGG 1 cut(s) 59
AluBI AGCT 5 cut(s) 214, 421, 489, 525, 568
AluI AGCT 5 cut(s) 214, 421, 489, 525, 568
Alw26I GTCTC 1 cut(s) 61
AoxI GGCC 5 cut(s) 42, 72, 76, 94, 142
ApeKI GCWGC 5 cut(s) 418, 525, 556, 565, 568
Asp700I GAANNNNTTC 1 cut(s) 512
AspS9I GGNCC 3 cut(s) 63, 190, 201
AsuHPI GGTGA 1 cut(s) 274
AvaII GGWCC 3 cut(s) 63, 190, 201
BarI GAAGNNNNNNTAC 4 cut(s) 302, 334, 446, 478
BbvI GCAGC 5 cut(s) 430, 512, 555, 568, 577
BceAI ACGGC 3 cut(s) 81, 129, 147
BciT130I CCWGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 2 cut(s) 12, 393
BfmI CTRYAG 1 cut(s) 378
BisI GCNGC 5 cut(s) 419, 526, 557, 566, 569
BlsI GCNGC 5 cut(s) 420, 527, 558, 567, 570
Bme1390I CCNGG 1 cut(s) 61
Bme18I GGWCC 3 cut(s) 63, 190, 201
BmgBI CACGTC 1 cut(s) 91
BmgT120I GGNCC 3 cut(s) 63, 190, 201
BmrFI CCNGG 1 cut(s) 61
BmsI GCATC 3 cut(s) 169, 322, 469
BpmI CTGGAG 1 cut(s) 43
BpuEI CTTGAG 1 cut(s) 135
BsaJI CCNNGG 3 cut(s) 39, 69, 163
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 535
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 2 cut(s) 192, 372
BseBI CCWGG 1 cut(s) 61
BseDI CCNNGG 3 cut(s) 39, 69, 163
BseGI GGATG 2 cut(s) 184, 484
BseLI CCNNNNNNNGG 2 cut(s) 60, 535
BseNI ACTGG 2 cut(s) 192, 372
BseX3I CGGCCG 2 cut(s) 94, 142
BseXI GCAGC 5 cut(s) 430, 512, 555, 568, 577
BsgI GTGCAG 1 cut(s) 351
Bsh1285I CGRYCG 2 cut(s) 97, 145
BshFI GGCC 5 cut(s) 44, 74, 78, 96, 144
BsiEI CGRYCG 2 cut(s) 97, 145
BsiSI CCGG 1 cut(s) 75
BslI CCNNNNNNNGG 2 cut(s) 60, 535
BsmAI GTCTC 1 cut(s) 61
BsmBI CGTCTC 1 cut(s) 61
BsnI GGCC 5 cut(s) 44, 74, 78, 96, 144
Bsp143I GATC 1 cut(s) 208
BspANI GGCC 5 cut(s) 44, 74, 78, 96, 144
BspMAI CTGCAG 1 cut(s) 382
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 2 cut(s) 192, 372
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 3 cut(s) 39, 69, 163
BssMI GATC 1 cut(s) 208
BssT1I CCWWGG 2 cut(s) 39, 69
Bst2UI CCWGG 1 cut(s) 61
Bst4CI ACNGT 2 cut(s) 244, 433
Bst6I CTCTTC 1 cut(s) 113
BstAPI GCANNNNNTGC 1 cut(s) 562
BstC8I GCNNGC 3 cut(s) 35, 76, 554
BstDSI CCRYGG 1 cut(s) 163
BstEII GGTNACC 1 cut(s) 262
BstF5I GGATG 2 cut(s) 184, 484
BstKTI GATC 1 cut(s) 211
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 1 cut(s) 208
BstMCI CGRYCG 2 cut(s) 97, 145
BstMWI GCNNNNNNNGC 2 cut(s) 562, 565
BstNI CCWGG 1 cut(s) 61
BstNSI RCATGY 1 cut(s) 543
BstPI GGTNACC 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 378
BstV1I GCAGC 5 cut(s) 430, 512, 555, 568, 577
BstZI CGGCCG 2 cut(s) 94, 142
BsuRI GGCC 5 cut(s) 44, 74, 78, 96, 144
BtgI CCRYGG 1 cut(s) 163
BtrI CACGTC 1 cut(s) 91
BtsCI GGATG 2 cut(s) 184, 484
BtsIMutI CAGTG 1 cut(s) 365
Cac8I GCNNGC 3 cut(s) 35, 76, 554
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 3 cut(s) 63, 190, 201
Csp6I GTAC 3 cut(s) 127, 185, 339
CviAII CATG 3 cut(s) 198, 446, 540
CviQI GTAC 3 cut(s) 127, 185, 339
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
DraI TTTAAA 1 cut(s) 279
EaeI YGGCCR 2 cut(s) 94, 142
EagI CGGCCG 2 cut(s) 94, 142
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
EclXI CGGCCG 2 cut(s) 94, 142
Eco130I CCWWGG 2 cut(s) 39, 69
Eco47I GGWCC 3 cut(s) 63, 190, 201
Eco52I CGGCCG 2 cut(s) 94, 142
Eco91I GGTNACC 1 cut(s) 262
EcoO109I RGGNCCY 1 cut(s) 63
EcoO65I GGTNACC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 59
EcoT14I CCWWGG 2 cut(s) 39, 69
ErhI CCWWGG 2 cut(s) 39, 69
Esp3I CGTCTC 1 cut(s) 61
FaeI CATG 3 cut(s) 201, 449, 543
FalI AAGNNNNNCTT 2 cut(s) 514, 546
