RLG00000032929
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014866
Physical Location & Seq
Reverse (-)
21076365 .. 21078337
1973 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032929

Sequence Viewer

Length: 948 bp
ATGAGTTCTCCTAGTTTCAAGGGTGGCAGAGGCAAGCCCAAGGCGACCATATCCGTCTCCAGGTCCTCCAAGGCCGGCCTCCAATTTCACGTCGGCCGTATCGCTCTCTTCCTCAAATCAGGCAAGTACGCCAAGCGAGTCGGCCGTCCTCAAGTATCTCGCCACGGAGGACCAATTGCGTTTGTTCCAAAATCTTCTGGCCTAATTTCTCTCGTTCTATCACACTCAGCCATTGTAATGGCCATTGATCTGATTGAGTGGTTTTGCTCTGAAGCTGCAATTTCCTCTGAGAAGAAAAAGAATGAGAAGGGAGGCTCTTCTAGGAAAGCTAATCCCATTCCTGACTATGTCCATGTACACAAATTCGTGTTTGCCTTCTCGGAGAAACCTGTGTGCTCTTTCGAAGGTCATTTGGATGCTGTACTAGACCTATCATGGTCCAGAGATCAGCTATTGCTTTCATCTTCAATGGACAAAACTATTAGATTATGGGATATGGTGACCAAGAGTTGTTTAAAAATGTTTGCCCACAATGATTATGGTAAGAAGCATCTATACATACATAGTGCAGAAGGCAGCATATGCAGCTGCTTTAAGAATGTGAGGCCAAGTGCAGAAGACCTGGCAGAGGATTTGGCTTTGATAGTAACCTCATGTTGGAAAGAGGATCCAAATGATCGGCCCAACTTTAGTCAAATTATACAGATGCTCATGCATTATCTCTCTACTATTTCACCGTCAAAACCTGCAATCCCCCAATGGATATTCAGATCTGATAATGTTGTACTGCCACCAGAGTCTCCCGGTACTAGTTCTTTGATGGCTACAGACAATGAATTGGGCGAAACCCCAAAAGCAGACATGGAAGAGAAGTCCAAATTTAGTGTCAGCATTGATGTTCCTGGGAAAGATACATATCATTTTCAGCCTCACCAGAGAGAAGAATAG

Protein Analysis

316

Amino Acids

34.96

Weight (kDa)

8.89

Isoelectric Point (pI)

