Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0014866

Physical Location & Seq

Genomic Coordinates Forward (+)

67874044 .. 67874975

Gene Structure 932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG486700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAGTTCTCATAGTTTCAAGGGTGGCAGAGGCAAGCCCAAGGCCACCATATCCGTCTCCAGATCCTCCAAGGCCGGCCTCCAATTTCACGTCGGCCGTATCGCTCTCTTCCTCAAATCAGGCAAGTACGCCAAGCGAGTTGGCCGTCCTCAAGTATCTCGCCGCGGAGGAAAAGAAAACGAAATTGAATTAGATATAGAACGAACCCGCTGCATTCCTTGGTGTCCCCATATCCGGATCGATCAATGTGTCTTAGCTCTGAAGCTGCAATTTCCTCTGAGAAGAAAAAGAAGGGGAAGGGAGGCTCTTCTAGGAAAGCTAATCCCATTCCTGACTATGTCCATGTACACGAATTCGTGTTTGCCCTCTCGGAGAAACCTGTGTCTCTTTCGAAGGTCATTTGGATGTTGTACTGGACCTATCATGGTACAGAGATCAGCTATTGCTTTCATCTTCAATGGACAAAACTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

157

Amino Acids

17.77

Weight (kDa)

11.21

Isoelectric Point (pI)

