Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0014866

Physical Location & Seq

Genomic Coordinates Reverse (-)

45967119 .. 45969999

Gene Structure 2881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014032

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCCATTGATCTAATTGAGTGGTTTTGGTTGTTTGTTTGCCGTGAAACTGAAGGAAAAGAAAAAAAAATTGAATTAGATATAGAACGAACCCGCTGCATTCCTTGGTGTCCCCATATCTGGATCGATCAATGTGTCTTAGCTCTGAAGCTGCAATTTCCTTTGAGAAGAAAAAGAAGGGGAAGGGAGGCTCTTCTAGGAAAGGTTTCAATTCCTGACTATGTCCATGTACACGAATTCGTGTTTGCCCTCTCGGAGAAACCTGTGTGCTCTTTCGAAGGTCATTTGGATGCTGTACTGGACCTATCATGGTCCAGAGATCAGCTATTACTTTCATCTTCAATGGACAAAACTGTTAGATTATGGGATATGGTGACCAAGAACCATAAAACAGTTAAACTTGCTGATTTTGGCTTAGCAAGAGATGAGTCATTAACAGAAATGATGACTGCTGAAACTGGGACATACCGGTGGATAGCTCCTGAACTTTATAGCACAGTTACATTAACACATGGAGAGAAGAAGCATTACAATCATAAGGTGGATGCTTATAGCTTTGCAATTGTATTGTGGGAACTCATTCATAACAAGCTGCACTTTGAAGGCATGTCAAATCTGCAAGCAGCATATGCAGCTGCTTTTAAAGTTGCATTAATCCCTTACATTACTGCCAGTGATCCTGATCTATCGGTCACCACAGAAGCATTGATGGTCCTGGATTCTTGTGGATCGGACATAATTGAATTAGGTGAGCCATATTCTGATCCATTAGCAGATGGGCCAGTTATACAGCCACTCATGCCTTGGCAAGAGGGACCGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

275

Amino Acids

31.35

Weight (kDa)