50.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_1st PF25173 127 - 179 1.2e-08 WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 128 - 177 7.5e-07 WDR36/Utp21 second beta-propeller domain
WD40 PF00400 129 - 165 1.5e-08 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 130 - 178 1e-07 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 132 - 178 1.6e-07 THOC3 beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 134 - 176 9.1e-06 CAF1B/HIR1 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 754
AclWI GGATC 2 cut(s) 662, 675
AcoI YGGCCR 3 cut(s) 94, 142, 240
AcsI RAATTY 2 cut(s) 362, 878
AcuI CTGAAG 1 cut(s) 291
AfaI GTAC 5 cut(s) 128, 357, 423, 786, 808
AfiI CCNNNNNNNGG 3 cut(s) 60, 628, 657
AgsI TTSAA 2 cut(s) 19, 468
AhlI ACTAGT 1 cut(s) 809
AjiI CACGTC 1 cut(s) 91
AjnI CCWGG 3 cut(s) 59, 621, 901
AluBI AGCT 4 cut(s) 275, 329, 451, 588
AluI AGCT 4 cut(s) 275, 329, 451, 588
Alw21I GWGCWC 1 cut(s) 398
Alw26I GTCTC 2 cut(s) 61, 804
AlwI GGATC 2 cut(s) 662, 675
AoxI GGCC 8 cut(s) 72, 76, 94, 142, 199, 240, 605, 680
ApeKI GCWGC 4 cut(s) 275, 576, 585, 588
ApoI RAATTY 2 cut(s) 362, 878
ArsI GACNNNNNNTTYG 2 cut(s) 870, 902
AspS9I GGNCC 4 cut(s) 63, 170, 438, 681
AsuC2I CCSGG 1 cut(s) 804
AsuHPI GGTGA 3 cut(s) 511, 726, 923
AsuII TTCGAA 1 cut(s) 402
AvaII GGWCC 3 cut(s) 63, 170, 438
BalI TGGCCA 1 cut(s) 242
BamHI GGATCC 1 cut(s) 667
BarI GAAGNNNNNNTAC 2 cut(s) 539, 571
BbsI GAAGAC 1 cut(s) 624
Bbv12I GWGCWC 1 cut(s) 398
BbvI GCAGC 4 cut(s) 262, 575, 588, 597
BccI CCATC 1 cut(s) 814
BceAI ACGGC 2 cut(s) 81, 129
BciT130I CCWGG 3 cut(s) 61, 623, 903
BcnI CCSGG 1 cut(s) 804
BcoDI GTCTC 2 cut(s) 61, 804
BcuI ACTAGT 1 cut(s) 809
BfaI CTAG 4 cut(s) 12, 321, 425, 810
BfmI CTRYAG 1 cut(s) 825
BfuAI ACCTGC 1 cut(s) 754
BglII AGATCT 1 cut(s) 770
BisI GCNGC 4 cut(s) 276, 577, 586, 589
BlsI GCNGC 4 cut(s) 277, 578, 587, 590
Bme1390I CCNGG 4 cut(s) 61, 623, 804, 903
Bme18I GGWCC 3 cut(s) 63, 170, 438
BmgBI CACGTC 1 cut(s) 91
BmgT120I GGNCC 4 cut(s) 63, 170, 438, 681
BmiI GGNNCC 1 cut(s) 669
BmrFI CCNGG 4 cut(s) 61, 623, 804, 903
BmsI GCATC 3 cut(s) 406, 559, 696
BpiI GAAGAC 1 cut(s) 624
BpmI CTGGAG 1 cut(s) 43
Bpu14I TTCGAA 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 135
BpuMI CCSGG 1 cut(s) 804
BsaBI GATNNNNATC 1 cut(s) 915
BsaJI CCNNGG 4 cut(s) 39, 69, 163, 902
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 628, 657
Bse118I RCCGGY 1 cut(s) 74
Bse8I GATNNNNATC 1 cut(s) 915
BseBI CCWGG 3 cut(s) 61, 623, 903
BseDI CCNNGG 4 cut(s) 39, 69, 163, 902
