Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0011625

Physical Location & Seq

Genomic Coordinates Reverse (-)

87172241 .. 87188958

Gene Structure 16718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG565200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCGTCGAGAAGTGGGAGTGGTTCGAGGTGGGTTAATGGGAGTGAAGTGGAAACTGAGATTGTTCCTTCTGATAATGGAGGCAGAGATGGAGGGCCAAGCGGTCTAGCATTTTCGAACTCTCGTGCCGGTTGCAGCATCGCGGTCCTGATTGGAGCGGGTTGCATTGCCATGGGGATTGTTACCTTGCTCATTAGCGATTGGTTATTGTGGACCCTGCCTCAGGAGATCAGCCACTCTACAACAACAAGGACAAGACCATCATTGTCACGTGGTATGAAGATTCAAACTATTCAAGCATGGGGATGGTATATCCGCTTACCAGGGTCTCATGCCTTGAAGAACAGACATTTAATTAATGATATGCTGAAAATTCCCAAGAAAACATTTTCAGATAACGACTTACAAGTTCAGATTGCTTCCCAGGTTGCCTGTGAAGGTCTTATTAATGCTCTTATTCACCCTCCAATGTTATTACAGTGTGCGAAAAATGCTGCAGAAGAGGATGATGGCATCATGTTGAGTAACTGCGATGTATCTGTCCGCATGTCTTGCTTGAACACATGGTGTTATCTATTACCTAGACTTGATACCTCTCTGAATGATTCTTCAATGATTAACCGGGTAGTAGACCCTATGTTTGAAGCAGCTTTTCAACTTGATCCTAATGGTAAGAGCTTCTGGGCTACGGATCTGTGTGTCAATTTGCTTGATGATTTTATATCAGCAAAATGTAAACCTCTAAACTATGACTATCTTGTGGATTTTCTTATTGATTGGATCCGGCTATTGGCAGAAGACGACATATTTAGTGAGATACCATACCTGGGCGGCGCTGCATCGGTGGTGGTACCTCAGGGCGCCGTTGCACCTCAAGGCGTTAGTGCATCAGAGGCAGGTCAACTTGGGTGGCGGAGATGGGATCAATCGGTCCTTTTGCTTCGACCCCGATATCTAAGAGTTGCAATCTGGGATTTTCAACCCAGATTTGGTATGGTTTGGTTGCTAGGGTGGTGTGATGGCGATCGAGGCCTTGGTGGTGTTAATGCTACGTTGGGCCTTGGTGGTGGGCTAGTGTTTTCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04550 map04550

Pfam Domains

Protein Families

Rif1_N

Protein Analysis

362

Amino Acids

39.63

Weight (kDa)

