Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0011625

Physical Location & Seq

Genomic Coordinates Forward (+)

22806024 .. 22810959

Gene Structure 4936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007912

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAGGTTGACAACTGGTGGCCATACGTTCGAGCGGCGTGTGCAAGCACTTGATCGAAGCAGCAATAGCACATGTTACCCTCCACTTTTGTCACCATCAGCAATCACATTTTCAGTTTACAGCAATTTTCGCAAGTATCGTGCATTATTTGAGGCTGTTATTAAGCTAGCAACTCTTTTGAGTGGGAACATGAGAGAGTTGTCTCATATGTGGGCACCTCCAATATATAGAAGATTGCTTAGCTCTGATAAGAGAGACAGTGATATGTCAGAAAGGTGTCTACTGAAGATTAGATCCACAATCATACCTTCTCCAATAGATCTCTCCAAGATTCAAACTATTCAAGCATGGGGATGGTATATCCGCTTACTAGGGTCTCATGCCTTGAAGAACAGACATTTAATTAATGATATGCTGAAAATTCCCAAGAAAACATTTTCAGATAACGACTCGCAAGTTCAGATTGCTTCCCAGAGAATGAAAGTGGATATATATCGTAGCTCAAACTGTATCCCTTACTGGCATGGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04550 map04550

Pfam Domains

Protein Families

Rif1_N

Protein Analysis

178

Amino Acids

20.51

Weight (kDa)

