Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0014866

Physical Location & Seq

Genomic Coordinates Forward (+)

47967443 .. 47968379

Gene Structure 937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029730

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAGTTCTTTTCGTTTCAAGGGTGGCAGAGGCAAGCCCAAGGCGACCATATCCATCTCCAGGTCCTCCAAGGCCGGCCTCCAATTTCACGTCGGCCGTATCGCTCTCTTCCTCAAATCAGGCAAGTACGCCAAGCGAGTCGGCCGTCCTCAAGTATCTCGCCGCGGAGGAAAAGAAAACGAAATTGAATTAGATATAGAACGAACCCGCTGCATTCCTTGGTGTCCCCATATCCGGATTGATCAATGTCATTTGGATGCTGTACTAGACCTATCATGGTCCAGAGATCAGCTATTGCTTTCATCTTCAATGGACAAAACTATTAGATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

111

Amino Acids

12.5

Weight (kDa)

10.52

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014866)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007378 RLG00000013741 RLG00000014032 RLG00000023877 RLG00000029730 RLG00000032243 RLG00000032929
rosa_multiflora	Rmu_co8064554.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410470
rosa_samantha	Rh1BG141200 Rh1DG173400 Rh2AG180400 Rh5BG165700 Rh5BG464700 Rh5CG486700 Rh6BG252900
rosa_wichuraiana	Rw2G031050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	165
AccIII	TCCGGA	1 cut(s)	234
AciI	CCGC	3 cut(s)	163, 165, 208
AcoI	YGGCCR	2 cut(s)	94, 142
AfaI	GTAC	2 cut(s)	128, 264
AfiI	CCNNNNNNNGG	2 cut(s)	60, 234
AgsI	TTSAA	3 cut(s)	19, 188, 309
AjiI	CACGTC	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	59
AluBI	AGCT	1 cut(s)	292
AluI	AGCT	1 cut(s)	292
Aor13HI	TCCGGA	1 cut(s)	234
AoxI	GGCC	4 cut(s)	72, 76, 94, 142
ApeKI	GCWGC	1 cut(s)	210
AspS9I	GGNCC	2 cut(s)	63, 279
AvaII	GGWCC	2 cut(s)	63, 279
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	1 cut(s)	62
BceAI	ACGGC	2 cut(s)	81, 129
BcgI	CGANNNNNNTGC	2 cut(s)	192, 226
BciT130I	CCWGG	1 cut(s)	61
BclI	TGATCA	1 cut(s)	241
BfaI	CTAG	1 cut(s)	266
BisI	GCNGC	2 cut(s)	163, 211
BlsI	GCNGC	2 cut(s)	164, 212
Bme1390I	CCNGG	1 cut(s)	61
Bme18I	GGWCC	2 cut(s)	63, 279
BmgBI	CACGTC	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	63, 279
BmrFI	CCNGG	1 cut(s)	61
BmsI	GCATC	1 cut(s)	247
BpmI	CTGGAG	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	135
BsaJI	CCNNGG	4 cut(s)	39, 69, 163, 218
BsaWI	WCCGGW	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 234
Bse118I	RCCGGY	1 cut(s)	74
BseAI	TCCGGA	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	61
BseDI	CCNNGG	4 cut(s)	39, 69, 163, 218
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	2 cut(s)	60, 234
BseX3I	CGGCCG	2 cut(s)	94, 142
BseXI	GCAGC	1 cut(s)	197
Bsh1236I	CGCG	1 cut(s)	165
Bsh1285I	CGRYCG	2 cut(s)	97, 145
BshFI	GGCC	4 cut(s)	74, 78, 96, 144
BsiEI	CGRYCG	2 cut(s)	97, 145
BsiSI	CCGG	2 cut(s)	75, 235
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	2 cut(s)	60, 234
BsmFI	GGGAC	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	4 cut(s)	74, 78, 96, 144
Bsp13I	TCCGGA	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	241, 286
BspACI	CCGC	3 cut(s)	163, 165, 208
BspANI	GGCC	4 cut(s)	74, 78, 96, 144
BspEI	TCCGGA	1 cut(s)	234
BspFNI	CGCG	1 cut(s)	165
BsrFI	RCCGGY	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	4 cut(s)	39, 69, 163, 218
BssMI	GATC	2 cut(s)	241, 286
BssT1I	CCWWGG	3 cut(s)	39, 69, 218
Bst2UI	CCWGG	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	113
BstC8I	GCNNGC	2 cut(s)	35, 76
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	262
BstFNI	CGCG	1 cut(s)	165
BstKTI	GATC	2 cut(s)	244, 289
BstMBI	GATC	2 cut(s)	241, 286
BstMCI	CGRYCG	2 cut(s)	97, 145
BstNI	CCWGG	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	59
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	197