72.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014866)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007378 RLG00000013741 RLG00000014032 RLG00000023877 RLG00000029730 RLG00000032243 RLG00000032929
rosa_multiflora	Rmu_co8064554.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410470
rosa_samantha	Rh1BG141200 Rh1DG173400 Rh2AG180400 Rh5BG165700 Rh5BG464700 Rh5CG486700 Rh6BG252900
rosa_wichuraiana	Rw2G031050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	165
AccIII	TCCGGA	1 cut(s)	234
AciI	CCGC	3 cut(s)	163, 165, 208
AclWI	GGATC	2 cut(s)	57, 245
AcoI	YGGCCR	2 cut(s)	94, 142
AcsI	RAATTY	1 cut(s)	352
AcuI	CTGAAG	1 cut(s)	281
AfaI	GTAC	4 cut(s)	128, 347, 412, 429
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	3 cut(s)	19, 188, 457
AjiI	CACGTC	1 cut(s)	91
AluBI	AGCT	4 cut(s)	257, 265, 319, 440
AluI	AGCT	4 cut(s)	257, 265, 319, 440
Alw26I	GTCTC	2 cut(s)	61, 389
AlwI	GGATC	2 cut(s)	57, 245
Aor13HI	TCCGGA	1 cut(s)	234
AoxI	GGCC	5 cut(s)	42, 72, 76, 94, 142
ApeKI	GCWGC	2 cut(s)	210, 265
ApoI	RAATTY	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	416
AsuII	TTCGAA	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	416
BbvI	GCAGC	2 cut(s)	197, 252
BceAI	ACGGC	2 cut(s)	81, 129
BcgI	CGANNNNNNTGC	2 cut(s)	192, 226
BcoDI	GTCTC	2 cut(s)	61, 389
BfaI	CTAG	1 cut(s)	311
BisI	GCNGC	3 cut(s)	163, 211, 266
BlsI	GCNGC	3 cut(s)	164, 212, 267
Bme18I	GGWCC	1 cut(s)	416
BmgBI	CACGTC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	416
BpmI	CTGGAG	1 cut(s)	43
Bpu14I	TTCGAA	1 cut(s)	391
BpuEI	CTTGAG	1 cut(s)	135
Bsa29I	ATCGAT	1 cut(s)	240
BsaJI	CCNNGG	4 cut(s)	39, 69, 163, 218
BsaWI	WCCGGW	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	418
BseAI	TCCGGA	1 cut(s)	234
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	4 cut(s)	39, 69, 163, 218
BseGI	GGATG	1 cut(s)	410
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	1 cut(s)	418
BseX3I	CGGCCG	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	197, 252
Bsh1236I	CGCG	1 cut(s)	165
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	5 cut(s)	44, 74, 78, 96, 144
BshVI	ATCGAT	1 cut(s)	240
BsiEI	CGRYCG	1 cut(s)	97
BsiSI	CCGG	2 cut(s)	75, 235
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmAI	GTCTC	2 cut(s)	61, 389
BsmBI	CGTCTC	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	5 cut(s)	44, 74, 78, 96, 144
Bsp119I	TTCGAA	1 cut(s)	391
Bsp13I	TCCGGA	1 cut(s)	234
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	4 cut(s)	62, 237, 241, 434
BspACI	CCGC	3 cut(s)	163, 165, 208
BspANI	GGCC	5 cut(s)	44, 74, 78, 96, 144
BspCNI	CTCAG	1 cut(s)	270
BspDI	ATCGAT	1 cut(s)	240
BspEI	TCCGGA	1 cut(s)	234
BspFNI	CGCG	1 cut(s)	165
BspPI	GGATC	2 cut(s)	57, 245
BspQI	GCTCTTC	1 cut(s)	312
BspT104I	TTCGAA	1 cut(s)	391
BsrFI	RCCGGY	1 cut(s)	74
BsrGI	TGTACA	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	418
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	4 cut(s)	39, 69, 163, 218
BssMI	GATC	4 cut(s)	62, 237, 241, 434
BssT1I	CCWWGG	3 cut(s)	39, 69, 218
Bst4CI	ACNGT	1 cut(s)	470
Bst6I	CTCTTC	2 cut(s)	113, 312
BstAUI	TGTACA	1 cut(s)	345
BstBI	TTCGAA	1 cut(s)	391
BstC8I	GCNNGC	2 cut(s)	35, 76
BstDEI	CTNAG	2 cut(s)	253, 278
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	410
BstFNI	CGCG	1 cut(s)	165
BstKTI	GATC	4 cut(s)	65, 240, 244, 437
BstMAI	GTCTC	2 cut(s)	61, 389
BstMBI	GATC	4 cut(s)	62, 237, 241, 434
BstMCI	CGRYCG	1 cut(s)	97
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	2 cut(s)	197, 252
BstX2I	RGATCY	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	62
BstZI	CGGCCG	1 cut(s)	94
Bsu15I	ATCGAT	1 cut(s)	240
BsuRI	GGCC	5 cut(s)	44, 74, 78, 96, 144
BsuTUI	ATCGAT	1 cut(s)	240
BtgI	CCRYGG	1 cut(s)	163
BtrI	CACGTC	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	410
Cac8I	GCNNGC	2 cut(s)	35, 76
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	416