5.17

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011625)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007912
rosa_roxburghii	Rroxscaffold_1G00013790 Rroxscaffold_3G00218570 Rroxscaffold_3G00218580 Rroxscaffold_3G00252300 Rroxscaffold_6G00425440 Rroxscaffold_7G00199340
rosa_rugosa	Rorug01G0267500 Rorug01G0267600 Rorug03G0293600
rosa_samantha	Rh2BG557900 Rh4AG086500 Rh4CG083600 Rh4CG094300 Rh4DG195600 Rh5BG296200 Rh5BG488700 Rh5DG337900 Rh5DG565200
rosa_wichuraiana	Rw5G048490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	887
Acc65I	GGTACC	1 cut(s)	850
AccB1I	GGYRCC	2 cut(s)	850, 860
AccBSI	CCGCTC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	630
AccII	CGCG	1 cut(s)	143
AciI	CCGC	7 cut(s)	102, 143, 158, 316, 544, 831, 913
AclWI	GGATC	5 cut(s)	656, 699, 775, 788, 930
AcsI	RAATTY	1 cut(s)	372
AcvI	CACGTG	1 cut(s)	272
AcyI	GRCGYC	2 cut(s)	5, 861
AdeI	CACNNNGTG	1 cut(s)	567
AfaI	GTAC	1 cut(s)	852
AfiI	CCNNNNNNNGG	4 cut(s)	223, 790, 827, 989
AgsI	TTSAA	8 cut(s)	287, 296, 340, 559, 612, 644, 656, 980
AjnI	CCWGG	3 cut(s)	322, 423, 825
AluBI	AGCT	2 cut(s)	650, 678
AluI	AGCT	2 cut(s)	650, 678
Alw26I	GTCTC	1 cut(s)	333
AlwI	GGATC	5 cut(s)	656, 699, 775, 788, 930
AoxI	GGCC	3 cut(s)	95, 1030, 1057
ApeKI	GCWGC	4 cut(s)	135, 494, 647, 836
ApoI	RAATTY	1 cut(s)	372
ArsI	GACNNNNNNTTYG	2 cut(s)	623, 655
AseI	ATTAAT	2 cut(s)	357, 447
Asp718I	GGTACC	1 cut(s)	850
AspLEI	GCGC	2 cut(s)	836, 863
AspS9I	GGNCC	5 cut(s)	95, 145, 213, 931, 1057
AsuC2I	CCSGG	1 cut(s)	623
AsuHPI	GGTGA	1 cut(s)	452
AsuII	TTCGAA	1 cut(s)	116
AvaII	GGWCC	3 cut(s)	145, 213, 931
AxyI	CCTNAGG	2 cut(s)	222, 855
BamHI	GGATCC	1 cut(s)	780
BanI	GGYRCC	2 cut(s)	850, 860
BauI	CACGAG	1 cut(s)	123
BbrPI	CACGTG	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	804
BbvI	GCAGC	4 cut(s)	147, 481, 659, 823
BccI	CCATC	6 cut(s)	83, 268, 300, 503, 912, 1013
BceAI	ACGGC	1 cut(s)	848
BciT130I	CCWGG	3 cut(s)	324, 425, 827
BcnI	CCSGG	1 cut(s)	623
BcoDI	GTCTC	1 cut(s)	333
BfaI	CTAG	4 cut(s)	107, 582, 1007, 1073
BfmI	CTRYAG	1 cut(s)	495
BfoI	RGCGCY	2 cut(s)	837, 864
BfuAI	ACCTGC	1 cut(s)	887
BisI	GCNGC	5 cut(s)	136, 495, 648, 832, 837
BlsI	GCNGC	5 cut(s)	137, 496, 649, 833, 838
Bme1390I	CCNGG	4 cut(s)	324, 425, 623, 827
Bme18I	GGWCC	3 cut(s)	145, 213, 931
BmgT120I	GGNCC	5 cut(s)	95, 145, 213, 931, 1057
BmiI	GGNNCC	4 cut(s)	215, 782, 852, 862
BmrFI	CCNGG	4 cut(s)	324, 425, 623, 827
BmsI	GCATC	4 cut(s)	147, 522, 848, 896
BpiI	GAAGAC	1 cut(s)	804
Bpu14I	TTCGAA	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	858
BpuMI	CCSGG	1 cut(s)	623
BsaAI	YACGTR	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	1023
BsaHI	GRCGYC	2 cut(s)	5, 861
BsaI	GGTCTC	1 cut(s)	333
BsaJI	CCNNGG	6 cut(s)	171, 323, 423, 826, 1033, 1060
Bsc4I	CCNNNNNNNGG	4 cut(s)	223, 790, 827, 989
Bse118I	RCCGGY	1 cut(s)	128
Bse21I	CCTNAGG	2 cut(s)	222, 855
Bse3DI	GCAATG	1 cut(s)	165