BstZI	CGGCCG	2 cut(s)	94, 142
BsuRI	GGCC	4 cut(s)	74, 78, 96, 144
BtgI	CCRYGG	1 cut(s)	163
BtrI	CACGTC	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	262
Cac8I	GCNNGC	2 cut(s)	35, 76
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	63, 279
Cfr42I	CCGCGG	1 cut(s)	166
Csp6I	GTAC	2 cut(s)	127, 263
CviAII	CATG	1 cut(s)	276
CviJI	RGCY	6 cut(s)	37, 74, 78, 96, 144, 292
CviKI_1	RGCY	6 cut(s)	37, 74, 78, 96, 144, 292
CviQI	GTAC	2 cut(s)	127, 263
DpnI	GATC	2 cut(s)	243, 288
DpnII	GATC	2 cut(s)	241, 286
EaeI	YGGCCR	2 cut(s)	94, 142
EagI	CGGCCG	2 cut(s)	94, 142
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
EclXI	CGGCCG	2 cut(s)	94, 142
Eco130I	CCWWGG	3 cut(s)	39, 69, 218
Eco47I	GGWCC	2 cut(s)	63, 279
Eco52I	CGGCCG	2 cut(s)	94, 142
EcoO109I	RGGNCCY	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	59
EcoT14I	CCWWGG	3 cut(s)	39, 69, 218
ErhI	CCWWGG	3 cut(s)	39, 69, 218
FaeI	CATG	1 cut(s)	279
FaiI	YATR	5 cut(s)	50, 197, 231, 277, 331
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	1 cut(s)	275
FauI	CCCGC	1 cut(s)	215
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	2 cut(s)	163, 211
FokI	GGATG	1 cut(s)	269
FseI	GGCCGGCC	1 cut(s)	78
Fsp4HI	GCNGC	2 cut(s)	163, 211
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	2 cut(s)	163, 211
GsuI	CTGGAG	1 cut(s)	43
HaeIII	GGCC	4 cut(s)	74, 78, 96, 144
HapII	CCGG	2 cut(s)	75, 235
Hin1II	CATG	1 cut(s)	279
HinfI	GANTC	1 cut(s)	138
HpaII	CCGG	2 cut(s)	75, 235
Hpy188III	TCNNGA	2 cut(s)	235, 282
Hpy99I	CGWCG	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	279
Kpn2I	TCCGGA	1 cut(s)	234
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Ksp22I	TGATCA	1 cut(s)	241
KspI	CCGCGG	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	241, 286
LpnPI	CCDG	6 cut(s)	46, 73, 88, 105, 248, 295
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	90
MalI	GATC	2 cut(s)	243, 288
MboI	GATC	2 cut(s)	241, 286
MboII	GAAGA	2 cut(s)	100, 297
MluCI	AATT	3 cut(s)	83, 183, 188
MlyI	GAGTC	1 cut(s)	147
MnlI	CCTC	6 cut(s)	23, 76, 89, 122, 159, 161
MroI	TCCGGA	1 cut(s)	234
MroNI	GCCGGC	1 cut(s)	74
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	2 cut(s)	165, 210
MspI	CCGG	2 cut(s)	75, 235
MspR9I	CCNGG	1 cut(s)	61
Mva1269I	GAATGC	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	61
MvnI	CGCG	1 cut(s)	165
NaeI	GCCGGC	1 cut(s)	76
NdeII	GATC	2 cut(s)	241, 286
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	1 cut(s)	279
PctI	GAATGC	1 cut(s)	213
PdiI	GCCGGC	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	164, 212
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PpuMI	RGGWCCY	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	59
PspPI	GGNCC	2 cut(s)	63, 279
PspPPI	RGGWCCY	1 cut(s)	63
RigI	GGCCGGCC	1 cut(s)	78
RsaI	GTAC	2 cut(s)	128, 264
RsaNI	GTAC	2 cut(s)	127, 263
RseI	CAYNNNNRTG	1 cut(s)	255
SacII	CCGCGG	1 cut(s)	166
SatI	GCNGC	2 cut(s)	163, 211
Sau3AI	GATC	2 cut(s)	241, 286
Sau96I	GGNCC	2 cut(s)	63, 279
SchI	GAGTC	1 cut(s)	147
ScrFI	CCNGG	1 cut(s)	61
SetI	ASST	4 cut(s)	65, 93, 273, 294
SfaNI	GCATC	1 cut(s)	247
Sfr303I	CCGCGG	1 cut(s)	166
SgrBI	CCGCGG	1 cut(s)	166
SinI	GGWCC	2 cut(s)	63, 279
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
Sse9I	AATT	3 cut(s)	83, 183, 188
SsiI	CCGC	3 cut(s)	163, 165, 208
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	59
StyI	CCWWGG	3 cut(s)	39, 69, 218
TaiI	ACGT	1 cut(s)	93
TasI	AATT	3 cut(s)	83, 183, 188
TatI	WGTACW	1 cut(s)	262
TauI	GCSGC	1 cut(s)	165
TseI	GCWGC	1 cut(s)	210
TspDTI	ATGAA	1 cut(s)	291
VpaK11BI	GGWCC	2 cut(s)	63, 279
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.