Rh1DG173400

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0014866
Physical Location & Seq
Forward (+)
35691530 .. 35693385
1856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG173400.1

Sequence Viewer

Length: 348 bp
ATGGCCATTGATCTGATTGAGTGGTTTTGGTTGTTTGTTTGCCGTGAAACTGAAGGAAAAGAAAACGAAATTGAATTAGATATAGAACGAACCCGCTGCCTTCCTTGGTGTCCGGATCGATCAATGTGTCTTAGCTCTGAAGCTGCAATTTCCTCTGAGAAGAAAAAGAAGGGGAAGGGAGGCTCTTCTAGGAAAGCTAATCCCATTCCTGACTATGACCATGTACACGAATTCGTGTTTGCCCTCTCGGAGAAACCTGTGTGCTCTTTCGAAGGTCATTTGGATGCTGTACTGGACCTATCATGGTCCAGAGATCAGGTCAGTTTTTACCTAATCTTTGCCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

115

Amino Acids

13.24

Weight (kDa)

5.03

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 112
AciI CCGC 1 cut(s) 94
AclWI GGATC 1 cut(s) 123
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 230
AcuI CTGAAG 2 cut(s) 72, 159
AfaI GTAC 2 cut(s) 225, 291
AgsI TTSAA 1 cut(s) 74
AluBI AGCT 3 cut(s) 135, 143, 197
AluI AGCT 3 cut(s) 135, 143, 197
Alw21I GWGCWC 1 cut(s) 266
AlwI GGATC 1 cut(s) 123
Aor13HI TCCGGA 1 cut(s) 112
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 96, 143
ApoI RAATTY 1 cut(s) 230
AspS9I GGNCC 2 cut(s) 295, 306
AsuII TTCGAA 1 cut(s) 270
AvaII GGWCC 2 cut(s) 295, 306
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 266
BbvI GCAGC 2 cut(s) 83, 130
BceAI ACGGC 1 cut(s) 27
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BfaI CTAG 1 cut(s) 189
BisI GCNGC 2 cut(s) 97, 144
BlsI GCNGC 2 cut(s) 98, 145
Bme18I GGWCC 2 cut(s) 295, 306
BmgT120I GGNCC 2 cut(s) 295, 306
BmsI GCATC 1 cut(s) 274
Bpu14I TTCGAA 1 cut(s) 270
Bsa29I ATCGAT 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 104
BsaWI WCCGGW 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 297
BseAI TCCGGA 1 cut(s) 112
BseCI ATCGAT 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 104
BseGI GGATG 1 cut(s) 289
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 297
BseXI GCAGC 2 cut(s) 83, 130
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 266
BsiSI CCGG 1 cut(s) 113
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 266
Bsp13I TCCGGA 1 cut(s) 112
Bsp1407I TGTACA 1 cut(s) 223
Bsp143I GATC 4 cut(s) 10, 115, 119, 313
BspACI CCGC 1 cut(s) 94
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 148
BspDI ATCGAT 1 cut(s) 118
BspEI TCCGGA 1 cut(s) 112
BspPI GGATC 1 cut(s) 123
BspQI GCTCTTC 1 cut(s) 190
BspT104I TTCGAA 1 cut(s) 270
BsrGI TGTACA 1 cut(s) 223
BsrI ACTGG 1 cut(s) 297
BssECI CCNNGG 1 cut(s) 104
BssMI GATC 4 cut(s) 10, 115, 119, 313
BssT1I CCWWGG 1 cut(s) 104
Bst6I CTCTTC 1 cut(s) 190
BstAUI TGTACA 1 cut(s) 223
BstBI TTCGAA 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 131, 156
BstF5I GGATG 1 cut(s) 289
BstKTI GATC 4 cut(s) 13, 118, 122, 316
BstMBI GATC 4 cut(s) 10, 115, 119, 313
BstV1I GCAGC 2 cut(s) 83, 130
Bsu15I ATCGAT 1 cut(s) 118
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 118
