Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8064554.1

Orthogroup ID

OG0014866

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 272

Gene Structure 272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8064554.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

atgagtggaaaggaaggtgggtcgaccaagggaggcagaggcaagccgaaggccaccaagtctgtgtccaggtctagcaaagccgggcttcaatttccggtgggtaggatcgcccggtttctcaagtccggcaagtatgccgagcgtgtcggcgccggagctccggtttatctctctgccgtgcttgaatacctggcagctgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

68

Amino Acids

7.02

Weight (kDa)

10.4

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014866)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007378 RLG00000013741 RLG00000014032 RLG00000023877 RLG00000029730 RLG00000032243 RLG00000032929
rosa_multiflora	Rmu_co8064554.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410470
rosa_samantha	Rh1BG141200 Rh1DG173400 Rh2AG180400 Rh5BG165700 Rh5BG464700 Rh5CG486700 Rh6BG252900
rosa_wichuraiana	Rw2G031050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	23
AclWI	GGATC	1 cut(s)	116
AcyI	GRCGYC	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	92, 188
AjnI	CCWGG	2 cut(s)	68, 192
AluBI	AGCT	2 cut(s)	161, 200
AluI	AGCT	2 cut(s)	161, 200
Alw21I	GWGCWC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	116
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	155
AsuC2I	CCSGG	2 cut(s)	85, 115
BanI	GGYRCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	163
BceAI	ACGGC	1 cut(s)	164
BciT130I	CCWGG	2 cut(s)	70, 194
BcnI	CCSGG	2 cut(s)	85, 115
BfaI	CTAG	1 cut(s)	75
BfoI	RGCGCY	1 cut(s)	156
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	4 cut(s)	70, 85, 115, 194
BmiI	GGNNCC	1 cut(s)	154
BmrFI	CCNGG	4 cut(s)	70, 85, 115, 194
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	2 cut(s)	85, 115
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	2 cut(s)	97, 163
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
BseBI	CCWGG	2 cut(s)	70, 194
BseDI	CCNNGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	53
BshNI	GGYRCC	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	163
BsiSI	CCGG	6 cut(s)	84, 98, 115, 129, 156, 164
BsnI	GGCC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	108
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	154
BspPI	GGATC	1 cut(s)	116
BspT107I	GGYRCC	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	1 cut(s)	108
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	27
Bst2UI	CCWGG	2 cut(s)	70, 194
BstACI	GRCGYC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	1 cut(s)	201
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
BstNI	CCWGG	2 cut(s)	70, 194
BstSCI	CCNGG	4 cut(s)	68, 83, 113, 192
BsuRI	GGCC	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	44
CfoI	GCGC	1 cut(s)	155
CviJI	RGCY	6 cut(s)	46, 53, 83, 88, 161, 200
CviKI_1	RGCY	6 cut(s)	46, 53, 83, 88, 161, 200
DdeI	CTNAG	1 cut(s)	201
DinI	GGCGCC	1 cut(s)	154
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
Ecl136II	GAGCTC	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	161
EcoRII	CCWGG	2 cut(s)	68, 192
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	163
EgeI	GGCGCC	1 cut(s)	154
EheI	GGCGCC	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	27
FaiI	YATR	1 cut(s)	138
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FblI	GTMKAC	1 cut(s)	23
Fnu4HI	GCNGC	1 cut(s)	198
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	1 cut(s)	198
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	6 cut(s)	84, 98, 115, 129, 156, 164
HhaI	GCGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	153
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HpaII	CCGG	6 cut(s)	84, 98, 115, 129, 156, 164
Hpy166II	GTNNAC	1 cut(s)	24
Hpy8I	GTNNAC	1 cut(s)	24
HpyAV	CCTTC	2 cut(s)	8, 43
HpyF3I	CTNAG	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	153
HspAI	GCGC	1 cut(s)	153
KasI	GGCGCC	1 cut(s)	152
Kzo9I	GATC	1 cut(s)	108
LmnI	GCTCC	2 cut(s)	158, 166
LpnPI	CCDG	9 cut(s)	55, 82, 97, 111, 128, 142, 169, 177, 179
MaeI	CTAG	1 cut(s)	75
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	1 cut(s)	92
Mly113I	GGCGCC	1 cut(s)	153
MnlI	CCTC	2 cut(s)	26, 32
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	6 cut(s)	84, 98, 115, 129, 156, 164
MspR9I	CCNGG	4 cut(s)	70, 85, 115, 194
MvaI	CCWGG	2 cut(s)	70, 194
NarI	GGCGCC	1 cut(s)	153
NciI	CCSGG	2 cut(s)	85, 115
NdeII	GATC	1 cut(s)	108
NlaIV	GGNNCC	1 cut(s)	154
NmeAIII	GCCGAG	1 cut(s)	166
PkrI	GCNGC	1 cut(s)	199
PluTI	GGCGCC	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	163
Psp6I	CCWGG	2 cut(s)	68, 192
PspGI	CCWGG	2 cut(s)	68, 192
PspN4I	GGNNCC	1 cut(s)	154
PvuII	CAGCTG	1 cut(s)	200
SacI	GAGCTC	1 cut(s)	163
SalI	GTCGAC	1 cut(s)	22
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	108
ScrFI	CCNGG	4 cut(s)	70, 85, 115, 194
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	5 cut(s)	19, 74, 163, 195, 202
SfoI	GGCGCC	1 cut(s)	154
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	92
SspDI	GGCGCC	1 cut(s)	152
SspMI	CTAG	1 cut(s)	75
SstI	GAGCTC	1 cut(s)	163
StyD4I	CCNGG	4 cut(s)	68, 83, 113, 192
StyI	CCWWGG	1 cut(s)	27
TaqI	TCGA	1 cut(s)	23
TasI	AATT	1 cut(s)	92
TseI	GCWGC	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	23
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.