BseGI GGATG 1 cut(s) 421
BseJI GATNNNNATC 1 cut(s) 915
BseLI CCNNNNNNNGG 3 cut(s) 60, 628, 657
BseMII CTCAG 2 cut(s) 240, 279
BseX3I CGGCCG 2 cut(s) 94, 142
BseXI GCAGC 4 cut(s) 262, 575, 588, 597
BsgI GTGCAG 2 cut(s) 588, 633
Bsh1285I CGRYCG 2 cut(s) 97, 145
BshFI GGCC 8 cut(s) 74, 78, 96, 144, 201, 242, 607, 682
BsiEI CGRYCG 2 cut(s) 97, 145
BsiHKAI GWGCWC 1 cut(s) 398
BsiSI CCGG 2 cut(s) 75, 804
BslI CCNNNNNNNGG 3 cut(s) 60, 628, 657
BsmAI GTCTC 2 cut(s) 61, 804
BsmBI CGTCTC 1 cut(s) 61
BsnI GGCC 8 cut(s) 74, 78, 96, 144, 201, 242, 607, 682
Bsp119I TTCGAA 1 cut(s) 402
Bsp1286I GDGCHC 1 cut(s) 398
Bsp1407I TGTACA 1 cut(s) 355
Bsp143I GATC 5 cut(s) 247, 445, 667, 676, 770
BspANI GGCC 8 cut(s) 74, 78, 96, 144, 201, 242, 607, 682
BspCNI CTCAG 2 cut(s) 239, 280
BspLI GGNNCC 1 cut(s) 669
BspMI ACCTGC 1 cut(s) 754
BspPI GGATC 2 cut(s) 662, 675
BspQI GCTCTTC 1 cut(s) 322
BspT104I TTCGAA 1 cut(s) 402
BsrFI RCCGGY 1 cut(s) 74
BsrGI TGTACA 1 cut(s) 355
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 4 cut(s) 39, 69, 163, 902
BssMI GATC 5 cut(s) 247, 445, 667, 676, 770
BssT1I CCWWGG 2 cut(s) 39, 69
Bst2UI CCWGG 3 cut(s) 61, 623, 903
Bst4CI ACNGT 1 cut(s) 738
Bst6I CTCTTC 3 cut(s) 113, 322, 861
BstAPI GCANNNNNTGC 1 cut(s) 582
BstAUI TGTACA 1 cut(s) 355
BstBI TTCGAA 1 cut(s) 402
BstC8I GCNNGC 2 cut(s) 35, 76
BstDEI CTNAG 2 cut(s) 226, 288
BstDSI CCRYGG 1 cut(s) 163
BstEII GGTNACC 1 cut(s) 499
BstENI CCTNNNNNAGG 1 cut(s) 626
BstF5I GGATG 1 cut(s) 421
BstKTI GATC 5 cut(s) 250, 448, 670, 679, 773
BstMAI GTCTC 2 cut(s) 61, 804
BstMBI GATC 5 cut(s) 247, 445, 667, 676, 770
BstMCI CGRYCG 2 cut(s) 97, 145
BstMWI GCNNNNNNNGC 2 cut(s) 582, 585
BstNI CCWGG 3 cut(s) 61, 623, 903
BstPI GGTNACC 1 cut(s) 499
BstSCI CCNGG 4 cut(s) 59, 621, 802, 901
BstSFI CTRYAG 1 cut(s) 825
BstV1I GCAGC 4 cut(s) 262, 575, 588, 597
BstV2I GAAGAC 1 cut(s) 624
BstX2I RGATCY 2 cut(s) 667, 770
BstXI CCANNNNNNTGG 1 cut(s) 238
BstYI RGATCY 2 cut(s) 667, 770
BstZI CGGCCG 2 cut(s) 94, 142
BsuRI GGCC 8 cut(s) 74, 78, 96, 144, 201, 242, 607, 682
BtgI CCRYGG 1 cut(s) 163
BtrI CACGTC 1 cut(s) 91
BtsCI GGATG 1 cut(s) 421
BveI ACCTGC 1 cut(s) 754
Cac8I GCNNGC 2 cut(s) 35, 76
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 4 cut(s) 63, 170, 438, 681
Csp6I GTAC 5 cut(s) 127, 356, 422, 785, 807
CviAII CATG 5 cut(s) 353, 435, 654, 712, 862
CviQI GTAC 5 cut(s) 127, 356, 422, 785, 807
DdeI CTNAG 2 cut(s) 226, 288
DpnI GATC 5 cut(s) 249, 447, 669, 678, 772
DpnII GATC 5 cut(s) 247, 445, 667, 676, 770
DraI TTTAAA 1 cut(s) 516