Bse8I	GATNNNNATC	1 cut(s)	1023
BseBI	CCWGG	3 cut(s)	324, 425, 827
BseDI	CCNNGG	6 cut(s)	171, 323, 423, 826, 1033, 1060
BseGI	GGATG	2 cut(s)	311, 511
BseJI	GATNNNNATC	1 cut(s)	1023
BseLI	CCNNNNNNNGG	4 cut(s)	223, 790, 827, 989
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	3 cut(s)	48, 236, 869
BseXI	GCAGC	4 cut(s)	147, 481, 659, 823
Bsh1236I	CGCG	1 cut(s)	143
Bsh1285I	CGRYCG	1 cut(s)	1027
BshFI	GGCC	3 cut(s)	97, 1032, 1059
BshNI	GGYRCC	2 cut(s)	850, 860
BsiEI	CGRYCG	1 cut(s)	1027
BsiSI	CCGG	3 cut(s)	129, 622, 784
BslI	CCNNNNNNNGG	4 cut(s)	223, 790, 827, 989
BsmAI	GTCTC	1 cut(s)	333
BsnI	GGCC	3 cut(s)	97, 1032, 1059
Bso31I	GGTCTC	1 cut(s)	333
Bsp119I	TTCGAA	1 cut(s)	116
Bsp143I	GATC	6 cut(s)	228, 661, 691, 780, 922, 1024
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	7 cut(s)	102, 143, 158, 316, 544, 831, 913
BspANI	GGCC	3 cut(s)	97, 1032, 1059
BspCNI	CTCAG	3 cut(s)	49, 235, 868
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	4 cut(s)	215, 782, 852, 862
BspMAI	CTGCAG	1 cut(s)	499
BspMI	ACCTGC	1 cut(s)	887
BspPI	GGATC	5 cut(s)	656, 699, 775, 788, 930
BspT104I	TTCGAA	1 cut(s)	116
BspT107I	GGYRCC	2 cut(s)	850, 860
BspTNI	GGTCTC	1 cut(s)	333
BsrBI	CCGCTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	165
BsrFI	RCCGGY	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	6 cut(s)	171, 323, 423, 826, 1033, 1060
BssMI	GATC	6 cut(s)	228, 661, 691, 780, 922, 1024
BssNI	GRCGYC	2 cut(s)	5, 861
BssSI	CACGAG	1 cut(s)	123
BssT1I	CCWWGG	3 cut(s)	171, 1033, 1060
Bst2BI	CACGAG	1 cut(s)	123
Bst2UI	CCWGG	3 cut(s)	324, 425, 827
Bst4CI	ACNGT	1 cut(s)	480
Bst6I	CTCTTC	1 cut(s)	495
BstACI	GRCGYC	2 cut(s)	5, 861
BstAPI	GCANNNNNTGC	1 cut(s)	552
BstBAI	YACGTR	1 cut(s)	272
BstBI	TTCGAA	1 cut(s)	116
BstDEI	CTNAG	4 cut(s)	57, 222, 855, 956
BstDSI	CCRYGG	1 cut(s)	171
BstENI	CCTNNNNNAGG	1 cut(s)	221
BstF5I	GGATG	2 cut(s)	311, 511
BstFNI	CGCG	1 cut(s)	143
BstH2I	RGCGCY	2 cut(s)	837, 864
BstHHI	GCGC	2 cut(s)	836, 863
BstKTI	GATC	6 cut(s)	231, 664, 694, 783, 925, 1027
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	6 cut(s)	228, 661, 691, 780, 922, 1024
BstMCI	CGRYCG	1 cut(s)	1027
BstMWI	GCNNNNNNNGC	4 cut(s)	491, 552, 893, 1029
BstNI	CCWGG	3 cut(s)	324, 425, 827
BstNSI	RCATGY	1 cut(s)	550
BstSCI	CCNGG	4 cut(s)	322, 423, 621, 825
BstSFI	CTRYAG	1 cut(s)	495
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	4 cut(s)	147, 481, 659, 823
BstV2I	GAAGAC	1 cut(s)	804
BstX2I	RGATCY	2 cut(s)	691, 780
BstYI	RGATCY	2 cut(s)	691, 780
Bsu36I	CCTNAGG	2 cut(s)	222, 855
BsuRI	GGCC	3 cut(s)	97, 1032, 1059
BtgI	CCRYGG	1 cut(s)	171
BtgZI	GCGATG	2 cut(s)	124, 546
BtsCI	GGATG	2 cut(s)	311, 511
BtsIMutI	CAGTG	1 cut(s)	485
BveI	ACCTGC	1 cut(s)	887
CfoI	GCGC	2 cut(s)	836, 863
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	5 cut(s)	95, 145, 213, 931, 1057
Csp6I	GTAC	1 cut(s)	851
CspCI	CAANNNNNGTGG	2 cut(s)	890, 925