5.38

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR36-Utp21_2nd	PF25168	85 - 171	4.9e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	85 - 128	2.1e-06	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	86 - 129	4.2e-06	WDR5 beta-propeller domain
WD40	PF00400	87 - 123	1.4e-08	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	90 - 129	7.3e-07	THOC3 beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	92 - 132	5.5e-06	CAF1B/HIR1 beta-propeller domain
PK_Tyr_Ser-Thr	PF07714	125 - 208	6.6e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	127 - 242	9.9e-14	Protein kinase domain
Trp_syntA	PF00290	214 - 264	1.6e-17	Tryptophan synthase alpha chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014866)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007378 RLG00000013741 RLG00000014032 RLG00000023877 RLG00000029730 RLG00000032243 RLG00000032929
rosa_multiflora	Rmu_co8064554.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410470
rosa_samantha	Rh1BG141200 Rh1DG173400 Rh2AG180400 Rh5BG165700 Rh5BG464700 Rh5CG486700 Rh6BG252900
rosa_wichuraiana	Rw2G031050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	94
AclWI	GGATC	4 cut(s)	131, 671, 736, 758
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	236
AcuI	CTGAAG	2 cut(s)	72, 167
AfaI	GTAC	2 cut(s)	231, 297
AfiI	CCNNNNNNNGG	1 cut(s)	120
AgeI	ACCGGT	1 cut(s)	468
AgsI	TTSAA	5 cut(s)	74, 210, 342, 602, 743
AjnI	CCWGG	1 cut(s)	714
AluBI	AGCT	7 cut(s)	143, 151, 325, 479, 555, 592, 635
AluI	AGCT	7 cut(s)	143, 151, 325, 479, 555, 592, 635
Alw21I	GWGCWC	1 cut(s)	272
AlwI	GGATC	4 cut(s)	131, 671, 736, 758
AoxI	GGCC	2 cut(s)	3, 779
ApeKI	GCWGC	6 cut(s)	96, 151, 592, 623, 632, 635
ApoI	RAATTY	1 cut(s)	236
AseI	ATTAAT	1 cut(s)	653
AsiGI	ACCGGT	1 cut(s)	468
Asp700I	GAANNNNTTC	2 cut(s)	205, 579
AspS9I	GGNCC	5 cut(s)	301, 312, 712, 779, 815
AsuHPI	GGTGA	3 cut(s)	385, 685, 761
AsuII	TTCGAA	1 cut(s)	276
AvaII	GGWCC	4 cut(s)	301, 312, 712, 815
BalI	TGGCCA	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	512, 544
Bbv12I	GWGCWC	1 cut(s)	272
BbvI	GCAGC	6 cut(s)	83, 138, 579, 622, 635, 644
BccI	CCATC	2 cut(s)	703, 770
BceAI	ACGGC	1 cut(s)	27
BcgI	CGANNNNNNTGC	2 cut(s)	78, 112
BciT130I	CCWGG	1 cut(s)	716
BfaI	CTAG	1 cut(s)	197
BisI	GCNGC	6 cut(s)	97, 152, 593, 624, 633, 636
BlpI	GCTNAGC	1 cut(s)	415
BlsI	GCNGC	6 cut(s)	98, 153, 594, 625, 634, 637
Bme1390I	CCNGG	1 cut(s)	716
Bme18I	GGWCC	4 cut(s)	301, 312, 712, 815
BmgT120I	GGNCC	5 cut(s)	301, 312, 712, 779, 815
BmiI	GGNNCC	1 cut(s)	816
BmrFI	CCNGG	1 cut(s)	716
BmrI	ACTGGG	1 cut(s)	468
BmsI	GCATC	2 cut(s)	280, 535
BmuI	ACTGGG	1 cut(s)	468
Bpu1102I	GCTNAGC	1 cut(s)	415
Bpu14I	TTCGAA	1 cut(s)	276
Bsa29I	ATCGAT	1 cut(s)	126
BsaBI	GATNNNNATC	1 cut(s)	681
BsaJI	CCNNGG	2 cut(s)	104, 803
BsaWI	WCCGGW	1 cut(s)	468
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
Bse118I	RCCGGY	1 cut(s)	468
Bse1I	ACTGG	4 cut(s)	303, 463, 672, 782
Bse8I	GATNNNNATC	1 cut(s)	681
BseBI	CCWGG	1 cut(s)	716
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	104, 803
BseGI	GGATG	2 cut(s)	295, 550
BseJI	GATNNNNATC	1 cut(s)	681
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseNI	ACTGG	4 cut(s)	303, 463, 672, 782
BseXI	GCAGC	6 cut(s)	83, 138, 579, 622, 635, 644
BsgI	GTGCAG	1 cut(s)	578
BshFI	GGCC	2 cut(s)	5, 781
BshTI	ACCGGT	1 cut(s)	468
BshVI	ATCGAT	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	469
BslFI	GGGAC	2 cut(s)	96, 475