EaeI YGGCCR 3 cut(s) 94, 142, 240
EagI CGGCCG 2 cut(s) 94, 142
Eam1104I CTCTTC 3 cut(s) 113, 322, 861
EarI CTCTTC 3 cut(s) 113, 322, 861
EclXI CGGCCG 2 cut(s) 94, 142
Eco130I CCWWGG 2 cut(s) 39, 69
Eco47I GGWCC 3 cut(s) 63, 170, 438
Eco52I CGGCCG 2 cut(s) 94, 142
Eco57I CTGAAG 1 cut(s) 291
Eco91I GGTNACC 1 cut(s) 499
EcoNI CCTNNNNNAGG 1 cut(s) 626
EcoO109I RGGNCCY 1 cut(s) 63
EcoO65I GGTNACC 1 cut(s) 499
EcoRII CCWGG 3 cut(s) 59, 621, 901
EcoT14I CCWWGG 2 cut(s) 39, 69
EcoT22I ATGCAT 1 cut(s) 717
ErhI CCWWGG 2 cut(s) 39, 69
Esp3I CGTCTC 1 cut(s) 61
FaeI CATG 5 cut(s) 356, 438, 657, 715, 865
FatI CATG 5 cut(s) 352, 434, 653, 711, 861
FauNDI CATATG 1 cut(s) 581
Fnu4HI GCNGC 4 cut(s) 276, 577, 586, 589
FokI GGATG 1 cut(s) 428
FseI GGCCGGCC 1 cut(s) 78
Fsp4HI GCNGC 4 cut(s) 276, 577, 586, 589
FspBI CTAG 4 cut(s) 12, 321, 425, 810
GluI GCNGC 4 cut(s) 276, 577, 586, 589
GsuI CTGGAG 1 cut(s) 43
HaeIII GGCC 8 cut(s) 74, 78, 96, 144, 201, 242, 607, 682
HapII CCGG 2 cut(s) 75, 804
Hin1II CATG 5 cut(s) 356, 438, 657, 715, 865
HinfI GANTC 2 cut(s) 138, 797
HpaII CCGG 2 cut(s) 75, 804
HphI GGTGA 3 cut(s) 511, 726, 923
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 6 cut(s) 252, 271, 289, 382, 770, 775
Hpy188III TCNNGA 2 cut(s) 341, 441
Hpy8I GTNNAC 1 cut(s) 358
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 4 cut(s) 301, 385, 398, 566
HpyCH4III ACNGT 1 cut(s) 738
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 6 cut(s) 278, 569, 585, 614, 715, 749
HpyF10VI GCNNNNNNNGC 2 cut(s) 582, 585
HpyF3I CTNAG 2 cut(s) 226, 288
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 5 cut(s) 356, 438, 657, 715, 865
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
Kzo9I GATC 5 cut(s) 247, 445, 667, 676, 770
LguI GCTCTTC 1 cut(s) 322
Lsp1109I GCAGC 4 cut(s) 262, 575, 588, 597
LweI GCATC 3 cut(s) 406, 559, 696
MaeI CTAG 4 cut(s) 12, 321, 425, 810
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 2 cut(s) 499, 646
MalI GATC 5 cut(s) 249, 447, 669, 678, 772
MboI GATC 5 cut(s) 247, 445, 667, 676, 770
MboII GAAGA 7 cut(s) 100, 186, 304, 309, 456, 629, 878
MfeI CAATTG 1 cut(s) 174
MflI RGATCY 2 cut(s) 667, 770
MhlI GDGCHC 1 cut(s) 398
MlsI TGGCCA 1 cut(s) 242
MluCI AATT 8 cut(s) 83, 174, 204, 279, 362, 696, 836, 878
MluNI TGGCCA 1 cut(s) 242
MlyI GAGTC 2 cut(s) 147, 806
MmeI TCCRAC 1 cut(s) 638
Mox20I TGGCCA 1 cut(s) 242
Mph1103I ATGCAT 1 cut(s) 717
MroNI GCCGGC 1 cut(s) 74
MscI TGGCCA 1 cut(s) 242
MseI TTAA 2 cut(s) 515, 594
MslI CAYNNNNRTG 2 cut(s) 236, 414