CviAII	CATG	6 cut(s)	172, 300, 332, 517, 547, 564
CviJI	RGCY	9 cut(s)	97, 234, 650, 678, 686, 787, 1032, 1059, 1072
CviKI_1	RGCY	9 cut(s)	97, 234, 650, 678, 686, 787, 1032, 1059, 1072
CviQI	GTAC	1 cut(s)	851
DdeI	CTNAG	4 cut(s)	57, 222, 855, 956
DinI	GGCGCC	1 cut(s)	862
DpnI	GATC	6 cut(s)	230, 663, 693, 782, 924, 1026
DpnII	GATC	6 cut(s)	228, 661, 691, 780, 922, 1024
DraIII	CACNNNGTG	1 cut(s)	567
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
EciI	GGCGGA	1 cut(s)	928
Eco130I	CCWWGG	3 cut(s)	171, 1033, 1060
Eco147I	AGGCCT	1 cut(s)	1032
Eco31I	GGTCTC	1 cut(s)	333
Eco32I	GATATC	1 cut(s)	953
Eco47I	GGWCC	3 cut(s)	145, 213, 931
Eco72I	CACGTG	1 cut(s)	272
Eco81I	CCTNAGG	2 cut(s)	222, 855
EcoNI	CCTNNNNNAGG	1 cut(s)	221
EcoRII	CCWGG	3 cut(s)	322, 423, 825
EcoRV	GATATC	1 cut(s)	953
EcoT14I	CCWWGG	3 cut(s)	171, 1033, 1060
EgeI	GGCGCC	1 cut(s)	862
EheI	GGCGCC	1 cut(s)	862
ErhI	CCWWGG	3 cut(s)	171, 1033, 1060
FaeI	CATG	6 cut(s)	175, 303, 335, 520, 550, 567
FatI	CATG	6 cut(s)	171, 299, 331, 516, 546, 563
FauI	CCCGC	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	630
Fnu4HI	GCNGC	5 cut(s)	136, 495, 648, 832, 837
FokI	GGATG	2 cut(s)	318, 518
Fsp4HI	GCNGC	5 cut(s)	136, 495, 648, 832, 837
FspBI	CTAG	4 cut(s)	107, 582, 1007, 1073
GlaI	GCGC	2 cut(s)	835, 862
GluI	GCNGC	5 cut(s)	136, 495, 648, 832, 837
HaeII	RGCGCY	2 cut(s)	837, 864
HaeIII	GGCC	3 cut(s)	97, 1032, 1059
HapII	CCGG	3 cut(s)	129, 622, 784
HhaI	GCGC	2 cut(s)	836, 863
Hin1I	GRCGYC	2 cut(s)	5, 861
Hin1II	CATG	6 cut(s)	175, 303, 335, 520, 550, 567
Hin6I	GCGC	2 cut(s)	834, 861
HinP1I	GCGC	2 cut(s)	834, 861
HincII	GTYRAC	1 cut(s)	902
HindII	GTYRAC	1 cut(s)	902
HinfI	GANTC	2 cut(s)	283, 605
HpaII	CCGG	3 cut(s)	129, 622, 784
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	4 cut(s)	213, 631, 737, 902
Hpy188I	TCNGA	5 cut(s)	73, 394, 414, 600, 892
Hpy188III	TCNNGA	3 cut(s)	9, 148, 224
Hpy8I	GTNNAC	4 cut(s)	213, 631, 737, 902
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	78, 431
HpyCH4III	ACNGT	1 cut(s)	480
HpyCH4IV	ACGT	2 cut(s)	271, 1052
HpyCH4V	TGCA	7 cut(s)	135, 165, 497, 839, 869, 887, 965
HpyF10VI	GCNNNNNNNGC	4 cut(s)	491, 552, 893, 1029
HpyF3I	CTNAG	4 cut(s)	57, 222, 855, 956
HpySE526I	ACGT	2 cut(s)	271, 1052
Hsp92I	GRCGYC	2 cut(s)	5, 861
Hsp92II	CATG	6 cut(s)	175, 303, 335, 520, 550, 567
HspAI	GCGC	2 cut(s)	834, 861
KasI	GGCGCC	1 cut(s)	860
KpnI	GGTACC	1 cut(s)	854
Kzo9I	GATC	6 cut(s)	228, 661, 691, 780, 922, 1024
LmnI	GCTCC	1 cut(s)	155
Lsp1109I	GCAGC	4 cut(s)	147, 481, 659, 823
LweI	GCATC	4 cut(s)	147, 522, 848, 896
MaeI	CTAG	4 cut(s)	107, 582, 1007, 1073
MaeII	ACGT	2 cut(s)	271, 1052
MaeIII	GTNAC	3 cut(s)	181, 267, 524
MalI	GATC	6 cut(s)	230, 663, 693, 782, 924, 1026
MbiI	CCGCTC	1 cut(s)	158
MboI	GATC	6 cut(s)	228, 661, 691, 780, 922, 1024
MboII	GAAGA	5 cut(s)	292, 352, 512, 600, 809
MflI	RGATCY	2 cut(s)	691, 780