BtsCI GGATG 1 cut(s) 289
Cfr13I GGNCC 2 cut(s) 295, 306
ClaI ATCGAT 1 cut(s) 118
Csp6I GTAC 2 cut(s) 224, 290
CviAII CATG 2 cut(s) 221, 303
CviJI RGCY 5 cut(s) 5, 135, 143, 183, 197
CviKI_1 RGCY 5 cut(s) 5, 135, 143, 183, 197
CviQI GTAC 2 cut(s) 224, 290
DdeI CTNAG 2 cut(s) 131, 156
DpnI GATC 4 cut(s) 12, 117, 121, 315
DpnII GATC 4 cut(s) 10, 115, 119, 313
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 104
Eco47I GGWCC 2 cut(s) 295, 306
Eco57I CTGAAG 2 cut(s) 72, 159
EcoRI GAATTC 1 cut(s) 230
EcoT14I CCWWGG 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 104
FaeI CATG 2 cut(s) 224, 306
FaiI YATR 4 cut(s) 83, 216, 222, 304
FatI CATG 2 cut(s) 220, 302
FauI CCCGC 1 cut(s) 101
Fnu4HI GCNGC 2 cut(s) 97, 144
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 2 cut(s) 97, 144
FspBI CTAG 1 cut(s) 189
GluI GCNGC 2 cut(s) 97, 144
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 113
Hin1II CATG 2 cut(s) 224, 306
HpaII CCGG 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 4 cut(s) 15, 139, 157, 250
Hpy188III TCNNGA 3 cut(s) 113, 209, 309
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 5 cut(s) 47, 110, 163, 169, 266
HpyCH4V TGCA 1 cut(s) 146
HpyF3I CTNAG 2 cut(s) 131, 156
Hsp92II CATG 2 cut(s) 224, 306
Kpn2I TCCGGA 1 cut(s) 112
Kzo9I GATC 4 cut(s) 10, 115, 119, 313
LguI GCTCTTC 1 cut(s) 190
LpnPI CCDG 6 cut(s) 126, 222, 270, 278, 302, 322
Lsp1109I GCAGC 2 cut(s) 83, 130
LweI GCATC 1 cut(s) 274
MaeI CTAG 1 cut(s) 189
MalI GATC 4 cut(s) 12, 117, 121, 315
MboI GATC 4 cut(s) 10, 115, 119, 313
MboII GAAGA 2 cut(s) 172, 177
MhlI GDGCHC 1 cut(s) 266
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 69, 74, 147, 230
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 3 cut(s) 163, 173, 254
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 112
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 282
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 1 cut(s) 113
NdeII GATC 4 cut(s) 10, 115, 119, 313
NlaIII CATG 2 cut(s) 224, 306
NspV TTCGAA 1 cut(s) 270
PciSI GCTCTTC 1 cut(s) 190
PkrI GCNGC 2 cut(s) 98, 145
PspPI GGNCC 2 cut(s) 295, 306
RsaI GTAC 2 cut(s) 225, 291
RsaNI GTAC 2 cut(s) 224, 290
RseI CAYNNNNRTG 1 cut(s) 282
SapI GCTCTTC 1 cut(s) 190
SatI GCNGC 2 cut(s) 97, 144
Sau3AI GATC 4 cut(s) 10, 115, 119, 313
Sau96I GGNCC 2 cut(s) 295, 306
SduI GDGCHC 1 cut(s) 266
SetI ASST 8 cut(s) 137, 145, 199, 259, 277, 300, 321, 333
SfaNI GCATC 1 cut(s) 274
SfuI TTCGAA 1 cut(s) 270
SinI GGWCC 2 cut(s) 295, 306
SmiMI CAYNNNNRTG 1 cut(s) 282
Sse9I AATT 4 cut(s) 69, 74, 147, 230
SsiI CCGC 1 cut(s) 94
SspMI CTAG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 104
TaqI TCGA 2 cut(s) 118, 270
TasI AATT 4 cut(s) 69, 74, 147, 230
TatI WGTACW 2 cut(s) 223, 289
TseI GCWGC 2 cut(s) 96, 143
VpaK11BI GGWCC 2 cut(s) 295, 306
XapI RAATTY 1 cut(s) 230
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.