Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011625

Physical Location & Seq

Genomic Coordinates Forward (+)

37941754 .. 37962599

Gene Structure 20846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0267500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCTTATGGGACGCTTGAAGTTGTTCTTGTTAATGCTAAAGGCCTCCACAACACTGATTTTCTCTCAGCTAAAATGGATCCCTATGTCATTTTCACTTTGAAGACCCAAGAGAAGAAAAGCACTGTTGCCAAAGGGCAAGGATCTGAACCAGCATGGAATGAAAGCTTCTTGTTCACCGTCACCAATGATGTTTCGGAACTTCATTTGAAAATAATGGATGAAGACACCTTTACCGCTGATGATTATGTTGGAGAAGCAACCATTTCTTTAGAGCCAGTGTTCAATGTAGGAATTGTTCCACCAACTGCGTACAACGTTGTCAACAAGGACCAGGAATATCATGGGGAGATCAAAATTGGACTCAATTTCTCTCCTGAGCCGGAGACGAACAGCTTCTGTTCAGGACACTATGGGGGTGTTGAGGATTATGGTGGATGGAAAGAATCAAGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0006805 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0009056 GO:0009058 GO:0009410 GO:0009628 GO:0009636 GO:0009651 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019438 GO:0019748 GO:0035251 GO:0042178 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046527 GO:0050896 GO:0051716 GO:0070887 GO:0071466 GO:0071704 GO:0080043 GO:0080044 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

152

Amino Acids

16.8

Weight (kDa)

4.49

Isoelectric Point (pI)