BslI	CCNNNNNNNGG	1 cut(s)	120
BsmFI	GGGAC	2 cut(s)	96, 475
BsmI	GAATGC	1 cut(s)	99
BsnI	GGCC	2 cut(s)	5, 781
Bsp119I	TTCGAA	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp1407I	TGTACA	1 cut(s)	229
Bsp143I	GATC	8 cut(s)	10, 123, 127, 319, 676, 682, 728, 763
Bsp1720I	GCTNAGC	1 cut(s)	415
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	2 cut(s)	5, 781
BspDI	ATCGAT	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	816
BspPI	GGATC	4 cut(s)	131, 671, 736, 758
BspQI	GCTCTTC	1 cut(s)	198
BspT104I	TTCGAA	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	468
BsrGI	TGTACA	1 cut(s)	229
BsrI	ACTGG	4 cut(s)	303, 463, 672, 782
BssAI	RCCGGY	1 cut(s)	468
BssECI	CCNNGG	2 cut(s)	104, 803
BssMI	GATC	8 cut(s)	10, 123, 127, 319, 676, 682, 728, 763
BssT1I	CCWWGG	2 cut(s)	104, 803
Bst2UI	CCWGG	1 cut(s)	716
Bst4CI	ACNGT	3 cut(s)	355, 394, 499
Bst6I	CTCTTC	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstAUI	TGTACA	1 cut(s)	229
BstBI	TTCGAA	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	621
BstDEI	CTNAG	2 cut(s)	139, 415
BstEII	GGTNACC	2 cut(s)	373, 691
BstF5I	GGATG	2 cut(s)	295, 550
BstKTI	GATC	8 cut(s)	13, 126, 130, 322, 679, 685, 731, 766
BstMBI	GATC	8 cut(s)	10, 123, 127, 319, 676, 682, 728, 763
BstMWI	GCNNNNNNNGC	3 cut(s)	629, 632, 799
BstNI	CCWGG	1 cut(s)	716
BstNSI	RCATGY	1 cut(s)	610
BstPI	GGTNACC	2 cut(s)	373, 691
BstSCI	CCNGG	1 cut(s)	714
BstV1I	GCAGC	6 cut(s)	83, 138, 579, 622, 635, 644
Bsu15I	ATCGAT	1 cut(s)	126
BsuRI	GGCC	2 cut(s)	5, 781
BsuTUI	ATCGAT	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	295, 550
BtsIMutI	CAGTG	1 cut(s)	679
Cac8I	GCNNGC	1 cut(s)	621
Cfr10I	RCCGGY	1 cut(s)	468
Cfr13I	GGNCC	5 cut(s)	301, 312, 712, 779, 815
ClaI	ATCGAT	1 cut(s)	126
Csp6I	GTAC	2 cut(s)	230, 296
CspAI	ACCGGT	1 cut(s)	468
CviAII	CATG	5 cut(s)	227, 309, 512, 607, 799
CviQI	GTAC	2 cut(s)	230, 296
DdeI	CTNAG	2 cut(s)	139, 415
DpnI	GATC	8 cut(s)	12, 125, 129, 321, 678, 684, 730, 765
DpnII	GATC	8 cut(s)	10, 123, 127, 319, 676, 682, 728, 763
DraI	TTTAAA	1 cut(s)	643
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco130I	CCWWGG	2 cut(s)	104, 803
Eco47I	GGWCC	4 cut(s)	301, 312, 712, 815
Eco57I	CTGAAG	2 cut(s)	72, 167
Eco91I	GGTNACC	2 cut(s)	373, 691
EcoO65I	GGTNACC	2 cut(s)	373, 691
EcoRI	GAATTC	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	714
EcoT14I	CCWWGG	2 cut(s)	104, 803
ErhI	CCWWGG	2 cut(s)	104, 803
FaeI	CATG	5 cut(s)	230, 312, 515, 610, 802
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FaqI	GGGAC	2 cut(s)	96, 475
FatI	CATG	5 cut(s)	226, 308, 511, 606, 798
FauI	CCCGC	1 cut(s)	101
FauNDI	CATATG	1 cut(s)	628
Fnu4HI	GCNGC	6 cut(s)	97, 152, 593, 624, 633, 636
FokI	GGATG	2 cut(s)	302, 557
Fsp4HI	GCNGC	6 cut(s)	97, 152, 593, 624, 633, 636
FspBI	CTAG	1 cut(s)	197
GluI	GCNGC	6 cut(s)	97, 152, 593, 624, 633, 636
HaeIII	GGCC	2 cut(s)	5, 781
HapII	CCGG	1 cut(s)	469
Hin1II	CATG	5 cut(s)	230, 312, 515, 610, 802
HinfI	GANTC	2 cut(s)	428, 719
HpaII	CCGG	1 cut(s)	469
HphI	GGTGA	3 cut(s)	385, 685, 761
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	4 cut(s)	147, 256, 733, 763
Hpy188III	TCNNGA	5 cut(s)	121, 215, 315, 482, 680
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	5 cut(s)	47, 171, 177, 272, 596
HpyCH4III	ACNGT	3 cut(s)	355, 394, 499
HpyCH4V	TGCA	7 cut(s)	99, 154, 560, 595, 619, 632, 650
HpyF10VI	GCNNNNNNNGC	3 cut(s)	629, 632, 799
HpyF3I	CTNAG	2 cut(s)	139, 415
Hsp92II	CATG	5 cut(s)	230, 312, 515, 610, 802
