Rh6BG252900

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0014866
Physical Location & Seq
Reverse (-)
46411185 .. 46411862
678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG252900.1

Sequence Viewer

Length: 294 bp
ATGTGTCTTAGCTCTGAAGCTGCAATTTCCTCTGAGAAGAAAAAGAAGGAGAAGGGAGGCTCTTCTAGGAAAGCTAATCCCATTCCTGACTATGTCCATGTACACGAATTCGTGTTTGCCTTCTCGGAGAAACCTGTGTGCTCTTTCGAAGGTCATTTGGATGCTGTACTGGACCTATCATGGTCCAGAGATCAGCTATTGCTTTCATCTTCAATGGACAAAACTGTTAGATTATGGGATATGGTGACTAAGAGTTGTTTAAAAATGTTTGCCCACAATGATTATGCTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

97

Amino Acids

10.96

Weight (kDa)

6.89

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_1st PF25173 42 - 93 2.3e-09 WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 43 - 93 6.8e-08 WDR36/Utp21 second beta-propeller domain
WD40 PF00400 44 - 80 2.1e-09 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 44 - 94 7.4e-09 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 47 - 92 1.4e-08 THOC3 beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 49 - 91 7.3e-07 CAF1B/HIR1 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 51 - 92 7.1e-07 TEP-1 second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 292
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 2 cut(s) 102, 168
AgsI TTSAA 1 cut(s) 213
AluBI AGCT 4 cut(s) 12, 20, 74, 196
AluI AGCT 4 cut(s) 12, 20, 74, 196
Alw21I GWGCWC 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 172, 183
AsuHPI GGTGA 1 cut(s) 256
AsuII TTCGAA 1 cut(s) 147
AvaII GGWCC 2 cut(s) 172, 183
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 7
BfaI CTAG 1 cut(s) 66
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme18I GGWCC 2 cut(s) 172, 183
BmgT120I GGNCC 2 cut(s) 172, 183
BmsI GCATC 1 cut(s) 151
Bpu14I TTCGAA 1 cut(s) 147
Bse1I ACTGG 1 cut(s) 174
BseGI GGATG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 143
Bsp119I TTCGAA 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 143
Bsp1407I TGTACA 1 cut(s) 100
Bsp143I GATC 1 cut(s) 190
BspCNI CTCAG 1 cut(s) 25
BspQI GCTCTTC 1 cut(s) 67
BspT104I TTCGAA 1 cut(s) 147
BsrGI TGTACA 1 cut(s) 100
BsrI ACTGG 1 cut(s) 174
BssMI GATC 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 67
BstAUI TGTACA 1 cut(s) 100
BstBI TTCGAA 1 cut(s) 147
BstDEI CTNAG 3 cut(s) 8, 33, 249
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 7
BtsCI GGATG 1 cut(s) 166
Cfr13I GGNCC 2 cut(s) 172, 183
Csp6I GTAC 2 cut(s) 101, 167
CviAII CATG 2 cut(s) 98, 180
CviJI RGCY 5 cut(s) 12, 20, 60, 74, 196
CviKI_1 RGCY 5 cut(s) 12, 20, 60, 74, 196
CviQI GTAC 2 cut(s) 101, 167
DdeI CTNAG 3 cut(s) 8, 33, 249
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
DraI TTTAAA 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
Eco47I GGWCC 2 cut(s) 172, 183
Eco57I CTGAAG 1 cut(s) 36
EcoRI GAATTC 1 cut(s) 107
FaeI CATG 2 cut(s) 101, 183
FaiI YATR 7 cut(s) 93, 99, 181, 235, 242, 285, 292
FatI CATG 2 cut(s) 97, 179
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 1 cut(s) 66
GluI GCNGC 1 cut(s) 21
Hin1II CATG 2 cut(s) 101, 183
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 3 cut(s) 16, 34, 127
Hpy188III TCNNGA 2 cut(s) 86, 186
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 4 cut(s) 40, 46, 130, 143
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 1 cut(s) 23
HpyF3I CTNAG 3 cut(s) 8, 33, 249
Hsp92II CATG 2 cut(s) 101, 183
Kzo9I GATC 1 cut(s) 190
LguI GCTCTTC 1 cut(s) 67
LpnPI CCDG 4 cut(s) 99, 147, 155, 199
Lsp1109I GCAGC 1 cut(s) 7
LweI GCATC 1 cut(s) 151
MaeI CTAG 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 244
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 3 cut(s) 49, 54, 201
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 2 cut(s) 24, 107
MnlI CCTC 2 cut(s) 40, 50
MseI TTAA 1 cut(s) 260
MslI CAYNNNNRTG 1 cut(s) 159
NdeII GATC 1 cut(s) 190
NlaIII CATG 2 cut(s) 101, 183
NmuCI GTSAC 1 cut(s) 244
NspV TTCGAA 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 67
PflFI GACNNNGTC 1 cut(s) 92
PkrI GCNGC 1 cut(s) 22
PsiI TTATAA 1 cut(s) 292
PspPI GGNCC 2 cut(s) 172, 183
PsyI GACNNNGTC 1 cut(s) 92
RsaI GTAC 2 cut(s) 102, 168
RsaNI GTAC 2 cut(s) 101, 167
RseI CAYNNNNRTG 1 cut(s) 159
SapI GCTCTTC 1 cut(s) 67
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 2 cut(s) 172, 183
SduI GDGCHC 1 cut(s) 143
SetI ASST 7 cut(s) 14, 22, 76, 136, 154, 177, 198
SfaNI GCATC 1 cut(s) 151
SfuI TTCGAA 1 cut(s) 147
SinI GGWCC 2 cut(s) 172, 183
SmiMI CAYNNNNRTG 1 cut(s) 159
Sse9I AATT 2 cut(s) 24, 107
SspMI CTAG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 226
TaqI TCGA 1 cut(s) 147
TasI AATT 2 cut(s) 24, 107
TatI WGTACW 2 cut(s) 100, 166
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 1 cut(s) 195
Tth111I GACNNNGTC 1 cut(s) 92
VpaK11BI GGWCC 2 cut(s) 172, 183
XapI RAATTY 1 cut(s) 107
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.