Cfr42I	CCGCGG	1 cut(s)	166
ClaI	ATCGAT	1 cut(s)	240
Csp6I	GTAC	4 cut(s)	127, 346, 411, 428
CviAII	CATG	2 cut(s)	343, 424
CviQI	GTAC	4 cut(s)	127, 346, 411, 428
DdeI	CTNAG	2 cut(s)	253, 278
DpnI	GATC	4 cut(s)	64, 239, 243, 436
DpnII	GATC	4 cut(s)	62, 237, 241, 434
EaeI	YGGCCR	2 cut(s)	94, 142
EagI	CGGCCG	1 cut(s)	94
Eam1104I	CTCTTC	2 cut(s)	113, 312
EarI	CTCTTC	2 cut(s)	113, 312
EclXI	CGGCCG	1 cut(s)	94
Eco130I	CCWWGG	3 cut(s)	39, 69, 218
Eco47I	GGWCC	1 cut(s)	416
Eco52I	CGGCCG	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	281
EcoRI	GAATTC	1 cut(s)	352
EcoT14I	CCWWGG	3 cut(s)	39, 69, 218
ErhI	CCWWGG	3 cut(s)	39, 69, 218
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	2 cut(s)	346, 427
FaiI	YATR	7 cut(s)	12, 50, 197, 231, 338, 344, 425
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	2 cut(s)	342, 423
FauI	CCCGC	1 cut(s)	215
Fnu4HI	GCNGC	3 cut(s)	163, 211, 266
FokI	GGATG	1 cut(s)	417
FseI	GGCCGGCC	1 cut(s)	78
Fsp4HI	GCNGC	3 cut(s)	163, 211, 266
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	3 cut(s)	163, 211, 266
GsuI	CTGGAG	1 cut(s)	43
HaeIII	GGCC	5 cut(s)	44, 74, 78, 96, 144
HapII	CCGG	2 cut(s)	75, 235
Hin1II	CATG	2 cut(s)	346, 427
HpaII	CCGG	2 cut(s)	75, 235
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	3 cut(s)	261, 279, 372
Hpy188III	TCNNGA	3 cut(s)	60, 235, 331
Hpy8I	GTNNAC	1 cut(s)	348
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	3 cut(s)	285, 291, 387
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	2 cut(s)	213, 268
HpyF3I	CTNAG	2 cut(s)	253, 278
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	346, 427
Kpn2I	TCCGGA	1 cut(s)	234
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
KspI	CCGCGG	1 cut(s)	166
Kzo9I	GATC	4 cut(s)	62, 237, 241, 434
LguI	GCTCTTC	1 cut(s)	312
LpnPI	CCDG	7 cut(s)	73, 88, 105, 248, 344, 392, 399
Lsp1109I	GCAGC	2 cut(s)	197, 252
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	90
MalI	GATC	4 cut(s)	64, 239, 243, 436
MboI	GATC	4 cut(s)	62, 237, 241, 434
MboII	GAAGA	4 cut(s)	100, 294, 299, 445
MflI	RGATCY	1 cut(s)	62
MluCI	AATT	5 cut(s)	83, 183, 188, 269, 352
MnlI	CCTC	9 cut(s)	23, 76, 89, 122, 159, 161, 285, 295, 376
MroI	TCCGGA	1 cut(s)	234
MroNI	GCCGGC	1 cut(s)	74
MslI	CAYNNNNRTG	1 cut(s)	403
MspA1I	CMGCKG	2 cut(s)	165, 210
MspI	CCGG	2 cut(s)	75, 235
Mva1269I	GAATGC	1 cut(s)	213
MvnI	CGCG	1 cut(s)	165
NaeI	GCCGGC	1 cut(s)	76
NdeII	GATC	4 cut(s)	62, 237, 241, 434
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	2 cut(s)	346, 427
NspV	TTCGAA	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	312
PctI	GAATGC	1 cut(s)	213
PdiI	GCCGGC	1 cut(s)	76
PflFI	GACNNNGTC	1 cut(s)	337
PkrI	GCNGC	3 cut(s)	164, 212, 267
PspPI	GGNCC	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	62
PsyI	GACNNNGTC	1 cut(s)	337
RigI	GGCCGGCC	1 cut(s)	78
RsaI	GTAC	4 cut(s)	128, 347, 412, 429
RsaNI	GTAC	4 cut(s)	127, 346, 411, 428
RseI	CAYNNNNRTG	1 cut(s)	403
SacII	CCGCGG	1 cut(s)	166
SapI	GCTCTTC	1 cut(s)	312
SatI	GCNGC	3 cut(s)	163, 211, 266
Sau3AI	GATC	4 cut(s)	62, 237, 241, 434
Sau96I	GGNCC	1 cut(s)	416
SetI	ASST	8 cut(s)	93, 259, 267, 321, 381, 398, 421, 442
Sfr303I	CCGCGG	1 cut(s)	166
SfuI	TTCGAA	1 cut(s)	391
SgrBI	CCGCGG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	403
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
Sse9I	AATT	5 cut(s)	83, 183, 188, 269, 352
SsiI	CCGC	3 cut(s)	163, 165, 208
SspMI	CTAG	1 cut(s)	311
StyI	CCWWGG	3 cut(s)	39, 69, 218
TaaI	ACNGT	1 cut(s)	470
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	2 cut(s)	240, 391
TasI	AATT	5 cut(s)	83, 183, 188, 269, 352
TatI	WGTACW	2 cut(s)	345, 410
TauI	GCSGC	1 cut(s)	165
TseI	GCWGC	2 cut(s)	210, 265
TspDTI	ATGAA	1 cut(s)	439
TspGWI	ACGGA	1 cut(s)	43
Tth111I	GACNNNGTC	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	416
XapI	RAATTY	1 cut(s)	352
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.