FatI CATG 3 cut(s) 197, 445, 539
FauNDI CATATG 1 cut(s) 561
Fnu4HI GCNGC 5 cut(s) 419, 526, 557, 566, 569
FokI GGATG 2 cut(s) 191, 491
FseI GGCCGGCC 1 cut(s) 78
Fsp4HI GCNGC 5 cut(s) 419, 526, 557, 566, 569
FspBI CTAG 2 cut(s) 12, 393
GluI GCNGC 5 cut(s) 419, 526, 557, 566, 569
GsuI CTGGAG 1 cut(s) 43
HaeIII GGCC 5 cut(s) 44, 74, 78, 96, 144
HapII CCGG 1 cut(s) 75
Hin1II CATG 3 cut(s) 201, 449, 543
HinfI GANTC 2 cut(s) 138, 343
HpaII CCGG 1 cut(s) 75
HphI GGTGA 1 cut(s) 274
Hpy188III TCNNGA 1 cut(s) 204
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 329, 529
HpyCH4III ACNGT 2 cut(s) 244, 433
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 5 cut(s) 332, 380, 494, 552, 565
HpyF10VI GCNNNNNNNGC 2 cut(s) 562, 565
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 3 cut(s) 201, 449, 543
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
Kzo9I GATC 1 cut(s) 208
LpnPI CCDG 8 cut(s) 46, 73, 88, 105, 173, 217, 353, 390
Lsp1109I GCAGC 5 cut(s) 430, 512, 555, 568, 577
LweI GCATC 3 cut(s) 169, 322, 469
MaeI CTAG 2 cut(s) 12, 393
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 2 cut(s) 262, 433
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 3 cut(s) 100, 219, 466
MfeI CAATTG 1 cut(s) 495
MluCI AATT 2 cut(s) 83, 495
MlyI GAGTC 2 cut(s) 147, 352
MnlI CCTC 6 cut(s) 23, 76, 89, 122, 159, 161
MroNI GCCGGC 1 cut(s) 74
MroXI GAANNNNTTC 1 cut(s) 512
MseI TTAA 4 cut(s) 278, 399, 440, 575
MslI CAYNNNNRTG 1 cut(s) 177
MspA1I CMGCKG 1 cut(s) 568
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 61
MunI CAATTG 1 cut(s) 495
MvaI CCWGG 1 cut(s) 61
MwoI GCNNNNNNNGC 2 cut(s) 562, 565
NaeI GCCGGC 1 cut(s) 76
NdeI CATATG 1 cut(s) 561
NdeII GATC 1 cut(s) 208
NgoMIV GCCGGC 1 cut(s) 74
NlaIII CATG 3 cut(s) 201, 449, 543
NmuCI GTSAC 1 cut(s) 262
NspI RCATGY 1 cut(s) 543
PdiI GCCGGC 1 cut(s) 76
PdmI GAANNNNTTC 1 cut(s) 512
PkrI GCNGC 5 cut(s) 420, 527, 558, 567, 570
PleI GAGTC 2 cut(s) 146, 351
PpsI GAGTC 2 cut(s) 146, 351
PpuMI RGGWCCY 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 59
PspEI GGTNACC 1 cut(s) 262
PspGI CCWGG 1 cut(s) 59
PspPI GGNCC 3 cut(s) 63, 190, 201
PspPPI RGGWCCY 1 cut(s) 63
PstI CTGCAG 1 cut(s) 382
PvuII CAGCTG 1 cut(s) 568
RigI GGCCGGCC 1 cut(s) 78
RsaI GTAC 3 cut(s) 128, 186, 340
RsaNI GTAC 3 cut(s) 127, 185, 339
RseI CAYNNNNRTG 1 cut(s) 177
SaqAI TTAA 4 cut(s) 278, 399, 440, 575
SatI GCNGC 5 cut(s) 419, 526, 557, 566, 569
Sau3AI GATC 1 cut(s) 208
Sau96I GGNCC 3 cut(s) 63, 190, 201
SchI GAGTC 2 cut(s) 147, 352
ScrFI CCNGG 1 cut(s) 61
SfaNI GCATC 3 cut(s) 169, 322, 469
SfcI CTRYAG 1 cut(s) 378
SinI GGWCC 3 cut(s) 63, 190, 201
SmiMI CAYNNNNRTG 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 150
SmoI CTYRAG 1 cut(s) 150
Sse9I AATT 2 cut(s) 83, 495
SspMI CTAG 2 cut(s) 12, 393
StyD4I CCNGG 1 cut(s) 59
StyI CCWWGG 2 cut(s) 39, 69
TaaI ACNGT 2 cut(s) 244, 433
TaiI ACGT 1 cut(s) 93
TasI AATT 2 cut(s) 83, 495
TatI WGTACW 1 cut(s) 184
Tru1I TTAA 4 cut(s) 278, 399, 440, 575
Tru9I TTAA 4 cut(s) 278, 399, 440, 575
TscAI CASTG 1 cut(s) 372
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 5 cut(s) 418, 525, 556, 565, 568
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 3 cut(s) 213, 339, 505
TspGWI ACGGA 1 cut(s) 43
TspRI CASTG 1 cut(s) 372
VpaK11BI GGWCC 3 cut(s) 63, 190, 201
XceI RCATGY 1 cut(s) 543
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 512
XspI CTAG 2 cut(s) 12, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.