10.01

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011625)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007912
rosa_roxburghii	Rroxscaffold_1G00013790 Rroxscaffold_3G00218570 Rroxscaffold_3G00218580 Rroxscaffold_3G00252300 Rroxscaffold_6G00425440 Rroxscaffold_7G00199340
rosa_rugosa	Rorug01G0267500 Rorug01G0267600 Rorug03G0293600
rosa_samantha	Rh2BG557900 Rh4AG086500 Rh4CG083600 Rh4CG094300 Rh4DG195600 Rh5BG296200 Rh5BG488700 Rh5DG337900 Rh5DG565200
rosa_wichuraiana	Rw5G048490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AccBSI	CCGCTC	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	280
AciI	CCGC	2 cut(s)	34, 364
AclWI	GGATC	1 cut(s)	288
AcoI	YGGCCR	1 cut(s)	19
AcsI	RAATTY	1 cut(s)	420
AcuI	CTGAAG	1 cut(s)	305
AflIII	ACRYGT	1 cut(s)	71
AgsI	TTSAA	3 cut(s)	335, 344, 388
AluBI	AGCT	3 cut(s)	166, 243, 501
AluI	AGCT	3 cut(s)	166, 243, 501
Alw26I	GTCTC	3 cut(s)	207, 249, 381
AlwI	GGATC	1 cut(s)	288
AoxI	GGCC	1 cut(s)	19
ApeKI	GCWGC	1 cut(s)	60
ApoI	RAATTY	1 cut(s)	420
AseI	ATTAAT	1 cut(s)	405
AsuHPI	GGTGA	1 cut(s)	84
AsuNHI	GCTAGC	1 cut(s)	166
BaeGI	GKGCMC	1 cut(s)	217
BalI	TGGCCA	1 cut(s)	21
BanI	GGYRCC	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	72
BccI	CCATC	2 cut(s)	103, 348
BciVI	GTATCC	1 cut(s)	521
BcoDI	GTCTC	3 cut(s)	207, 249, 381
BfaI	CTAG	2 cut(s)	167, 371
BfuI	GTATCC	1 cut(s)	521
BglII	AGATCT	1 cut(s)	319
BisI	GCNGC	2 cut(s)	35, 61
BlpI	GCTNAGC	1 cut(s)	239
BlsI	GCNGC	2 cut(s)	36, 62
BmiI	GGNNCC	1 cut(s)	216
BmtI	GCTAGC	1 cut(s)	170
Bpu1102I	GCTNAGC	1 cut(s)	239
BsaBI	GATNNNNATC	1 cut(s)	492
BsaI	GGTCTC	1 cut(s)	381
Bse1I	ACTGG	2 cut(s)	19, 524
Bse8I	GATNNNNATC	1 cut(s)	492
BseGI	GGATG	1 cut(s)	359
BseJI	GATNNNNATC	1 cut(s)	492
BseNI	ACTGG	2 cut(s)	19, 524
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	1 cut(s)	72
BshFI	GGCC	1 cut(s)	21
BshNI	GGYRCC	1 cut(s)	214
BsmAI	GTCTC	3 cut(s)	207, 249, 381
BsnI	GGCC	1 cut(s)	21
Bso31I	GGTCTC	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	3 cut(s)	52, 293, 319
Bsp1720I	GCTNAGC	1 cut(s)	239
BspACI	CCGC	2 cut(s)	34, 364
BspANI	GGCC	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	216
BspOI	GCTAGC	1 cut(s)	170
BspPI	GGATC	1 cut(s)	288
BspT107I	GGYRCC	1 cut(s)	214
BspTNI	GGTCTC	1 cut(s)	381
BsrBI	CCGCTC	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	19, 524
BssMI	GATC	3 cut(s)	52, 293, 319
Bst4CI	ACNGT	2 cut(s)	260, 509
BstC8I	GCNNGC	2 cut(s)	45, 168
BstDEI	CTNAG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	359
BstKTI	GATC	3 cut(s)	55, 296, 322
BstMAI	GTCTC	3 cut(s)	207, 249, 381
BstMBI	GATC	3 cut(s)	52, 293, 319
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 66, 129
BstNSI	RCATGY	1 cut(s)	75
BstSLI	GKGCMC	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	72
BstX2I	RGATCY	2 cut(s)	293, 319
BstYI	RGATCY	2 cut(s)	293, 319
BsuI	GTATCC	1 cut(s)	521
BsuRI	GGCC	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	359
BtsIMutI	CAGTG	1 cut(s)	265
Cac8I	GCNNGC	2 cut(s)	45, 168
CviAII	CATG	5 cut(s)	72, 190, 348, 380, 524
CviJI	RGCY	5 cut(s)	21, 155, 166, 243, 501
CviKI_1	RGCY	5 cut(s)	21, 155, 166, 243, 501
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	3 cut(s)	54, 295, 321
DpnII	GATC	3 cut(s)	52, 293, 319
EaeI	YGGCCR	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	305
FaeI	CATG	5 cut(s)	75, 193, 351, 383, 527
FatI	CATG	5 cut(s)	71, 189, 347, 379, 523
FauNDI	CATATG	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	280
Fnu4HI	GCNGC	2 cut(s)	35, 61
FokI	GGATG	1 cut(s)	366
Fsp4HI	GCNGC	2 cut(s)	35, 61
FspBI	CTAG	2 cut(s)	167, 371
GluI	GCNGC	2 cut(s)	35, 61
HaeIII	GGCC	1 cut(s)	21
Hin1II	CATG	5 cut(s)	75, 193, 351, 383, 527
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	2 cut(s)	331, 449
HphI	GGTGA	1 cut(s)	84
Hpy166II	GTNNAC	3 cut(s)	9, 118, 281
Hpy188I	TCNGA	4 cut(s)	247, 271, 442, 462
Hpy8I	GTNNAC	3 cut(s)	9, 118, 281
HpyAV	CCTTC	1 cut(s)	318
HpyCH4III	ACNGT	2 cut(s)	260, 509
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	2 cut(s)	43, 143
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 66, 129
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	5 cut(s)	75, 193, 351, 383, 527
Kzo9I	GATC	3 cut(s)	52, 293, 319
LpnPI	CCDG	2 cut(s)	485, 505
Lsp1109I	GCAGC	1 cut(s)	72
MaeI	CTAG	2 cut(s)	167, 371
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	2 cut(s)	74, 90
MalI	GATC	3 cut(s)	54, 295, 321
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	3 cut(s)	52, 293, 319
MboII	GAAGA	3 cut(s)	243, 298, 400
MflI	RGATCY	2 cut(s)	293, 319
MhlI	GDGCHC	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	21
MluCI	AATT	3 cut(s)	124, 402, 420
MluNI	TGGCCA	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	443
MnlI	CCTC	3 cut(s)	90, 145, 228
Mox20I	TGGCCA	1 cut(s)	21
MscI	TGGCCA	1 cut(s)	21
MseI	TTAA	4 cut(s)	162, 401, 405, 532
MslI	CAYNNNNRTG	1 cut(s)	352
Msp20I	TGGCCA	1 cut(s)	21
MwoI	GCNNNNNNNGC	3 cut(s)	40, 66, 129
NdeI	CATATG	1 cut(s)	207
NdeII	GATC	3 cut(s)	52, 293, 319
NheI	GCTAGC	1 cut(s)	166
NlaIII	CATG	5 cut(s)	75, 193, 351, 383, 527
NlaIV	GGNNCC	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	90
NspI	RCATGY	1 cut(s)	75
PacI	TTAATTAA	1 cut(s)	405
PciI	ACATGT	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	331
PkrI	GCNGC	2 cut(s)	36, 62
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
PscI	ACATGT	1 cut(s)	71
PshBI	ATTAAT	1 cut(s)	405
PspN4I	GGNNCC	1 cut(s)	216
PsuI	RGATCY	2 cut(s)	293, 319
RseI	CAYNNNNRTG	1 cut(s)	352
SaqAI	TTAA	4 cut(s)	162, 401, 405, 532
SatI	GCNGC	2 cut(s)	35, 61
Sau3AI	GATC	3 cut(s)	52, 293, 319
SchI	GAGTC	1 cut(s)	443
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	8 cut(s)	8, 29, 168, 220, 245, 278, 310, 503
SmiMI	CAYNNNNRTG	1 cut(s)	352
Sse9I	AATT	3 cut(s)	124, 402, 420
SsiI	CCGC	2 cut(s)	34, 364
SspMI	CTAG	2 cut(s)	167, 371
TaaI	ACNGT	2 cut(s)	260, 509
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	2 cut(s)	30, 55
TasI	AATT	3 cut(s)	124, 402, 420
TauI	GCSGC	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	4 cut(s)	162, 401, 405, 532
Tru9I	TTAA	4 cut(s)	162, 401, 405, 532
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	1 cut(s)	60
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	1 cut(s)	494
TspRI	CASTG	1 cut(s)	265
VspI	ATTAAT	1 cut(s)	405
XapI	RAATTY	1 cut(s)	420
XceI	RCATGY	1 cut(s)	75
XmiI	GTMKAC	1 cut(s)	280
XspI	CTAG	2 cut(s)	167, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.