MluCI	AATT	3 cut(s)	354, 372, 703
Mly113I	GGCGCC	1 cut(s)	861
MseI	TTAA	6 cut(s)	36, 353, 357, 447, 618, 1044
MslI	CAYNNNNRTG	2 cut(s)	170, 304
MspI	CCGG	3 cut(s)	129, 622, 784
MspR9I	CCNGG	4 cut(s)	324, 425, 623, 827
MvaI	CCWGG	3 cut(s)	324, 425, 827
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	4 cut(s)	491, 552, 893, 1029
NarI	GGCGCC	1 cut(s)	861
NciI	CCSGG	1 cut(s)	623
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	6 cut(s)	228, 661, 691, 780, 922, 1024
NlaIII	CATG	6 cut(s)	175, 303, 335, 520, 550, 567
NlaIV	GGNNCC	4 cut(s)	215, 782, 852, 862
NmuCI	GTSAC	1 cut(s)	267
NspI	RCATGY	1 cut(s)	550
NspV	TTCGAA	1 cut(s)	116
PacI	TTAATTAA	1 cut(s)	357
PceI	AGGCCT	1 cut(s)	1032
PfeI	GAWTC	2 cut(s)	283, 605
PkrI	GCNGC	5 cut(s)	137, 496, 649, 833, 838
Ple19I	CGATCG	1 cut(s)	1027
PluTI	GGCGCC	1 cut(s)	864
PmaCI	CACGTG	1 cut(s)	272
PmlI	CACGTG	1 cut(s)	272
Ppu21I	YACGTR	1 cut(s)	272
PshBI	ATTAAT	2 cut(s)	357, 447
Psp6I	CCWGG	3 cut(s)	322, 423, 825
PspCI	CACGTG	1 cut(s)	272
PspGI	CCWGG	3 cut(s)	322, 423, 825
PspN4I	GGNNCC	4 cut(s)	215, 782, 852, 862
PspPI	GGNCC	5 cut(s)	95, 145, 213, 931, 1057
PstI	CTGCAG	1 cut(s)	499
PsuI	RGATCY	2 cut(s)	691, 780
PvuI	CGATCG	1 cut(s)	1027
RsaI	GTAC	1 cut(s)	852
RsaNI	GTAC	1 cut(s)	851
RseI	CAYNNNNRTG	2 cut(s)	170, 304
SaqAI	TTAA	6 cut(s)	36, 353, 357, 447, 618, 1044
SatI	GCNGC	5 cut(s)	136, 495, 648, 832, 837
Sau3AI	GATC	6 cut(s)	228, 661, 691, 780, 922, 1024
Sau96I	GGNCC	5 cut(s)	95, 145, 213, 931, 1057
ScrFI	CCNGG	4 cut(s)	324, 425, 623, 827
SfaNI	GCATC	4 cut(s)	147, 522, 848, 896
SfcI	CTRYAG	1 cut(s)	495
SfoI	GGCGCC	1 cut(s)	862
SfuI	TTCGAA	1 cut(s)	116
SinI	GGWCC	3 cut(s)	145, 213, 931
SmiMI	CAYNNNNRTG	2 cut(s)	170, 304
SmlI	CTYRAG	1 cut(s)	873
SmoI	CTYRAG	1 cut(s)	873
Sse9I	AATT	3 cut(s)	354, 372, 703
SseBI	AGGCCT	1 cut(s)	1032
SsiI	CCGC	7 cut(s)	102, 143, 158, 316, 544, 831, 913
SspDI	GGCGCC	1 cut(s)	860
SspMI	CTAG	4 cut(s)	107, 582, 1007, 1073
StuI	AGGCCT	1 cut(s)	1032
StyD4I	CCNGG	4 cut(s)	322, 423, 621, 825
StyI	CCWWGG	3 cut(s)	171, 1033, 1060
TaaI	ACNGT	1 cut(s)	480
TaiI	ACGT	2 cut(s)	274, 1055
TaqI	TCGA	5 cut(s)	8, 26, 116, 943, 1027
TaqII	GACCGA	1 cut(s)	919
TasI	AATT	3 cut(s)	354, 372, 703
TauI	GCSGC	1 cut(s)	834
TfiI	GAWTC	2 cut(s)	283, 605
Tru1I	TTAA	6 cut(s)	36, 353, 357, 447, 618, 1044
Tru9I	TTAA	6 cut(s)	36, 353, 357, 447, 618, 1044
TscAI	CASTG	1 cut(s)	485
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	4 cut(s)	135, 494, 647, 836
Tsp45I	GTSAC	1 cut(s)	267
TspDTI	ATGAA	1 cut(s)	293
TspGWI	ACGGA	1 cut(s)	704
TspRI	CASTG	1 cut(s)	485
VpaK11BI	GGWCC	3 cut(s)	145, 213, 931
VspI	ATTAAT	2 cut(s)	357, 447
XagI	CCTNNNNNAGG	1 cut(s)	221
XapI	RAATTY	1 cut(s)	372
XceI	RCATGY	1 cut(s)	550
XcmI	CCANNNNNNNNNTGG	1 cut(s)	991
XmiI	GTMKAC	1 cut(s)	630
XspI	CTAG	4 cut(s)	107, 582, 1007, 1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.