33.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	4 - 94	6e-21	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011625)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007912
rosa_roxburghii	Rroxscaffold_1G00013790 Rroxscaffold_3G00218570 Rroxscaffold_3G00218580 Rroxscaffold_3G00252300 Rroxscaffold_6G00425440 Rroxscaffold_7G00199340
rosa_rugosa	Rorug01G0267500 Rorug01G0267600 Rorug03G0293600
rosa_samantha	Rh2BG557900 Rh4AG086500 Rh4CG083600 Rh4CG094300 Rh4DG195600 Rh5BG296200 Rh5BG488700 Rh5DG337900 Rh5DG565200
rosa_wichuraiana	Rw5G048490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	237
AclI	AACGTT	1 cut(s)	318
AclWI	GGATC	3 cut(s)	74, 87, 151
AfaI	GTAC	1 cut(s)	314
AgsI	TTSAA	4 cut(s)	20, 103, 211, 286
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	3 cut(s)	71, 168, 396
AluI	AGCT	3 cut(s)	71, 168, 396
Alw26I	GTCTC	1 cut(s)	380
AlwI	GGATC	3 cut(s)	74, 87, 151
AlwNI	CAGNNNCTG	1 cut(s)	399
AoxI	GGCC	1 cut(s)	43
Asp700I	GAANNNNTTC	2 cut(s)	24, 395
AspS9I	GGNCC	1 cut(s)	331
AsuHPI	GGTGA	2 cut(s)	169, 175
AvaII	GGWCC	1 cut(s)	331
BamHI	GGATCC	1 cut(s)	79
BbsI	GAAGAC	2 cut(s)	110, 231
BccI	CCATC	1 cut(s)	432
BciT130I	CCWGG	1 cut(s)	335
BcoDI	GTCTC	1 cut(s)	380
Bme1390I	CCNGG	1 cut(s)	335
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	335
BpiI	GAAGAC	2 cut(s)	110, 231
Bpu10I	CCTNAGC	1 cut(s)	378
Bse1I	ACTGG	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	335
BseGI	GGATG	2 cut(s)	226, 443
BseMII	CTCAG	2 cut(s)	81, 369
BseNI	ACTGG	1 cut(s)	278
BshFI	GGCC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	383
BslFI	GGGAC	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	380
BsmBI	CGTCTC	1 cut(s)	380
BsmFI	GGGAC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	45
Bsp143I	GATC	3 cut(s)	79, 143, 351
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	2 cut(s)	80, 370
BspLI	GGNNCC	1 cut(s)	81
BspPI	GGATC	3 cut(s)	74, 87, 151
BsrI	ACTGG	1 cut(s)	278
BssMI	GATC	3 cut(s)	79, 143, 351
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	2 cut(s)	127, 181
BstDEI	CTNAG	2 cut(s)	67, 378
BstF5I	GGATG	2 cut(s)	226, 443
BstKTI	GATC	3 cut(s)	82, 146, 354
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	3 cut(s)	79, 143, 351
BstNI	CCWGG	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	333
BstV2I	GAAGAC	2 cut(s)	110, 231
BstX2I	RGATCY	2 cut(s)	79, 143
BstYI	RGATCY	2 cut(s)	79, 143
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	226, 443
BtsIMutI	CAGTG	3 cut(s)	54, 123, 285
CaiI	CAGNNNCTG	1 cut(s)	399
Cfr13I	GGNCC	1 cut(s)	331
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	2 cut(s)	156, 344
CviJI	RGCY	7 cut(s)	5, 45, 71, 168, 277, 382, 396
CviKI_1	RGCY	7 cut(s)	5, 45, 71, 168, 277, 382, 396
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	2 cut(s)	67, 378
DpnI	GATC	3 cut(s)	81, 145, 353
DpnII	GATC	3 cut(s)	79, 143, 351
Eco147I	AGGCCT	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	333
Esp3I	CGTCTC	1 cut(s)	380
FaeI	CATG	2 cut(s)	159, 347
FaiI	YATR	7 cut(s)	9, 87, 157, 249, 345, 414, 432
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	2 cut(s)	155, 343
FokI	GGATG	2 cut(s)	233, 450
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	383
HgaI	GACGC	1 cut(s)	22
Hin1II	CATG	2 cut(s)	159, 347
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	166
HinfI	GANTC	2 cut(s)	363, 446
HpaII	CCGG	1 cut(s)	383
HphI	GGTGA	2 cut(s)	169, 175
Hpy166II	GTNNAC	2 cut(s)	177, 325
Hpy188I	TCNGA	2 cut(s)	148, 199
Hpy188III	TCNNGA	2 cut(s)	377, 405
Hpy8I	GTNNAC	2 cut(s)	177, 325
HpyCH4III	ACNGT	2 cut(s)	127, 181
HpyCH4IV	ACGT	1 cut(s)	318
HpyF3I	CTNAG	2 cut(s)	67, 378
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	159, 347
Kzo9I	GATC	3 cut(s)	79, 143, 351
LpnPI	CCDG	7 cut(s)	165, 291, 320, 347, 390, 390, 396
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	3 cut(s)	81, 145, 353
MboI	GATC	3 cut(s)	79, 143, 351
MboII	GAAGA	3 cut(s)	115, 127, 236
MflI	RGATCY	2 cut(s)	79, 143
MluCI	AATT	3 cut(s)	294, 357, 367
MlyI	GAGTC	1 cut(s)	357
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	2 cut(s)	56, 418
MroXI	GAANNNNTTC	2 cut(s)	24, 395
MseI	TTAA	1 cut(s)	33
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	1 cut(s)	383
MspR9I	CCNGG	1 cut(s)	335
MvaI	CCWGG	1 cut(s)	335
NdeII	GATC	3 cut(s)	79, 143, 351
NlaIII	CATG	2 cut(s)	159, 347
NlaIV	GGNNCC	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	181
PceI	AGGCCT	1 cut(s)	45
PdmI	GAANNNNTTC	2 cut(s)	24, 395
PfeI	GAWTC	1 cut(s)	446
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
Psp1406I	AACGTT	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	1 cut(s)	331
PsrI	GAACNNNNNNTAC	2 cut(s)	282, 314
PstNI	CAGNNNCTG	1 cut(s)	399
PsuI	RGATCY	2 cut(s)	79, 143
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SaqAI	TTAA	1 cut(s)	33
Sau3AI	GATC	3 cut(s)	79, 143, 351
Sau96I	GGNCC	1 cut(s)	331
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	1 cut(s)	335
SetI	ASST	5 cut(s)	73, 170, 233, 321, 398
SinI	GGWCC	1 cut(s)	331
Sse9I	AATT	3 cut(s)	294, 357, 367
SseBI	AGGCCT	1 cut(s)	45
SsiI	CCGC	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	333
TaaI	ACNGT	2 cut(s)	127, 181
TaiI	ACGT	1 cut(s)	321
TasI	AATT	3 cut(s)	294, 357, 367
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	3 cut(s)	61, 130, 285
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	3 cut(s)	177, 194, 237
TspRI	CASTG	3 cut(s)	61, 130, 285
VpaK11BI	GGWCC	1 cut(s)	331
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XmnI	GAANNNNTTC	2 cut(s)	24, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.