Kzo9I	GATC	8 cut(s)	10, 123, 127, 319, 676, 682, 728, 763
LguI	GCTCTTC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	484
Lsp1109I	GCAGC	6 cut(s)	83, 138, 579, 622, 635, 644
LweI	GCATC	2 cut(s)	280, 535
MaeI	CTAG	1 cut(s)	197
MaeIII	GTNAC	3 cut(s)	373, 499, 691
MalI	GATC	8 cut(s)	12, 125, 129, 321, 678, 684, 730, 765
MboI	GATC	8 cut(s)	10, 123, 127, 319, 676, 682, 728, 763
MboII	GAAGA	4 cut(s)	180, 185, 330, 532
MfeI	CAATTG	1 cut(s)	561
MhlI	GDGCHC	1 cut(s)	272
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	9 cut(s)	15, 69, 74, 155, 210, 236, 561, 738, 743
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	437
MnlI	CCTC	3 cut(s)	181, 260, 805
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	2 cut(s)	205, 579
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	396, 434, 506, 642, 653
MslI	CAYNNNNRTG	2 cut(s)	288, 469
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	96, 635
MspI	CCGG	1 cut(s)	469
MspR9I	CCNGG	1 cut(s)	716
MunI	CAATTG	1 cut(s)	561
Mva1269I	GAATGC	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	716
MwoI	GCNNNNNNNGC	3 cut(s)	629, 632, 799
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	8 cut(s)	10, 123, 127, 319, 676, 682, 728, 763
NlaIII	CATG	5 cut(s)	230, 312, 515, 610, 802
NlaIV	GGNNCC	1 cut(s)	816
NmuCI	GTSAC	2 cut(s)	373, 691
NspI	RCATGY	1 cut(s)	610
NspV	TTCGAA	1 cut(s)	276
PciSI	GCTCTTC	1 cut(s)	198
PctI	GAATGC	1 cut(s)	99
PdmI	GAANNNNTTC	2 cut(s)	205, 579
PfeI	GAWTC	1 cut(s)	719
PflFI	GACNNNGTC	1 cut(s)	221
PfoI	TCCNGGA	1 cut(s)	714
PinAI	ACCGGT	1 cut(s)	468
PkrI	GCNGC	6 cut(s)	98, 153, 594, 625, 634, 637
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
PshBI	ATTAAT	1 cut(s)	653
Psp6I	CCWGG	1 cut(s)	714
PspEI	GGTNACC	2 cut(s)	373, 691
PspGI	CCWGG	1 cut(s)	714
PspN4I	GGNNCC	1 cut(s)	816
PspPI	GGNCC	5 cut(s)	301, 312, 712, 779, 815
PsyI	GACNNNGTC	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	2 cut(s)	231, 297
RsaNI	GTAC	2 cut(s)	230, 296
RseI	CAYNNNNRTG	2 cut(s)	288, 469
SapI	GCTCTTC	1 cut(s)	198
SaqAI	TTAA	5 cut(s)	396, 434, 506, 642, 653
SatI	GCNGC	6 cut(s)	97, 152, 593, 624, 633, 636
Sau3AI	GATC	8 cut(s)	10, 123, 127, 319, 676, 682, 728, 763
Sau96I	GGNCC	5 cut(s)	301, 312, 712, 779, 815
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	1 cut(s)	716
SduI	GDGCHC	1 cut(s)	272
SfaNI	GCATC	2 cut(s)	280, 535
SfuI	TTCGAA	1 cut(s)	276
SinI	GGWCC	4 cut(s)	301, 312, 712, 815
SmiMI	CAYNNNNRTG	2 cut(s)	288, 469
Sse9I	AATT	9 cut(s)	15, 69, 74, 155, 210, 236, 561, 738, 743
SsiI	CCGC	1 cut(s)	94
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	714
StyI	CCWWGG	2 cut(s)	104, 803
TaaI	ACNGT	3 cut(s)	355, 394, 499
TaqI	TCGA	2 cut(s)	126, 276
TaqII	GACCGA	1 cut(s)	679
TasI	AATT	9 cut(s)	15, 69, 74, 155, 210, 236, 561, 738, 743
TatI	WGTACW	2 cut(s)	229, 295
TfiI	GAWTC	1 cut(s)	719
Tru1I	TTAA	5 cut(s)	396, 434, 506, 642, 653
Tru9I	TTAA	5 cut(s)	396, 434, 506, 642, 653
TscAI	CASTG	1 cut(s)	679
TseFI	GTSAC	2 cut(s)	373, 691
TseI	GCWGC	6 cut(s)	96, 151, 592, 623, 632, 635
Tsp45I	GTSAC	2 cut(s)	373, 691
TspDTI	ATGAA	2 cut(s)	324, 572
TspRI	CASTG	1 cut(s)	679
Tth111I	GACNNNGTC	1 cut(s)	221
VpaK11BI	GGWCC	4 cut(s)	301, 312, 712, 815
VspI	ATTAAT	1 cut(s)	653
XapI	RAATTY	1 cut(s)	236
XceI	RCATGY	1 cut(s)	610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	801
XmnI	GAANNNNTTC	2 cut(s)	205, 579
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.