Msp20I TGGCCA 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 588
MspI CCGG 2 cut(s) 75, 804
MspR9I CCNGG 4 cut(s) 61, 623, 804, 903
MunI CAATTG 1 cut(s) 174
MvaI CCWGG 3 cut(s) 61, 623, 903
MwoI GCNNNNNNNGC 2 cut(s) 582, 585
NaeI GCCGGC 1 cut(s) 76
NciI CCSGG 1 cut(s) 804
NdeI CATATG 1 cut(s) 581
NdeII GATC 5 cut(s) 247, 445, 667, 676, 770
NgoMIV GCCGGC 1 cut(s) 74
NlaIII CATG 5 cut(s) 356, 438, 657, 715, 865
NlaIV GGNNCC 1 cut(s) 669
NmuCI GTSAC 1 cut(s) 499
NsiI ATGCAT 1 cut(s) 717
NspV TTCGAA 1 cut(s) 402
PciSI GCTCTTC 1 cut(s) 322
PdiI GCCGGC 1 cut(s) 76
PflFI GACNNNGTC 1 cut(s) 347
PkrI GCNGC 4 cut(s) 277, 578, 587, 590
PleI GAGTC 2 cut(s) 146, 805
PpsI GAGTC 2 cut(s) 146, 805
PpuMI RGGWCCY 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 63
Psp6I CCWGG 3 cut(s) 59, 621, 901
PspEI GGTNACC 1 cut(s) 499
PspGI CCWGG 3 cut(s) 59, 621, 901
PspN4I GGNNCC 1 cut(s) 669
PspPI GGNCC 4 cut(s) 63, 170, 438, 681
PspPPI RGGWCCY 1 cut(s) 63
PsuI RGATCY 2 cut(s) 667, 770
PsyI GACNNNGTC 1 cut(s) 347
PvuII CAGCTG 1 cut(s) 588
RigI GGCCGGCC 1 cut(s) 78
RsaI GTAC 5 cut(s) 128, 357, 423, 786, 808
RsaNI GTAC 5 cut(s) 127, 356, 422, 785, 807
RseI CAYNNNNRTG 2 cut(s) 236, 414
SapI GCTCTTC 1 cut(s) 322
SaqAI TTAA 2 cut(s) 515, 594
SatI GCNGC 4 cut(s) 276, 577, 586, 589
Sau3AI GATC 5 cut(s) 247, 445, 667, 676, 770
Sau96I GGNCC 4 cut(s) 63, 170, 438, 681
SchI GAGTC 2 cut(s) 147, 806
ScrFI CCNGG 4 cut(s) 61, 623, 804, 903
SduI GDGCHC 1 cut(s) 398
SfaNI GCATC 3 cut(s) 406, 559, 696
SfcI CTRYAG 1 cut(s) 825
SfuI TTCGAA 1 cut(s) 402
SinI GGWCC 3 cut(s) 63, 170, 438
SmiMI CAYNNNNRTG 2 cut(s) 236, 414
SmlI CTYRAG 1 cut(s) 150
SmoI CTYRAG 1 cut(s) 150
SpeI ACTAGT 1 cut(s) 809
Sse9I AATT 8 cut(s) 83, 174, 204, 279, 362, 696, 836, 878
SspMI CTAG 4 cut(s) 12, 321, 425, 810
StyD4I CCNGG 4 cut(s) 59, 621, 802, 901
StyI CCWWGG 2 cut(s) 39, 69
TaaI ACNGT 1 cut(s) 738
TaiI ACGT 1 cut(s) 93
TaqI TCGA 1 cut(s) 402
TasI AATT 8 cut(s) 83, 174, 204, 279, 362, 696, 836, 878
TatI WGTACW 3 cut(s) 355, 421, 784
Tru1I TTAA 2 cut(s) 515, 594
Tru9I TTAA 2 cut(s) 515, 594
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 4 cut(s) 275, 576, 585, 588
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 2 cut(s) 450, 849
TspGWI ACGGA 2 cut(s) 43, 180
Tth111I GACNNNGTC 1 cut(s) 347
VpaK11BI GGWCC 3 cut(s) 63, 170, 438
XagI CCTNNNNNAGG 1 cut(s) 626
XapI RAATTY 2 cut(s) 362, 878
XcmI CCANNNNNNNNNTGG 1 cut(s) 536
XspI CTAG 4 cut(s) 12, 321, 425, 810
Zsp2I ATGCAT 1 cut(s) 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.